genome.fa.s7823.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007823.1 Hibiscus syriacus cultivar Beakdansim tig00110160_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  6287495

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   

This is table  4  of  33  ( 3920 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
605060--605139	42	1.9	42	84	0	106	22	17	38	21	1.93
605589--605644	14	3.7	14	80	17	67	44	23	21	10	1.83
605570--605661	32	2.8	33	91	3	159	46	21	20	10	1.81
605533--605666	19	7.6	19	78	15	119	45	23	19	11	1.82
605662--605790	19	7.3	18	71	17	94	10	17	26	45	1.80
605662--605753	33	2.8	33	90	3	141	9	19	25	45	1.81
605834--606212	93	4.1	93	97	1	726	45	18	12	22	1.83
605834--606212	184	2.0	185	97	1	724	45	18	12	22	1.83
607911--608000	14	5.7	14	74	23	81	42	23	25	8	1.83
607903--608017	33	3.5	33	95	0	212	45	20	24	9	1.81
607910--608022	19	6.8	18	72	23	88	43	22	24	9	1.83
608034--608087	14	3.5	14	73	22	54	7	25	24	42	1.80
608018--608098	33	2.5	33	93	0	135	7	23	22	46	1.76
608074--608151	41	1.9	41	94	0	138	11	26	16	44	1.82
608075--608150	21	3.7	21	82	3	100	10	26	17	46	1.80
608233--608299	31	2.1	32	86	2	91	46	17	23	11	1.82
608477--608531	22	2.5	22	81	0	74	20	16	40	23	1.91
608677--608870	20	9.6	20	82	5	221	19	19	25	35	1.95
608677--608870	60	3.2	60	83	0	253	19	19	25	35	1.95
608857--608939	21	4.0	21	73	6	78	25	16	24	33	1.96
608837--608935	42	2.4	43	77	11	100	21	18	23	37	1.94
610385--610436	19	2.9	19	83	13	58	21	7	1	69	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
613226--613333	39	2.8	38	73	2	108	37	20	20	22	1.95
614072--614116	13	3.4	13	90	3	63	66	2	6	24	1.27
615957--616112	62	2.5	65	88	10	245	57	1	0	40	1.10
615978--616060	39	2.2	36	85	12	105	54	1	0	44	1.08
616015--616086	25	2.8	26	84	16	89	55	1	0	43	1.08
616074--616124	12	4.3	12	76	18	54	66	1	0	31	1.03
622184--622214	12	2.6	12	94	0	53	41	0	0	58	0.98
623920--623975	20	2.7	21	81	15	64	57	5	14	23	1.58
623925--623974	19	2.6	19	82	17	59	58	4	14	24	1.53
623926--623985	20	3.0	20	79	16	61	55	6	11	26	1.60
624094--624504	189	2.2	191	83	5	528	47	9	4	39	1.55
625984--626017	14	2.4	14	85	0	50	2	38	23	35	1.70
629905--629931	2	13.5	2	100	0	54	48	0	0	51	1.00
634791--635424	125	5.0	128	84	3	705	34	16	25	23	1.95
636537--636572	11	3.4	11	92	3	56	91	8	0	0	0.41
636540--636576	7	5.4	7	87	12	51	89	10	0	0	0.49
636538--636576	9	4.3	9	87	12	62	89	10	0	0	0.48
636650--636839	36	5.3	36	88	5	237	36	25	18	18	1.94
636646--636873	36	6.4	36	85	4	232	36	24	18	20	1.94
637242--637679	51	8.5	51	90	3	655	32	18	23	25	1.97
637653--637969	55	5.8	55	88	6	441	29	14	27	28	1.95
637655--637969	163	1.9	165	87	8	464	30	14	27	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
637653--637969	108	2.9	108	89	5	467	29	14	27	28	1.95
641661--641693	3	11.3	3	87	6	50	69	3	0	27	1.03
641658--641693	14	2.5	14	90	4	54	69	2	0	27	1.02
641886--642217	131	2.5	133	85	2	427	26	16	31	25	1.96
642241--642426	68	2.8	66	85	2	246	39	13	20	25	1.90
642241--642452	68	3.2	65	81	8	234	40	13	19	26	1.89
642576--642742	37	4.6	36	86	9	223	37	14	17	29	1.90
643920--643975	7	8.0	7	73	15	53	0	14	5	80	0.88
643914--643953	13	2.8	13	85	14	53	0	12	5	82	0.82
643906--643995	23	3.8	23	80	5	90	3	15	5	75	1.12
643912--643995	26	3.4	25	80	11	93	2	15	5	76	1.09
648939--648974	3	12.3	3	88	5	56	66	0	2	30	1.06
648936--648974	20	2.0	20	94	0	69	66	0	2	30	1.05
648942--648974	17	1.9	17	93	0	57	66	0	3	30	1.06
