genome.fa.s7823.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007823.1 Hibiscus syriacus cultivar Beakdansim tig00110160_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  6287495

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   

This is table  10  of  33  ( 3920 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1727448--1727490	23	1.9	22	85	4	59	53	2	2	41	1.26
1727493--1727727	115	2.0	115	82	3	285	45	7	8	38	1.62
1727894--1727953	16	3.9	16	80	10	56	65	1	8	25	1.30
1727919--1727953	16	2.1	17	94	5	63	62	0	5	31	1.18
1731319--1731415	31	3.1	31	89	2	124	32	14	14	38	1.86
1731348--1731427	31	2.6	31	88	4	90	31	13	16	38	1.87
1736504--1736542	20	2.0	20	90	5	62	23	5	2	69	1.21
1740292--1740325	2	17.5	2	87	6	52	47	0	52	0	1.00
1740644--1740782	58	2.4	58	83	2	161	46	5	16	32	1.69
1740694--1740783	29	3.1	29	66	12	85	48	3	12	35	1.57
1740891--1740924	14	2.4	14	90	0	50	61	8	11	17	1.54
1740899--1740926	14	2.0	14	100	0	56	64	7	7	21	1.43
1745994--1746047	17	3.4	17	76	23	71	9	38	7	44	1.65
1745994--1746055	31	2.0	31	100	0	124	9	35	6	48	1.62
1746736--1746964	114	2.0	115	97	1	433	42	18	15	23	1.88
1750326--1750350	10	2.5	10	100	0	50	48	28	0	24	1.52
1757313--1757365	24	2.2	24	96	0	97	37	20	20	20	1.94
1758346--1758824	239	2.0	239	99	0	942	28	19	23	28	1.98
1758829--1758853	11	2.3	11	100	0	50	8	0	16	76	1.02
1761878--1761939	21	2.9	22	87	2	72	27	20	27	24	1.99
1761888--1761939	21	2.4	22	90	3	79	26	21	28	23	1.99
1762477--1762597	64	1.9	65	81	8	149	19	23	23	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1766385--1766438	24	2.2	24	90	0	81	38	22	11	27	1.88
1768780--1768839	21	2.8	22	89	2	86	26	25	25	23	2.00
1770197--1770414	109	2.0	109	99	0	427	30	10	14	44	1.78
1770812--1770855	23	1.9	23	95	0	79	38	11	22	27	1.88
1771140--1771182	14	3.2	14	80	6	54	60	2	0	37	1.10
1774618--1774703	45	1.9	45	90	0	136	30	20	13	34	1.92
1783227--1783721	54	9.2	54	84	0	560	35	17	14	32	1.90
1783227--1783721	162	3.1	161	85	1	621	35	17	14	32	1.90
1784154--1784206	20	2.7	20	96	0	97	16	26	16	39	1.91
1790293--1790749	54	8.4	54	88	3	627	35	18	15	30	1.92
1791045--1791094	20	2.5	20	100	0	100	22	28	16	34	1.95
1794050--1794127	31	2.5	31	95	0	138	16	17	23	42	1.89
1794856--1794929	21	3.5	21	92	0	112	29	24	21	24	1.99
1796112--1796158	22	2.2	21	84	3	58	40	23	14	21	1.90
1798760--1798790	6	5.2	6	100	0	62	48	0	0	51	1.00
1799380--1799479	3	32.7	3	79	7	103	40	1	0	59	1.04
1801579--1801636	16	3.6	16	84	13	66	25	1	0	72	0.94
1801577--1801634	23	2.5	24	78	10	68	25	1	0	72	0.94
1801589--1801637	13	3.8	13	76	10	55	26	0	0	73	0.83
1803000--1803085	43	2.0	43	90	0	136	30	10	24	34	1.89
1803342--1803380	15	2.7	15	88	4	53	20	15	12	51	1.76
1806592--1806624	17	1.9	17	100	0	66	78	0	21	0	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1806601--1806647	10	4.7	10	79	7	51	76	0	21	2	0.89
1806602--1806667	20	3.2	20	79	12	71	80	1	16	1	0.87
1806592--1806666	20	3.9	18	79	16	55	78	1	18	1	0.89
1806614--1806664	10	4.9	10	75	17	50	80	1	15	1	0.89
1811070--1811214	50	2.8	53	74	11	140	40	13	19	26	1.89
1811586--1811640	22	2.5	22	87	0	83	34	12	12	40	1.82
1812040--1813599	113	13.8	113	94	1	2426	38	15	17	28	1.91
1813545--1813623	36	2.2	36	95	0	140	49	10	20	20	1.77
1813669--1813729	30	2.0	30	100	0	122	42	21	16	19	1.89
1813917--1814016	3	32.7	3	81	7	112	39	1	0	60	1.04
1815421--1815607	100	1.9	99	80	5	216	37	10	10	41	1.73
1820683--1820730	2	24.0	2	100	0	96	50	0	0	50	1.00
1820950--1821215	43	6.2	43	81	6	236	33	22	21	21	1.97
