genome.fa.s7823.2.7.7.80.10.50.1000.24.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007823.1 Hibiscus syriacus cultivar Beakdansim tig00110160_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  6287495

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   

This is table  24  of  33  ( 3920 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4475286--4475378	33	2.8	33	98	0	177	47	22	20	9	1.79
4475249--4475383	52	2.5	54	75	18	131	45	24	19	10	1.81
4475379--4475507	19	7.3	19	75	17	125	8	17	28	45	1.77
4475379--4475470	33	2.8	33	93	3	150	7	18	28	45	1.76
4475551--4475930	93	4.1	93	98	0	744	46	18	12	22	1.83
4475551--4475930	185	2.0	186	98	0	744	46	18	12	22	1.83
4477637--4477726	14	5.7	14	74	23	81	42	23	25	8	1.83
4477629--4477743	33	3.5	33	95	0	212	45	20	24	9	1.81
4477636--4477748	19	6.8	18	72	23	88	43	22	24	9	1.83
4477767--4477855	20	4.8	20	69	19	66	12	24	19	43	1.85
4477935--4478005	33	2.2	33	92	0	115	47	18	22	11	1.80
4478187--4478241	22	2.5	22	81	0	74	20	16	40	23	1.91
4478387--4478580	20	9.6	20	82	5	221	19	19	25	35	1.95
4478387--4478580	60	3.2	60	83	0	253	19	19	25	35	1.95
4478573--4478649	21	3.7	20	70	13	57	27	16	23	32	1.96
4478635--4478686	20	2.6	20	96	0	95	21	13	26	38	1.90
4483425--4483452	2	14.0	2	100	0	56	50	0	0	50	1.00
4483578--4483612	17	2.1	16	89	5	52	51	0	2	45	1.16
4483545--4483767	121	1.8	121	91	0	365	49	4	3	41	1.41
4484309--4484339	16	2.0	16	93	6	55	35	0	0	64	0.94
4484309--4484358	16	3.2	16	75	18	52	34	0	0	66	0.92
4485076--4485109	13	2.5	14	85	9	52	41	5	8	44	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4485198--4485293	17	5.5	17	71	9	77	44	1	0	54	1.07
4485264--4485294	14	2.1	15	94	5	55	45	0	0	54	0.99
4485289--4485352	29	2.2	29	88	0	92	54	1	1	42	1.19
4485300--4485358	29	2.0	29	83	0	73	61	0	1	37	1.07
4485348--4485427	26	3.1	25	74	16	65	53	2	0	43	1.14
4485380--4485455	29	2.5	28	81	16	73	50	2	0	47	1.15
4485410--4485455	16	2.8	16	81	15	58	50	2	0	47	1.13
4485955--4486006	14	3.7	14	73	0	50	57	13	13	15	1.65
4486273--4486303	2	15.5	2	100	0	62	48	0	0	51	1.00
4486768--4486829	24	2.6	23	80	7	70	17	17	14	50	1.79
4487120--4487153	14	2.4	14	95	0	59	47	29	11	11	1.76
4487457--4487654	105	1.9	106	93	1	344	27	12	18	42	1.85
4487760--4487803	21	2.1	21	91	0	70	47	25	0	27	1.52
4489549--4489586	20	2.0	18	90	10	58	18	26	15	39	1.91
4490432--4490592	64	2.5	63	84	9	186	35	19	19	26	1.95
4494671--4494827	64	2.5	63	82	10	169	36	19	18	26	1.94
4494708--4494831	64	1.9	65	87	8	182	37	18	17	26	1.93
4495510--4495573	30	2.1	30	85	0	83	18	18	28	34	1.95
4497816--4498166	83	4.2	83	72	7	280	30	18	20	31	1.96
4503774--4503867	24	4.0	24	86	5	129	36	24	21	18	1.95
4503774--4503867	47	2.0	47	85	6	127	36	24	21	18	1.95
4503778--4503900	23	5.3	23	87	4	108	34	25	22	17	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4503774--4503900	46	2.7	47	82	9	145	33	25	22	18	1.96
4506370--4506432	32	1.9	33	87	3	92	22	15	28	33	1.95
4507041--4507095	18	3.1	18	80	15	69	38	3	0	58	1.16
4507181--4507236	16	3.4	16	80	2	67	8	8	28	53	1.62
4507176--4507282	54	2.0	54	85	3	144	12	10	27	50	1.72
4507214--4507258	22	2.1	21	83	4	54	13	8	24	53	1.68
4508772--4508809	12	3.2	12	92	0	58	23	44	18	13	1.85
4508872--4508912	17	2.4	17	83	0	55	51	0	0	48	1.00
4509545--4509583	11	3.6	11	93	3	62	58	0	5	35	1.20
4509546--4509583	5	7.2	5	88	11	58	60	0	2	36	1.11
4509546--4509583	16	2.4	15	87	12	58	60	0	2	36	1.11
4510327--4510368	21	2.0	22	86	13	61	59	0	0	40	0.97
4510437--4510488	14	3.6	14	76	5	59	38	5	19	36	1.76
4510443--4510489	15	3.2	15	71	17	53	42	4	19	34	1.70