651957--652136	91	2.0	91	91	0	288	26	22	12	39	1.89
652443--652557	36	3.2	36	71	4	97	37	8	20	33	1.84
652471--652666	79	2.6	74	82	8	225	33	12	21	32	1.90
652755--652838	42	2.0	42	90	4	134	32	20	22	25	1.98
653029--653109	42	1.9	42	92	0	135	29	22	23	24	1.99
653046--653111	20	3.2	20	66	16	53	31	21	22	24	1.98
652707--653663	274	3.5	274	90	2	1494	33	19	17	28	1.95
654378--654445	34	2.0	34	100	0	136	41	14	20	23	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
659150--659191	20	2.1	20	100	0	84	26	21	9	42	1.83
673915--674076	64	2.5	63	87	5	220	31	17	12	37	1.88
675671--675725	10	5.2	10	85	14	67	78	0	9	12	0.97
675684--675725	6	7.5	6	79	15	54	76	0	11	11	1.03
675671--675725	21	2.6	21	88	8	76	78	0	9	12	0.97
677425--677987	85	6.6	85	83	3	389	26	17	21	33	1.96
677491--678001	85	6.0	85	87	0	700	26	18	21	33	1.96
691033--691066	2	17.5	2	93	6	61	50	0	0	50	1.00
691017--691230	94	2.2	96	89	5	344	48	11	10	30	1.72
695629--695721	21	4.5	21	81	4	109	39	17	24	18	1.91
695710--695803	20	4.7	20	80	2	89	34	24	18	23	1.96
695629--695721	41	2.3	41	98	0	177	39	17	24	18	1.91
695707--695784	41	1.9	41	86	0	111	39	21	16	21	1.92
695629--695757	20	6.3	20	70	11	66	41	17	21	19	1.91
696358--696402	19	2.4	19	88	0	63	48	26	13	11	1.75
696398--696582	19	10.1	19	75	14	165	12	22	22	43	1.86
696398--696487	39	2.3	38	92	1	144	12	20	22	45	1.83
696423--696498	39	1.9	39	86	5	109	9	19	26	44	1.80
696470--696557	33	2.6	33	92	1	140	11	25	25	38	1.89
696525--696582	20	2.9	20	80	10	64	13	24	18	43	1.87
698583--698705	42	2.9	42	80	2	122	22	36	17	22	1.95
698639--698705	21	3.2	21	66	6	55	23	35	20	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
700068--700103	14	2.6	14	95	0	63	30	0	25	44	1.54
700282--700412	19	7.7	19	64	23	85	16	22	18	42	1.88
700286--700412	33	3.9	32	84	8	175	16	22	18	42	1.89
700279--700411	66	2.0	66	94	0	230	18	22	18	41	1.90
702703--702727	12	2.1	12	100	0	50	0	28	0	72	0.86
702902--702955	24	2.2	24	90	0	81	38	20	16	24	1.92
703828--703925	20	4.9	20	94	0	160	36	21	23	18	1.95
703944--704021	33	2.4	33	88	0	111	12	21	21	43	1.86
703944--703995	14	3.2	16	70	24	54	11	21	19	48	1.80
706011--706077	19	3.5	19	79	4	80	37	22	23	16	1.94
706066--706123	14	3.9	14	79	16	71	48	25	17	8	1.75
706050--706128	32	2.4	33	95	2	142	46	24	18	10	1.80
706135--706230	19	5.6	17	73	21	78	11	18	21	47	1.80
706157--706214	14	3.9	14	81	16	71	8	17	24	50	1.74
706140--706230	32	2.8	33	91	3	148	10	17	21	49	1.77
706224--706269	20	2.3	20	88	0	65	15	21	26	36	1.93
706742--706786	18	2.5	18	85	0	63	13	15	42	28	1.85
708105--708142	20	1.9	20	88	0	58	50	21	15	13	1.78
708406--708449	22	2.0	22	95	0	79	18	15	45	20	1.85
708657--708734	41	1.9	41	86	0	111	21	16	21	39	1.92
708617--708731	20	5.7	20	76	5	79	24	17	22	35	1.95
708657--708752	41	2.3	41	80	3	104	20	19	21	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
715438--715487	20	2.5	20	77	9	57	44	4	2	50	1.32
716090--716151	29	2.1	29	90	0	97	27	22	14	35	1.93
717679--717740	20	3.0	20	74	6	61	25	8	30	35	1.85
717750--717879	54	2.3	54	85	7	163	29	21	21	27	1.99
718438--718533	23	4.4	22	78	17	85	19	20	27	32	1.97
718439--718520	23	3.7	23	82	12	100	18	23	26	31	1.97
721303--721336	15	2.3	15	94	0	59	32	32	20	14	1.93
721421--721501	29	2.8	29	96	3	146	17	22	16	44	1.86
721878--722034	64	2.5	63	81	8	192	27	17	18	36	1.94
728339--728419	29	2.8	29	94	3	137	18	22	14	44	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33