Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007748.1 Hibiscus syriacus cultivar Beakdansim tig00110013_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4568288

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   

This is table  24  of  24  ( 2778 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4521130--4521156
3
9.0
3
100
0
54
66
0
0
33
0.92
4526115--4526167
21
2.4
22
78
18
56
52
1
9
35
1.45
4532412--4532449
18
2.1
18
95
0
67
50
5
13
31
1.63
4533303--4533356
16
3.2
17
78
7
65
55
0
0
44
0.99
4533358--4533396
9
4.2
9
80
6
51
61
7
0
30
1.24
4533358--4533410
19
2.7
19
73
5
52
66
5
0
28
1.15
4536829--4536855
14
1.9
14
100
0
54
44
14
3
37
1.63
4536852--4536924
24
3.0
24
87
0
110
52
16
8
23
1.70
4536865--4536903
12
3.2
12
81
0
51
51
17
12
17
1.76
4537080--4537112
16
2.0
17
88
5
50
42
12
9
36
1.74
4538537--4538596
23
2.6
23
97
0
111
23
31
26
18
1.97
4539208--4539357
66
2.3
66
88
6
223
14
26
28
31
1.95
4545399--4545466
23
3.0
22
86
4
91
27
29
23
19
1.98
4546080--4546226
64
2.2
64
86
7
206
14
26
27
31
1.95
4550120--4550165
14
3.3
13
85
11
56
36
0
4
58
1.18
4550138--4550224
16
5.6
16
80
9
99
41
2
2
54
1.26
4550117--4550224
15
7.1
15
77
15
96
39
1
2
55
1.25
4550149--4550233
32
2.7
31
85
7
100
41
2
4
51
1.35

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24

The End!