genome.fa.s7748.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007748.1 Hibiscus syriacus cultivar Beakdansim tig00110013_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4568288

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   

This is table  4  of  24  ( 2778 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
520448--520791	173	2.0	175	98	1	665	24	27	14	33	1.94
522089--522560	238	2.0	235	98	1	917	31	8	17	41	1.80
522715--522760	22	2.0	23	83	8	58	60	8	0	30	1.26
524727--524761	2	17.5	2	93	0	61	48	0	2	48	1.16
526128--526160	17	2.1	16	88	11	50	39	0	3	57	1.14
526469--526496	2	14.0	2	100	0	56	50	0	0	50	1.00
527045--527069	3	8.3	3	100	0	50	0	0	32	68	0.90
530436--530517	22	3.8	22	66	15	53	23	8	18	50	1.74
535456--535541	32	2.9	30	82	10	104	26	22	20	30	1.98
535527--535578	24	2.3	23	83	9	63	26	13	30	28	1.94
537176--537217	22	1.9	22	90	0	66	30	28	21	19	1.97
538078--538102	2	12.5	2	100	0	50	52	0	0	48	1.00
541858--541915	23	2.5	23	78	10	73	31	25	25	17	1.97
542139--542189	22	2.2	24	83	10	63	45	23	1	29	1.64
542742--542795	27	2.0	26	82	7	63	40	11	3	44	1.58
547362--547685	160	2.0	162	94	5	577	21	12	13	51	1.74
553356--553431	38	2.0	38	87	7	111	50	0	2	47	1.15
563336--563374	19	2.1	19	90	4	62	76	0	0	23	0.78
571413--571479	21	3.2	21	85	4	91	31	20	19	28	1.97
571428--571494	20	3.3	20	87	8	100	35	20	19	23	1.95
571413--571494	41	2.0	41	88	4	121	32	20	18	28	1.96
571464--571504	20	2.0	20	85	0	55	34	19	21	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
572358--572411	24	2.2	24	93	0	90	20	18	20	40	1.91
574846--574934	20	4.4	20	85	2	126	35	24	21	17	1.95
574846--574934	40	2.2	40	90	4	144	35	24	21	17	1.95
574906--575001	33	2.8	33	90	3	138	41	20	23	13	1.88
574939--575007	19	3.8	19	73	21	76	44	18	21	14	1.85
575011--575135	19	6.8	19	82	9	170	14	20	16	48	1.81
575270--575306	14	2.6	14	86	0	56	48	21	0	29	1.50
576308--576336	9	3.2	9	100	0	58	65	0	13	20	1.26
576679--576777	42	2.4	42	75	3	101	23	19	34	23	1.97
577269--577327	20	3.0	20	92	0	91	38	20	18	22	1.93
577353--577474	34	3.4	34	81	12	145	17	20	19	42	1.89
577374--577497	20	6.5	20	80	10	143	20	18	19	41	1.90
577336--577497	74	2.2	73	87	1	225	19	19	19	41	1.90
579376--579425	20	2.5	20	83	0	64	52	20	14	14	1.75
579471--579517	20	2.3	20	92	0	76	23	19	21	36	1.95
580127--580200	21	3.5	21	94	0	121	33	16	27	22	1.95
581295--581352	29	2.0	30	86	3	82	58	10	10	20	1.60
594638--594662	12	2.1	12	100	0	50	52	8	8	32	1.60
609375--609428	11	5.0	11	72	18	51	55	1	3	38	1.28
617405--617518	59	1.9	59	89	3	176	35	23	16	23	1.95
620677--620713	20	1.9	19	89	10	58	45	10	24	18	1.81
622129--622245	59	2.0	59	91	3	191	35	24	14	24	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
624660--624693	6	5.7	6	96	0	59	29	52	17	0	1.45
625205--625296	6	15.5	6	98	1	177	0	16	51	32	1.45
627118--627218	14	7.0	14	76	14	89	17	17	10	53	1.72
627121--627218	28	3.4	28	82	8	115	18	18	10	53	1.72
627130--627219	45	2.0	45	95	0	162	18	18	10	52	1.73
627966--628042	34	2.3	34	95	0	136	24	29	18	27	1.98
631928--632027	14	6.9	14	78	6	101	17	17	11	55	1.69
631968--632001	17	2.0	17	94	0	59	17	20	11	50	1.77
631940--632027	45	2.0	45	93	0	149	17	17	11	54	1.70
633276--633433	81	2.0	81	94	0	280	27	11	25	35	1.90
633963--634000	12	3.2	12	85	10	51	52	0	0	47	1.00
636640--636703	3	21.0	3	84	9	85	37	0	0	62	0.95
637955--638042	12	7.2	12	75	14	72	30	3	1	64	1.17
