genome.fa.s7823.2.7.7.80.10.50.1000.33.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007823.1 Hibiscus syriacus cultivar Beakdansim tig00110160_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  6287495

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   

This is table  33  of  33  ( 3920 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6092728--6092795	35	1.9	35	90	0	109	39	19	7	33	1.79
6093538--6093578	20	1.9	20	85	14	55	51	21	4	21	1.67
6095788--6095879	27	3.4	27	80	4	96	30	4	31	33	1.77
6111679--6111929	124	2.0	126	96	1	461	24	23	18	33	1.96
6119072--6119145	30	2.5	30	81	0	76	31	16	10	41	1.82
6119904--6119990	37	2.4	36	81	7	104	42	19	3	34	1.68
6120976--6121091	35	3.2	36	80	6	137	35	3	16	44	1.64
6124861--6124982	35	3.4	36	80	14	144	32	1	18	47	1.58
6130102--6130138	19	1.9	19	94	0	65	21	2	18	56	1.54
6132010--6132044	12	2.9	12	100	0	70	51	8	8	31	1.63
6138423--6138887	235	2.0	227	93	6	801	33	16	10	39	1.83
6141019--6141076	29	2.0	29	86	0	80	15	36	25	22	1.94
6141268--6141292	12	2.1	12	100	0	50	16	36	8	40	1.77
6141676--6141738	28	2.3	27	81	13	74	26	1	3	68	1.14
6147613--6147719	31	3.5	31	77	8	119	33	16	17	31	1.93
6148853--6148949	48	2.0	50	95	4	180	18	26	23	30	1.98
6150803--6150840	20	2.0	20	89	5	60	55	2	10	31	1.48
6151084--6151124	19	2.2	19	86	0	55	34	0	2	63	1.08
6159328--6159444	17	6.9	17	77	5	130	40	11	9	39	1.73
6159328--6159444	34	3.5	33	85	3	153	40	11	9	39	1.73
6165464--6165541	32	2.5	32	89	4	124	34	20	21	23	1.97
6165659--6165687	8	3.8	8	95	4	51	27	27	10	34	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6166481--6166554	18	3.6	20	72	22	64	22	24	27	25	2.00
6170026--6170061	18	1.9	19	88	5	56	66	0	27	5	1.13
6181776--6181800	3	8.3	3	100	0	50	0	32	0	68	0.90
6189123--6189179	30	2.0	28	86	13	80	70	8	3	17	1.28
6189477--6189517	21	1.9	22	85	5	57	24	17	19	39	1.92
6193646--6193722	31	2.5	31	82	2	100	28	31	25	14	1.95
6194592--6194622	7	4.4	7	100	0	62	25	29	29	16	1.96
6194612--6194671	17	3.4	17	80	8	75	13	23	45	18	1.84
6194619--6194668	19	2.5	19	90	9	73	8	22	50	20	1.74
6194642--6194669	14	2.0	14	100	0	56	7	21	50	21	1.72
6194665--6194735	19	3.7	19	88	1	97	28	29	23	18	1.98
6194665--6194734	9	7.3	9	73	12	59	28	30	24	17	1.97
6194672--6194705	10	3.5	10	84	8	52	20	32	29	17	1.96
6194760--6194784	9	2.8	9	100	0	50	0	36	48	16	1.46
6200987--6201063	31	2.5	31	82	2	100	28	31	25	14	1.95
6200940--6201063	63	2.0	63	82	6	153	26	29	27	16	1.97
6201933--6201963	7	4.4	7	100	0	62	25	29	29	16	1.96
6201953--6202029	17	4.4	17	82	6	100	14	22	44	19	1.86
6202000--6202027	14	2.0	14	100	0	56	7	21	50	21	1.72
6202023--6202075	19	2.8	19	97	0	97	24	32	26	16	1.97
6202023--6202092	9	7.3	9	75	12	59	27	28	25	18	1.98
6202025--6202077	10	5.5	10	80	8	65	28	32	22	16	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6208701--6208746	21	2.2	21	88	7	67	65	4	4	26	1.30
6212983--6213007	2	12.5	2	100	0	50	52	0	48	0	1.00
6215145--6215188	19	2.3	20	80	11	56	22	11	0	65	1.24
6215865--6215951	31	2.8	31	81	6	88	40	1	3	55	1.24
6216686--6216735	19	2.4	21	77	12	59	48	2	4	46	1.32
6216667--6216753	31	2.8	30	79	10	86	52	3	2	41	1.31
6217441--6217499	29	2.0	29	87	6	84	23	30	23	22	1.99
6217516--6217597	13	6.2	13	80	8	58	18	18	18	45	1.86
6217550--6217587	19	2.0	19	100	0	76	21	21	15	42	1.89
6218172--6218366	30	6.5	30	83	8	218	21	21	20	37	1.94
6220723--6220774	20	2.6	20	100	0	104	30	19	23	26	1.98
6224543--6224577	2	17.5	2	100	0	70	51	0	0	48	1.00
6226687--6226721	18	1.9	18	88	0	52	20	25	22	31	1.98
6227684--6227782	50	2.0	50	95	0	180	18	31	11	39	1.85
6229121--6229166	12	3.8	12	82	0	56	67	0	10	21	1.21
6231553--6231588	12	3.0	12	95	0	63	77	0	22	0	0.76
6231554--6231589	18	2.0	18	94	0	63	75	0	25	0	0.81
6231553--6231588	6	6.0	6	90	0	54	77	0	22	0	0.76
6235747--6235781	18	1.9	18	88	0	52	62	8	2	25	1.38
6249113--6249149	14	2.6	14	86	0	56	43	18	18	18	1.89
6257590--6257655	24	2.8	24	82	11	82	22	22	25	28	1.99
6258180--6258208	13	2.1	14	93	6	51	51	0	13	34	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6275054--6275095	14	2.9	14	82	13	50	59	7	9	23	1.53
6276005--6276111	29	3.6	30	82	13	116	16	27	26	29	1.97
6276007--6276156	19	7.7	19	76	16	114	14	26	30	29	1.95
6276006--6276162	29	5.4	29	77	10	92	15	26	28	28	1.96
6276006--6276118	39	2.9	39	93	6	187	15	27	27	29	1.96
6276006--6276158	39	4.0	38	88	7	170	15	26	29	29	1.96
6276160--6276211	5	9.6	5	76	15	50	19	51	21	7	1.71
6276181--6276218	17	2.2	17	100	0	76	18	47	23	10	1.79
6276160--6276225	22	2.9	22	93	4	105	18	46	22	12	1.81
6276208--6276238	7	4.4	7	91	0	53	19	29	25	25	1.99
6283391--6283442	19	2.7	19	80	14	70	17	30	26	25	1.97
6283387--6283442	29	1.9	29	89	7	87	16	30	25	28	1.96
6283446--6283484	17	2.3	17	95	0	69	17	43	23	15	1.87
6283474--6283504	7	4.4	7	91	0	53	19	29	25	25	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33

The End!