genome.fa.s7748.2.7.7.80.10.50.1000.22.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007748.1 Hibiscus syriacus cultivar Beakdansim tig00110013_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4568288

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   

This is table  22  of  24  ( 2778 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4197614--4197707	22	4.4	22	78	8	113	38	23	19	19	1.93
4197636--4197725	41	2.2	42	86	9	123	41	22	18	17	1.91
4203991--4204081	45	2.0	45	85	4	121	38	10	35	15	1.83
4203998--4204092	45	2.1	45	82	3	111	37	12	32	16	1.87
4208899--4209007	36	3.0	36	95	2	193	40	30	22	7	1.81
4209026--4209062	18	2.1	18	89	0	56	64	27	5	2	1.28
4209148--4209193	24	1.9	24	81	0	56	56	17	13	13	1.67
4209214--4209336	39	3.2	39	96	0	219	22	30	20	26	1.98
4216818--4216873	20	2.8	20	86	5	69	32	17	23	26	1.97
4216981--4217028	20	2.4	20	86	6	62	31	14	22	31	1.94
4217219--4217261	18	2.4	16	79	20	50	27	0	9	62	1.25
4218415--4218500	44	2.0	43	86	9	120	31	6	37	24	1.82
4218659--4218716	18	3.2	18	95	0	98	36	0	51	12	1.39
4218659--4218724	18	3.7	18	93	0	96	37	0	51	10	1.37
4218735--4218783	21	2.6	18	76	17	53	51	12	30	6	1.64
4235321--4235376	24	2.4	23	90	3	85	62	17	8	10	1.52
4235321--4235391	24	3.0	23	85	2	70	60	16	8	14	1.57
4235574--4235629	24	2.3	24	93	0	94	62	16	7	14	1.52
4235577--4235629	14	4.1	14	74	18	51	62	15	7	15	1.53
4239766--4239805	21	1.9	21	85	10	55	35	10	2	52	1.48
4243481--4243552	20	3.6	20	76	0	90	36	19	22	22	1.95
4243477--4243572	40	2.4	40	89	0	147	34	20	20	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4243478--4243594	20	5.8	20	73	7	85	31	21	20	26	1.98
4243770--4243812	22	2.0	22	85	0	59	27	39	13	18	1.89
4244195--4244288	20	4.8	20	85	1	100	13	15	24	45	1.83
4244254--4244297	20	2.2	20	87	0	61	11	11	20	56	1.64
4246205--4246271	20	3.3	20	89	0	98	32	25	17	23	1.97
4246315--4246370	20	2.8	20	100	0	112	16	19	25	39	1.91
4246872--4246979	21	5.1	21	68	9	69	22	35	18	24	1.96
4246869--4246976	42	2.6	43	74	14	109	21	35	19	24	1.96
4248811--4248859	19	2.7	17	84	9	53	26	18	30	24	1.98
4248811--4248990	64	2.8	61	79	12	195	28	16	26	29	1.97
4248937--4248973	19	1.9	19	100	0	74	29	16	32	21	1.95
4249001--4249040	21	1.9	21	94	0	71	22	15	30	32	1.94
4249001--4249047	21	2.2	21	88	0	67	21	14	27	36	1.93
4251540--4251619	24	3.5	23	77	14	94	27	23	26	22	2.00
4251517--4251639	44	2.8	42	75	12	122	24	21	28	26	1.99
4255446--4255488	20	2.2	20	83	8	52	37	4	2	55	1.33
4257280--4257328	19	2.7	17	84	9	53	26	18	30	24	1.98
4257280--4257459	64	2.8	61	79	14	195	28	15	26	29	1.96
4257406--4257442	19	1.9	19	94	0	65	27	16	35	21	1.94
4257470--4257509	21	1.9	21	94	0	71	22	15	30	32	1.94
4257470--4257516	21	2.2	21	88	0	67	21	14	27	36	1.93
4266633--4266667	18	1.9	18	94	0	61	11	20	48	20	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4266644--4266674	13	2.4	13	100	0	62	12	22	48	16	1.80
4267603--4267668	30	2.2	30	91	5	107	31	4	10	53	1.56
4267817--4267883	19	3.5	20	81	6	66	23	20	22	32	1.98
4267779--4268186	74	5.5	73	83	8	471	22	20	21	35	1.96
4267925--4268191	20	13.9	20	79	9	288	21	19	22	35	1.96
4267945--4268194	94	2.7	93	82	5	308	22	19	22	35	1.96
4268010--4268127	34	3.3	34	76	13	137	20	21	22	35	1.96
4268064--4268166	54	1.9	54	89	0	161	21	20	22	35	1.96
4270029--4270082	24	2.2	24	93	0	90	40	20	18	20	1.91
4270899--4270966	20	3.4	20	87	0	82	29	19	25	26	1.98
4270921--4271030	40	2.8	40	84	2	114	26	20	20	32	1.97
4270921--4271030	20	5.5	20	76	7	98	26	20	20	32	1.97
4278307--4278385	33	2.4	32	87	6	113	11	30	29	29	1.92
