genome.fa.s7823.2.7.7.80.10.50.1000.26.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007823.1 Hibiscus syriacus cultivar Beakdansim tig00110160_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  6287495

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   

This is table  26  of  33  ( 3920 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4725055--4725943	81	10.8	80	85	6	1043	31	22	11	34	1.90
4725656--4725845	96	2.0	96	98	0	371	33	24	12	30	1.91
4725576--4725928	177	2.0	176	94	0	625	32	24	11	32	1.91
4726104--4726352	57	4.4	57	91	0	383	36	17	10	35	1.84
4728713--4728750	20	1.9	20	84	10	51	34	5	26	34	1.79
4733205--4733241	17	2.3	17	86	9	51	24	10	13	51	1.73
4735958--4735991	16	2.1	17	88	5	52	29	11	5	52	1.61
4740014--4740067	24	2.3	23	81	15	65	64	0	3	31	1.11
4742251--4742371	13	9.7	13	70	19	80	49	1	6	42	1.38
4742285--4742435	2	77.0	2	70	22	90	49	1	6	42	1.37
4742296--4742436	9	14.8	9	71	19	83	50	1	6	41	1.36
4742252--4742435	29	6.4	29	70	18	111	48	2	7	41	1.42
4742563--4742713	2	72.0	2	70	18	94	45	3	7	42	1.52
4742762--4742992	2	113.5	2	67	18	104	46	4	8	41	1.53
4744015--4744757	265	2.8	261	82	5	886	39	10	15	34	1.82
4745278--4745541	102	2.6	101	81	4	275	37	13	10	39	1.78
4745911--4746279	77	4.8	76	82	3	370	37	17	7	36	1.79
4745985--4746107	40	3.2	40	68	13	103	37	17	5	39	1.73
4746055--4746183	40	3.3	40	61	6	93	37	18	6	37	1.76
4745911--4746279	154	2.4	153	82	6	426	37	17	7	36	1.79
4747778--4747907	24	5.4	24	81	6	147	40	17	13	28	1.88
4758291--4758352	3	21.3	3	80	9	67	29	3	0	67	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4758703--4758779	34	2.3	34	90	0	118	25	48	7	18	1.75
4763789--4763827	21	1.9	20	89	5	60	35	17	12	33	1.88
4764077--4764105	15	1.9	15	100	0	58	48	24	6	20	1.74
4764664--4764763	2	50.0	2	100	0	200	50	0	0	50	1.00
4768465--4768500	16	2.2	16	95	0	63	27	8	5	58	1.50
4770783--4770842	31	2.0	31	86	3	86	31	11	10	46	1.73
4771367--4771407	8	4.9	9	88	8	52	63	14	0	21	1.30
4781110--4781171	30	2.1	30	87	3	90	62	1	3	32	1.20
4782384--4782445	3	20.3	3	96	3	115	32	0	0	67	0.91
4788976--4789177	98	2.1	99	89	2	309	35	14	18	31	1.91
4790236--4790322	43	2.0	43	91	4	140	35	14	17	32	1.90
4791534--4792268	250	2.9	250	89	1	1051	32	16	16	34	1.92
4792280--4792430	62	2.4	62	89	0	239	28	23	15	32	1.95
4792396--4792459	29	2.2	29	97	0	119	37	20	17	25	1.93
4792334--4792522	92	2.1	91	84	3	245	29	22	14	33	1.94
4792281--4792584	154	2.0	153	90	1	484	27	23	15	33	1.94
4792425--4792878	185	2.4	184	86	4	606	27	22	14	36	1.93
4792425--4792878	62	7.3	62	86	2	590	27	22	14	36	1.93
4792887--4793108	61	3.6	61	76	6	214	27	20	17	34	1.95
4793074--4793138	29	2.2	29	81	10	71	29	20	21	29	1.98
4793471--4793512	3	14.3	3	85	5	50	35	0	2	61	1.09
4799470--4799503	13	2.5	14	85	4	52	73	5	2	17	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4801597--4801657	3	18.3	3	90	6	59	67	0	1	31	1.01
4801624--4801648	4	6.2	4	100	0	50	76	0	0	24	0.80
4803232--4803332	35	2.9	35	93	0	175	27	29	31	10	1.91
4803412--4803500	24	3.7	24	87	3	126	37	21	16	24	1.94
4807703--4807727	2	12.5	2	100	0	50	52	0	0	48	1.00
4807919--4808017	24	4.1	24	80	5	74	42	22	14	21	1.88
4807935--4808017	12	6.8	13	67	15	61	39	22	16	20	1.92
4807935--4808022	24	3.7	24	84	0	113	38	21	18	21	1.93
4811716--4812586	201	4.3	201	88	1	1187	28	20	16	33	1.95
4812635--4812852	86	2.7	78	77	11	233	24	22	24	28	1.99
4812688--4812858	86	2.0	86	87	0	243	22	23	23	29	1.99
4813228--4813313	32	2.7	32	89	3	120	32	20	17	29	1.96
4816190--4816239	18	2.8	18	81	0	64	28	34	22	16	1.95