4510810--4510854	23	2.0	23	90	0	72	44	0	2	53	1.13
4510811--4510897	23	3.7	23	77	10	68	47	0	2	50	1.13
4511054--4511120	23	2.9	23	82	12	68	50	0	1	47	1.10
4514579--4514671	21	4.6	20	77	4	87	39	18	23	18	1.92
4514596--4514671	21	3.7	20	78	5	89	39	18	25	17	1.91
4514576--4514671	41	2.3	41	96	0	174	40	17	22	18	1.91
4514598--4514732	41	3.3	41	81	6	123	37	20	21	20	1.94
4514660--4514754	20	4.7	20	80	2	91	34	24	17	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4514942--4514985	22	2.0	22	95	0	79	20	45	15	18	1.85
4515249--4515286	20	1.9	20	88	0	58	13	15	21	50	1.78
4516606--4516650	18	2.5	18	81	0	54	26	40	15	17	1.90
4517120--4517165	20	2.3	20	88	0	65	36	26	21	15	1.93
4517159--4517249	32	2.8	33	89	3	139	48	25	16	9	1.77
4517159--4517254	14	5.7	18	72	20	73	46	25	17	10	1.79
4517280--4517346	19	3.5	19	87	4	98	14	22	25	37	1.93
4517292--4517346	20	2.8	19	91	5	92	16	23	25	34	1.95
4519343--4519396	14	3.5	14	77	22	63	48	20	20	11	1.80
4519324--4519401	33	2.4	33	91	0	120	42	21	23	12	1.87
4519420--4519457	20	1.9	20	94	0	67	15	21	23	39	1.92
4520408--4520740	166	2.0	167	99	0	659	32	16	19	31	1.94
4523200--4523292	33	2.8	33	86	4	134	44	19	20	16	1.87
4523233--4523344	52	2.2	52	96	0	206	43	19	19	16	1.88
4523287--4523386	33	3.0	33	85	11	159	40	20	22	18	1.92
4523201--4523383	85	2.2	84	89	5	271	43	19	21	15	1.88
4523379--4523421	20	2.2	20	87	4	61	16	18	23	41	1.89
4523407--4523440	14	2.4	14	85	0	50	8	23	20	47	1.78
4523562--4523598	14	2.6	14	91	0	65	45	24	0	29	1.53
4524981--4525063	42	2.0	42	83	2	105	24	15	38	21	1.92
4526990--4527086	33	2.9	33	87	1	131	39	25	23	11	1.88
4527062--4527139	39	2.0	38	92	2	129	48	21	19	10	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4526963--4527139	19	9.7	19	73	15	140	44	21	22	11	1.85
4527143--4527187	19	2.4	19	92	0	72	8	15	26	48	1.74
4527730--4527781	20	2.6	20	96	0	95	23	21	28	26	1.99
4528248--4528321	21	3.6	21	75	10	71	47	24	2	25	1.65
4528262--4528321	14	4.4	14	72	4	50	46	25	3	25	1.68
4528402--4528469	7	9.7	7	80	6	75	41	39	0	19	1.51
4529919--4530006	11	8.0	11	77	0	86	30	11	21	36	1.89
4529923--4530008	33	2.6	32	80	5	100	32	11	19	36	1.88
4544560--4544612	21	2.5	21	93	0	88	30	32	20	16	1.95
4544616--4545097	42	11.7	42	87	3	606	22	19	24	33	1.97
4544658--4545187	82	6.5	82	88	4	698	23	20	23	32	1.98
4544608--4545278	21	32.7	20	74	13	494	23	19	23	33	1.97
4544658--4545279	82	7.6	78	85	7	454	23	20	23	32	1.98
4545368--4545401	6	5.7	6	100	0	68	35	50	14	0	1.44
4546165--4546236	21	3.4	21	69	14	67	36	19	19	25	1.95
4546158--4546381	42	5.4	42	87	5	303	33	22	21	21	1.97
4546186--4546406	21	10.6	21	75	9	220	33	23	22	20	1.97
4546158--4546406	42	6.0	40	88	3	273	33	22	21	21	1.97
4547830--4547912	25	3.3	25	93	0	139	48	10	3	37	1.56
4549084--4549120	2	18.5	2	100	0	74	51	0	0	48	1.00
4550498--4550584	3	29.0	3	90	4	140	63	1	1	34	1.10
4550482--4550597	21	5.7	20	78	14	98	62	0	2	34	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4550495--4550596	24	4.1	27	90	7	114	62	0	1	34	1.13
4550962--4551136	91	1.9	92	90	1	280	24	20	14	40	1.90
4551173--4551229	16	3.4	16	69	21	53	19	24	8	47	1.77
4550721--4551692	332	2.9	331	91	2	1542	25	20	16	38	1.92
4551295--4551468	91	1.9	92	90	1	278	24	20	14	40	1.90
4552589--4552633	8	5.5	8	83	2	54	8	15	2	73	1.18
4552582--4552635	17	3.4	16	78	14	58	9	16	1	72	1.19
4552570--4552622	27	2.0	27	85	7	74	11	13	1	73	1.18
4560022--4560046	6	4.2	6	100	0	50	52	16	16	16	1.76
4567416--4567463	2	24.0	2	100	0	96	50	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33