1820950--1821215	85	3.1	85	83	6	340	33	22	21	21	1.97
1820978--1821215	128	1.9	128	84	5	320	32	23	22	21	1.98
1822429--1822467	20	2.0	20	100	0	78	25	25	38	10	1.87
1824646--1825000	83	4.3	82	88	4	443	31	18	21	28	1.97
1824646--1825000	41	8.6	41	82	2	392	31	18	21	28	1.97
1824646--1824966	124	2.6	124	85	3	414	32	18	22	27	1.97
1831785--1831823	3	13.0	3	94	0	69	33	0	30	35	1.58
1832024--1832057	18	1.9	18	94	5	61	11	5	5	76	1.14
1850172--1850298	60	2.1	61	86	5	179	33	17	14	33	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1850193--1850318	60	2.1	60	86	0	171	33	15	14	36	1.88
1851177--1851222	22	2.1	22	88	4	67	32	15	6	45	1.71
1853638--1853686	18	2.8	18	93	3	82	51	4	38	6	1.46
1860446--1860493	20	2.4	20	78	0	60	29	31	20	18	1.97
1864207--1864287	37	2.2	37	89	6	121	50	4	8	35	1.55
1865758--1865838	36	2.2	37	91	2	128	48	4	8	38	1.56
1871229--1871332	33	3.0	36	81	6	117	44	18	4	32	1.71
1883287--1883352	21	3.5	21	65	26	56	48	15	3	33	1.60
1883243--1883353	35	3.1	35	87	6	143	45	15	2	36	1.60
1887685--1887890	49	4.2	49	92	0	322	27	21	15	36	1.93
1891207--1891235	14	2.1	14	93	6	51	10	6	0	82	0.83
1905630--1905807	90	2.0	90	92	0	293	44	6	11	37	1.65
1918432--1918525	36	2.6	36	98	0	179	19	18	21	41	1.90
1923089--1923126	17	2.3	17	86	4	51	52	0	2	44	1.14
1926225--1926281	24	2.4	25	88	8	91	21	36	31	10	1.87
1926282--1926337	29	1.9	29	96	0	103	21	28	32	17	1.96
1926717--1926749	14	2.4	14	90	5	50	21	0	33	45	1.52
1926871--1926976	30	3.5	30	80	7	115	37	0	13	48	1.49
1927030--1927063	15	2.2	16	94	5	61	38	0	5	55	1.24
1928457--1928499	21	2.0	21	100	0	86	27	25	18	27	1.98
1929433--1929741	14	23.3	14	70	19	155	45	8	2	43	1.47
1929543--1929650	26	4.2	26	95	2	191	42	8	3	45	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1929642--1929808	8	18.9	9	68	23	54	51	10	0	37	1.37
1929699--1929763	12	5.2	12	77	17	60	47	7	0	44	1.31
1929616--1929801	88	2.1	86	85	11	247	50	10	0	38	1.40
1929699--1929763	25	2.6	25	81	15	73	47	7	0	44	1.31
1929590--1929808	113	1.9	113	88	4	334	49	10	0	39	1.44
1929741--1929807	35	2.0	33	88	5	98	53	11	0	34	1.38
1929661--1929798	27	5.3	27	78	10	121	52	9	0	37	1.34
1929919--1929998	21	4.0	21	68	21	62	45	11	0	43	1.39
1929932--1930155	49	4.6	49	86	5	294	45	10	0	43	1.41
1930026--1930058	13	2.4	14	90	5	50	39	18	0	42	1.50
1930919--1931012	27	3.5	26	72	21	77	41	3	8	46	1.50
1931371--1931397	14	1.9	14	100	0	54	74	14	3	7	1.18
1931368--1931400	17	1.9	17	88	11	50	72	15	3	9	1.21
1931798--1931846	21	2.3	21	85	3	71	53	16	0	30	1.43
1932408--1932548	29	4.8	29	91	1	201	13	33	30	22	1.93
1939210--1939252	12	3.8	12	81	12	54	27	6	20	44	1.77
1941364--1941417	18	3.1	18	84	10	67	44	5	1	48	1.37
1941438--1941485	13	3.5	13	88	5	69	50	8	4	37	1.52
1941406--1941484	28	2.9	26	79	7	77	45	6	7	40	1.58
1941672--1941710	17	2.2	18	90	4	62	51	7	2	38	1.44
1941785--1941850	7	9.4	7	81	0	60	50	30	0	19	1.48
1941952--1942025	2	35.5	2	72	12	51	47	5	5	41	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1941909--1942054	61	2.3	67	81	10	162	44	7	6	41	1.59
1941964--1942054	24	4.0	24	83	7	109	43	6	5	43	1.53
1942064--1942238	64	2.7	64	95	0	305	40	7	6	45	1.59
1942281--1942341	14	4.3	14	76	12	61	42	6	4	45	1.51
1942235--1942479	65	3.9	64	73	16	185	44	4	3	46	1.42
1942288--1942349	14	4.4	14	74	11	54	45	8	3	43	1.49
1942418--1942509	6	15.3	6	73	22	54	47	0	2	50	1.13
1942171--1942471	153	2.0	153	80	10	339	42	5	4	46	1.48
1942420--1942500	28	2.8	27	87	9	90	48	0	1	50	1.08
1942387--1942499	21	5.2	21	72	23	83	47	2	0	48	1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33