4816986--4817038	21	2.5	22	84	6	74	26	28	18	26	1.98
4817073--4817114	22	2.0	22	86	9	61	28	28	14	28	1.95
4818672--4818706	12	3.0	11	88	12	52	85	0	0	14	0.59
4827221--4827255	12	2.9	12	91	0	52	60	0	0	40	0.97
4827225--4827264	12	3.3	12	92	0	62	57	0	0	42	0.98
4836100--4836149	23	2.0	24	81	11	57	62	2	2	34	1.18
4843072--4843115	23	1.9	23	90	0	70	15	27	27	29	1.96
4843205--4843259	23	2.4	23	100	0	110	14	29	27	29	1.95
4849633--4849676	23	1.9	23	90	0	70	18	29	25	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4850390--4850432	22	2.0	22	95	0	77	20	16	34	27	1.94
4857357--4857389	16	2.1	16	88	11	50	27	3	3	66	1.21
4857454--4857478	2	12.5	2	100	0	50	48	0	0	52	1.00
4857520--4857612	47	2.0	47	95	0	168	40	11	12	34	1.80
4860536--4860599	31	2.1	31	100	0	128	29	15	15	39	1.89
4863527--4863565	19	2.1	19	95	0	69	12	5	38	43	1.65
4865460--4865492	14	2.3	15	94	5	59	36	18	0	45	1.49
4869757--4869907	56	2.7	56	84	4	178	44	14	5	35	1.68
4869761--4870021	58	4.6	56	73	13	185	42	13	6	37	1.70
4873403--4873737	41	8.2	41	80	4	347	28	17	18	35	1.94
4875004--4875045	21	2.0	21	100	0	84	19	33	28	19	1.96
4876436--4876651	43	5.1	43	86	2	319	40	18	19	20	1.92
4882950--4883040	35	2.6	35	82	8	121	35	19	18	26	1.95
4887986--4888012	14	1.9	14	100	0	54	29	29	18	22	1.97
4891968--4892043	34	2.2	35	88	2	109	36	17	18	27	1.93
4895176--4895216	21	2.0	20	90	4	64	21	0	34	43	1.53
4899407--4900099	275	2.5	276	82	2	831	23	15	26	34	1.95
4899352--4900099	137	5.4	137	78	4	585	22	15	26	34	1.94
4900441--4900909	101	4.8	100	79	10	466	37	11	17	32	1.86
4900919--4901053	36	3.8	35	82	4	148	41	11	18	28	1.85
4900919--4901050	70	1.9	69	85	4	185	40	10	18	29	1.85
4904433--4904577	77	1.9	78	82	5	186	40	8	6	43	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4910837--4910878	20	2.1	20	95	0	75	19	21	38	21	1.94
4911592--4911629	16	2.4	16	90	0	58	57	26	0	15	1.38
4912706--4912767	30	2.1	30	96	0	115	35	11	16	37	1.84
4913585--4913641	23	2.6	22	78	13	64	22	22	29	24	1.99
4914873--4914901	13	2.2	13	100	0	58	10	27	0	62	1.28
4920406--4920463	14	3.9	15	80	19	61	74	0	1	24	0.92
4920407--4920464	30	1.9	31	86	10	84	74	0	1	24	0.92
4920419--4920463	21	2.1	21	88	8	65	75	0	0	24	0.80
4920406--4920464	9	6.3	9	80	16	50	74	0	1	23	0.91
4927011--4927045	16	2.2	16	95	5	63	28	11	5	54	1.59
4932773--4932802	3	10.0	3	100	0	60	33	0	0	66	0.92
4935059--4935092	13	2.6	13	100	0	68	73	5	8	11	1.24
4936189--4936236	25	1.9	25	83	8	62	22	6	6	64	1.39
4937777--4937810	17	1.9	17	88	5	50	58	2	2	35	1.28
4938153--4938270	45	2.7	44	73	12	107	73	0	4	22	1.00
4938185--4938268	14	6.1	14	69	17	52	72	0	2	25	0.96
4938181--4938261	17	4.6	17	69	22	60	71	0	2	25	0.98
4938638--4938737	2	50.0	2	96	4	184	50	1	49	0	1.07
4939522--4939954	37	11.7	35	79	15	300	45	7	3	44	1.49
4939558--4939946	74	5.3	71	85	7	435	44	7	4	43	1.50
4943505--4943544	3	13.7	3	89	5	64	62	0	0	37	0.95
4943784--4943839	16	3.3	16	68	22	51	19	23	8	48	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4943916--4944082	91	1.8	92	90	3	275	23	20	13	41	1.88
4945187--4945268	20	4.2	20	77	19	66	9	13	0	76	1.01
4945193--4945268	15	5.2	15	77	19	81	10	11	0	77	0.99
4945199--4945264	31	2.2	30	88	2	96	9	13	0	77	0.99
4945213--4945279	31	2.2	31	83	5	82	8	14	1	74	1.13
4958815--4958857	3	14.7	3	90	4	70	62	0	0	37	0.95
4960103--4960154	21	2.4	22	78	12	63	42	0	1	55	1.10
4960595--4960652	29	2.1	28	81	15	68	44	13	17	24	1.85
4960723--4960807	27	3.5	24	80	16	95	29	17	15	37	1.91
4964254--4964287	9	3.7	9	96	4	59	50	17	8	23	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33