genome.fa.s7823.2.7.7.80.10.50.1000.31.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007823.1 Hibiscus syriacus cultivar Beakdansim tig00110160_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  6287495

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   

This is table  31  of  33  ( 3920 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5753729--5753916	38	4.9	37	76	10	157	46	3	7	41	1.51
5753699--5753866	78	2.1	80	79	13	204	47	4	7	39	1.53
5753702--5753917	39	5.6	38	73	14	167	45	4	8	41	1.54
5753894--5754058	22	7.2	22	74	12	118	44	2	9	44	1.49
5753937--5753987	27	2.0	25	88	7	75	50	3	5	39	1.45
5753916--5754009	49	1.9	49	87	12	140	45	2	8	43	1.46
5754024--5754064	21	2.0	21	90	0	64	46	2	7	43	1.44
5754024--5754062	19	2.0	21	85	10	55	46	2	7	43	1.46
5754087--5754139	24	2.1	24	89	6	79	37	0	0	62	0.96
5754318--5754351	17	2.0	17	88	0	50	47	20	14	17	1.83
5758087--5758132	13	3.6	13	79	2	58	54	8	0	36	1.32
5759649--5759714	3	21.0	3	82	11	71	37	0	0	62	0.96
5759654--5759726	18	4.3	18	72	22	68	41	0	0	58	0.98
5759649--5759726	24	3.2	24	79	12	95	41	0	0	58	0.98
5759649--5759714	30	2.3	30	87	7	93	37	0	0	62	0.96
5761437--5761475	18	2.2	17	86	4	51	41	0	0	58	0.98
5761423--5761475	26	2.0	26	82	7	63	41	0	0	58	0.98
5771525--5771599	22	3.5	21	85	7	98	36	10	14	38	1.81
5772310--5772480	77	2.2	77	95	1	317	24	19	19	36	1.95
5772422--5772535	45	2.5	45	95	2	201	22	23	21	32	1.98
5772467--5772685	76	2.9	76	94	1	379	21	21	21	34	1.97
5772345--5772611	121	2.2	122	93	2	446	22	22	20	34	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5772619--5772732	45	2.5	45	92	2	183	21	21	21	34	1.97
5772543--5772808	121	2.2	121	93	1	460	21	21	22	34	1.96
5772310--5772884	197	2.9	197	95	0	1006	22	21	21	34	1.96
5772664--5772993	76	4.3	76	95	0	572	21	21	21	35	1.96
5773151--5773216	3	21.0	3	82	11	71	37	0	0	62	0.96
5773156--5773228	18	4.3	18	72	22	68	41	0	0	58	0.98
5773151--5773228	24	3.2	24	79	12	95	41	0	0	58	0.98
5773151--5773216	30	2.3	30	87	7	93	37	0	0	62	0.96
5774565--5774643	21	3.7	21	79	17	83	29	1	0	69	0.96
5774578--5774640	3	21.0	3	77	18	60	30	0	0	69	0.88
5774641--5774689	23	2.1	24	85	7	66	63	0	0	36	0.95
5774943--5774980	17	2.2	17	90	0	58	42	0	0	57	0.98
5775872--5775899	14	2.0	14	100	0	56	57	7	7	28	1.52
5776350--5776409	21	2.9	21	82	5	68	50	0	0	50	1.00
5806983--5807035	22	2.4	22	75	12	54	24	9	26	39	1.86
5807929--5807967	20	1.9	21	84	5	53	46	0	2	51	1.14
5807992--5808018	13	2.1	13	100	0	54	55	0	0	44	0.99
5807939--5808017	30	2.7	29	72	20	74	48	1	2	48	1.23
5807992--5808034	13	3.1	14	86	6	52	55	0	2	41	1.12
5808074--5808127	23	2.3	24	96	3	101	42	0	9	48	1.35
5809726--5809787	6	10.3	6	87	0	88	1	0	51	46	1.10
5810520--5810619	6	18.3	6	72	25	89	51	1	0	48	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5810490--5810596	53	2.2	48	82	12	128	50	0	0	48	1.07
5810516--5810650	21	6.2	21	78	17	134	49	0	1	48	1.15
5810516--5810780	65	4.0	65	73	18	187	47	1	3	46	1.31
5810518--5810648	15	8.0	16	71	21	94	48	0	1	48	1.16
5810634--5810696	31	2.0	31	90	0	99	53	3	1	41	1.26
5810712--5810746	16	2.3	15	90	5	52	48	2	2	45	1.32
5810768--5810827	24	2.5	24	81	5	68	46	1	5	46	1.34
5810820--5810908	36	2.5	36	88	0	133	47	7	2	42	1.45
5810959--5810999	21	2.0	21	90	0	64	43	4	7	43	1.53
5811037--5811185	20	7.4	19	71	19	108	42	7	6	44	1.57
5811040--5811131	22	4.1	23	73	16	86	43	4	6	45	1.49
5811023--5811166	63	2.3	65	80	6	161	42	6	6	45	1.54
5811125--5811202	37	2.2	36	86	4	104	41	10	6	42	1.64
5811316--5811356	21	2.0	21	85	0	55	24	0	26	48	1.51