4280709--4280737	5	5.8	5	100	0	58	62	0	37	0	0.96
4284745--4284906	49	3.3	49	96	3	294	42	0	12	45	1.42
4284848--4284927	21	4.0	21	60	15	51	43	0	11	45	1.39
4285272--4285414	14	9.6	14	70	20	69	41	2	10	45	1.50
4285263--4285487	11	18.6	11	66	23	64	41	2	9	45	1.51
4285263--4285438	60	3.0	58	78	9	209	40	1	10	46	1.49
4285332--4285395	26	2.6	26	83	11	64	46	4	7	40	1.53
4285342--4285408	34	1.9	35	87	3	100	49	2	8	38	1.50
4285406--4285450	21	2.1	22	84	12	58	37	2	6	53	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4286050--4286083	14	2.4	14	95	5	59	47	5	8	38	1.59
4292207--4292260	22	2.5	21	76	8	56	27	29	27	14	1.95
4298254--4298355	22	4.6	22	81	9	111	23	30	21	24	1.99
4298254--4298355	44	2.3	43	86	6	143	23	30	21	24	1.99
4302606--4302664	18	3.3	18	95	0	100	45	22	32	0	1.52
4303151--4303197	2	24.0	2	91	4	78	48	2	0	48	1.13
4304386--4304412	14	1.9	14	100	0	54	44	3	7	44	1.49
4304526--4304583	14	4.3	14	77	16	68	46	1	8	43	1.44
4304525--4304613	26	3.5	26	77	11	87	44	2	8	43	1.48
4304599--4304683	14	6.2	13	73	17	50	38	0	5	55	1.24
4304595--4304640	22	2.1	22	88	8	67	39	0	4	56	1.19
4304594--4304720	56	2.2	59	90	5	199	40	0	8	51	1.33
4304599--4304763	69	2.4	69	78	11	169	41	0	9	48	1.40
4304696--4304730	10	3.4	10	96	4	61	42	0	17	40	1.49
4305013--4305142	14	10.1	13	75	14	101	42	2	10	44	1.52
4305004--4305161	49	3.2	49	82	10	178	41	1	10	46	1.48
4305013--4305131	26	4.7	26	78	10	129	42	2	10	44	1.51
4305004--4305232	14	18.5	12	70	17	96	41	2	10	45	1.51
4305139--4305180	17	2.5	17	84	0	57	40	0	2	57	1.12
4306401--4306434	14	2.4	14	95	0	59	52	0	0	47	1.00
4307767--4307795	4	7.2	4	100	0	58	51	24	0	24	1.48
4308154--4308257	29	3.7	27	75	7	91	24	27	32	15	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4309515--4309976	231	2.0	232	99	0	917	29	23	15	31	1.95
4342664--4342796	7	18.4	7	69	20	53	74	0	18	6	1.07
4342664--4342698	17	2.2	16	90	10	54	80	0	17	2	0.84
4342664--4342808	23	6.3	22	70	23	86	73	0	20	6	1.09
4342664--4342723	21	2.8	21	85	10	68	75	1	20	3	1.04
4342673--4342773	17	5.9	17	70	20	61	73	0	19	5	1.10
4342750--4342796	15	3.1	15	87	6	60	74	0	17	8	1.05
4342762--4342798	7	5.1	7	87	6	56	72	0	16	10	1.10
4343840--4344094	51	4.9	51	88	2	330	30	15	27	26	1.96
4343850--4344146	51	5.6	55	85	8	216	30	15	26	27	1.96
4344009--4344177	55	3.1	54	81	7	153	30	15	21	33	1.94
4346989--4347145	62	2.5	63	79	11	178	32	22	17	27	1.96
4347117--4347164	18	2.6	19	84	12	57	25	29	18	27	1.98
4347441--4347551	53	2.1	52	93	4	197	21	14	14	49	1.79
4355698--4355857	65	2.5	63	86	9	207	31	21	18	28	1.97
4355829--4355877	19	2.6	19	84	9	57	24	30	18	26	1.98
4357836--4357894	31	1.9	31	96	0	109	42	8	6	42	1.61
4358551--4358580	12	2.4	13	88	11	53	6	36	0	56	1.26
4365744--4365791	23	2.1	23	88	0	69	35	12	18	33	1.89
4366222--4366280	23	2.6	23	88	0	82	40	16	5	37	1.71
4366296--4366345	21	2.4	22	80	6	59	36	10	12	42	1.76
4366648--4366706	23	2.6	23	88	0	82	40	16	5	37	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4366724--4366768	22	2.1	22	84	12	58	40	13	6	40	1.71
4367062--4367134	23	3.2	23	82	0	83	41	20	5	32	1.75
4367485--4367561	23	3.5	20	74	19	64	40	20	3	35	1.71
4367500--4367562	23	2.7	23	95	0	108	38	19	4	38	1.73
4365858--4368182	428	5.4	430	96	1	4319	38	12	7	41	1.71
4367930--4367992	23	2.7	23	92	0	99	38	20	4	36	1.74
4368412--4368498	39	2.2	39	95	0	156	17	13	20	48	1.81
4368769--4368805	18	2.1	18	89	0	56	51	10	5	32	1.60
4369401--4370374	198	4.9	198	97	0	1799	31	17	14	36	1.90
4370493--4370540	19	2.6	19	93	3	80	56	10	2	31	1.45

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24