637977--638042	3	22.3	3	76	14	66	30	1	0	68	0.99
637977--638044	17	3.9	18	78	21	74	30	1	0	67	0.99
637977--638044	36	1.9	34	91	5	109	30	1	0	67	0.99
638043--638093	2	26.5	2	76	7	52	50	0	0	49	1.00
638096--638321	116	2.0	116	82	11	279	33	11	8	46	1.71
638229--638271	20	2.2	20	86	0	59	32	0	2	65	1.06
638129--638359	116	2.0	116	80	8	265	35	9	8	46	1.67
638858--638884	2	13.5	2	100	0	54	48	0	0	51	1.00
643435--643503	6	11.5	6	78	9	70	78	1	18	1	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
643446--643489	11	3.9	11	83	13	54	81	2	15	0	0.78
643431--643495	17	3.8	17	75	18	64	78	1	20	0	0.83
645697--645916	114	1.9	114	90	1	352	34	15	20	29	1.94
648390--648444	22	2.5	22	100	0	110	34	12	14	38	1.84
649119--649770	76	8.6	76	96	0	1173	24	19	21	34	1.96
649704--649805	45	2.3	45	96	0	186	22	19	20	37	1.95
649940--649984	3	15.0	3	90	0	72	37	0	0	62	0.96
651241--651283	12	3.7	11	87	9	59	30	2	2	65	1.18
651263--651330	3	24.3	3	74	16	58	26	2	0	70	1.01
651252--651331	38	2.2	36	82	10	101	27	2	1	68	1.10
651263--651330	15	4.1	16	75	20	68	26	2	0	70	1.01
651263--651330	26	2.6	26	83	4	84	26	2	0	70	1.01
651378--651603	116	2.0	117	81	8	277	35	10	7	46	1.67
651510--651552	20	2.2	20	86	0	59	32	0	2	65	1.06
651608--651664	29	2.0	29	86	6	80	47	1	0	50	1.11
657074--657110	17	2.1	18	90	5	58	51	0	2	45	1.15
661602--661628	3	9.0	3	100	0	54	33	0	0	66	0.92
670799--670871	36	2.0	36	94	0	128	36	17	17	27	1.93
671676--671719	17	2.6	17	92	0	79	25	20	6	47	1.74
677091--677121	2	15.5	2	100	0	62	51	0	0	48	1.00
677343--677403	13	4.8	13	76	15	65	59	18	9	13	1.61
677334--677378	23	2.0	23	86	0	63	60	15	6	17	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
677393--677427	10	3.5	10	88	0	52	65	14	8	11	1.46
681001--681061	23	2.7	23	86	0	77	27	24	26	21	1.99
689470--689630	80	2.0	80	98	0	313	27	12	31	28	1.93
690468--690566	49	2.0	50	90	2	155	23	19	29	28	1.98
693822--693856	18	2.0	18	88	5	54	57	5	0	37	1.23
696043--696143	37	2.7	37	82	0	112	41	11	12	33	1.80
696558--696605	23	2.0	24	84	11	64	27	2	0	70	0.98
696662--696711	21	2.3	21	79	3	55	22	6	2	70	1.20
696575--696775	103	1.9	105	79	11	227	25	6	2	65	1.30
696958--697025	23	3.1	22	74	18	61	17	4	2	75	1.10
699166--699208	19	2.3	19	100	0	86	25	25	18	30	1.98
701619--701701	23	3.7	23	76	13	91	73	9	13	3	1.21
701612--701701	46	2.0	46	91	4	146	72	10	13	4	1.26
701623--701701	22	3.5	22	75	13	79	73	8	13	3	1.21
703292--704383	106	10.3	106	92	1	1769	34	25	17	21	1.96
704308--704461	78	2.0	78	97	0	290	35	24	20	20	1.96
704202--704567	184	2.0	184	92	1	617	35	24	18	22	1.96
704386--704622	106	2.2	106	90	1	368	34	24	17	23	1.96
704096--704622	290	1.8	290	92	1	896	34	24	17	22	1.96
705888--705928	20	2.0	20	86	9	57	24	2	0	73	0.96
706043--706128	29	3.0	30	75	21	87	26	3	4	65	1.29
706186--706226	20	2.0	20	90	4	64	39	0	0	60	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
706268--706304	17	2.1	18	90	5	58	10	0	0	89	0.49
706247--706326	12	6.8	12	76	11	69	13	1	5	80	0.95
706247--706312	20	3.1	20	80	10	78	12	0	6	81	0.85
706270--706326	26	2.3	23	85	11	69	14	1	1	82	0.83
706268--706332	29	2.3	29	78	2	69	15	1	1	81	0.84
706247--706332	24	3.9	21	82	14	93	15	1	4	79	0.96
723106--723136	2	15.5	2	100	0	62	51	0	0	48	1.00
738472--738496	10	2.5	10	100	0	50	32	0	16	52	1.44
738920--738959	21	1.9	21	84	0	53	22	20	25	32	1.98
745508--745542	16	2.2	16	89	0	52	60	0	2	37	1.12

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24