5811411--5811604	80	2.4	80	86	8	263	40	7	3	48	1.48
5811507--5811557	17	3.1	17	77	5	52	49	3	0	47	1.20
5811658--5811736	11	7.3	11	78	13	74	45	1	2	50	1.23
5811629--5811706	29	2.7	29	71	15	70	44	1	6	47	1.36
5811828--5811886	11	5.1	11	72	25	50	45	8	1	44	1.44
5811862--5811916	13	4.1	13	78	15	58	54	5	0	40	1.23
5811932--5811967	11	3.3	11	88	0	54	52	13	2	30	1.55
5815519--5815580	20	3.0	20	88	4	97	30	3	20	45	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5822998--5823048	19	2.6	21	78	15	63	47	7	11	33	1.69
5826617--5826649	17	1.9	17	88	11	50	33	3	0	63	1.10
5831024--5831118	41	2.3	41	77	12	97	40	13	21	25	1.90
5831636--5831677	22	1.9	22	90	0	66	52	7	11	28	1.64
5832696--5832827	42	3.2	40	69	14	106	31	11	22	34	1.90
5832635--5832873	84	2.9	84	82	3	270	32	12	20	34	1.90
5841187--5841584	198	2.0	199	99	1	780	39	18	23	18	1.92
5841563--5841624	21	3.0	21	75	0	70	45	19	30	4	1.71
5841939--5842115	44	4.1	44	87	2	225	31	23	14	31	1.94
5841954--5842142	44	4.3	44	81	4	132	34	23	13	28	1.92
5841954--5842142	88	2.1	88	77	1	209	34	23	13	28	1.92
5842132--5842254	43	2.9	43	81	3	133	32	21	17	28	1.96
5842280--5842309	15	2.0	15	93	0	51	10	26	33	30	1.89
5844255--5844295	10	4.2	10	78	15	50	43	19	0	36	1.51
5846856--5847023	86	2.0	86	89	0	255	29	17	23	28	1.97
5857781--5857842	32	1.9	32	87	6	90	33	17	12	35	1.88
5862011--5862124	3	38.7	3	87	6	171	62	0	2	35	1.09
5862439--5863208	113	6.8	113	94	0	1283	29	18	14	38	1.89
5862439--5863208	341	2.3	339	95	1	1357	29	18	14	38	1.89
5863940--5864042	50	2.1	50	96	0	188	37	24	12	25	1.90
5863869--5864125	133	1.9	133	96	1	480	38	22	12	26	1.90
5863990--5864185	83	2.4	83	93	3	349	37	22	11	27	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5864129--5864241	56	2.0	56	94	0	199	37	22	8	31	1.85
5864046--5864323	139	2.0	138	94	3	488	37	22	11	28	1.89
5864185--5864590	82	5.0	83	94	4	727	37	22	12	27	1.90
5864547--5864689	50	2.9	50	93	0	250	39	23	13	24	1.90
5865448--5865492	18	2.6	17	80	10	56	53	8	6	31	1.58
5865815--5865857	16	2.8	16	89	3	70	4	11	0	83	0.78
5876390--5876431	18	2.4	17	84	11	50	69	4	0	26	1.08
5878586--5878671	3	28.7	3	87	0	127	61	0	3	34	1.13
5879571--5879620	25	2.0	25	100	0	100	28	8	32	32	1.86
5880577--5880606	15	2.0	15	93	0	51	50	0	0	50	1.00
5880662--5880712	20	2.6	19	81	9	66	62	0	1	35	1.06
5880892--5880989	15	7.0	14	71	16	60	65	0	4	30	1.11
5880886--5880961	23	3.3	23	78	14	86	63	0	5	31	1.17
5880892--5880933	3	14.3	3	80	14	52	69	0	4	26	1.08
5882178--5882257	3	27.0	3	87	7	119	65	0	1	33	1.01
5882840--5882879	14	3.1	13	82	10	55	60	0	0	40	0.97
5883719--5883743	11	2.3	11	100	0	50	8	28	32	32	1.86
5884347--5884390	3	14.3	3	81	13	54	61	2	0	36	1.09
5884351--5884398	15	3.1	15	80	19	55	64	4	0	31	1.12
5888961--5889033	33	2.2	33	80	0	92	19	21	17	41	1.91
5893866--5893911	22	2.1	23	88	11	71	28	0	4	67	1.10
5893856--5893912	21	2.7	22	76	17	66	35	0	3	61	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5894563--5894607	18	2.5	19	79	17	51	26	2	4	66	1.22
5902416--5902493	31	2.6	30	84	8	104	34	14	12	38	1.84
5912035--5912086	27	2.0	26	88	11	79	76	0	9	13	1.01
5912053--5912098	18	2.4	20	89	7	69	73	0	10	15	1.08
5912060--5912094	14	2.5	14	85	0	52	74	0	11	14	1.08
5912053--5912106	18	2.8	20	86	8	58	72	0	12	14	1.13
5914196--5914399	100	2.1	97	87	3	300	21	16	24	38	1.93
5915510--5915547	14	2.8	14	85	14	53	0	18	2	78	0.86
5925323--5925366	4	11.2	4	90	4	72	72	0	2	25	0.96
5925437--5925513	20	3.8	20	78	8	68	71	2	11	14	1.25

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33