genome.fa.s7832.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007832.1 Hibiscus syriacus cultivar Beakdansim tig00110174_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4020056

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   

This is table  10  of  21  ( 2482 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1908298--1908483	64	2.9	63	75	10	189	41	2	5	50	1.39
1908424--1908521	37	2.6	37	80	19	114	39	2	4	54	1.31
1908424--1908522	39	2.6	37	79	20	107	39	2	4	54	1.31
1908468--1908546	38	2.1	37	83	4	95	39	1	3	55	1.26
1909026--1909064	19	2.0	20	85	5	53	61	28	2	7	1.37
1909934--1909964	2	15.5	2	100	0	62	48	0	0	51	1.00
1910053--1910113	26	2.3	26	83	8	70	9	13	3	73	1.20
1910544--1910594	24	2.1	24	88	0	75	9	15	19	54	1.68
1914696--1914808	51	2.2	50	85	4	156	16	35	29	18	1.93
1915017--1915055	18	2.2	18	90	4	62	30	2	2	64	1.21
1916013--1916043	12	2.6	12	94	0	53	29	29	6	35	1.82
1920561--1920618	26	2.2	27	82	11	68	36	1	5	56	1.32
1921959--1921994	2	18.0	2	100	0	72	50	0	0	50	1.00
1922325--1922364	21	1.9	21	89	0	62	25	7	15	52	1.68
1922925--1922974	25	2.0	26	84	4	66	48	4	0	48	1.20
1922961--1923012	26	2.0	27	84	3	70	40	0	1	57	1.10
1924727--1924780	17	3.3	17	76	10	58	33	3	12	50	1.59
1936273--1936342	30	2.2	32	80	11	83	65	4	0	30	1.11
1937642--1937726	19	4.3	19	75	13	66	58	2	1	37	1.18
1937944--1938019	2	39.0	2	94	5	138	50	0	0	50	1.00
1938728--1938771	23	1.9	23	90	0	70	22	13	9	54	1.67
1939149--1939293	8	17.4	8	69	11	53	73	1	4	20	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1939151--1939206	14	3.9	14	75	11	60	73	1	1	23	1.03
1939222--1939263	7	5.7	7	86	8	57	78	0	0	21	0.75
1939222--1939263	15	2.9	14	82	10	57	78	0	0	21	0.75
1940970--1942690	84	20.9	80	82	5	1787	24	18	23	33	1.96
1940970--1942690	83	20.9	83	85	2	2019	24	18	23	33	1.96
1940970--1942690	500	3.5	499	85	3	2221	24	18	23	33	1.96
1943820--1944082	95	2.7	95	86	3	339	33	17	16	32	1.93
1947801--1947842	18	2.3	18	95	0	75	16	47	7	28	1.73
1952458--1952647	60	3.2	59	77	8	161	37	4	26	31	1.77
1954474--1954526	22	2.5	21	73	11	54	49	5	0	45	1.26
1954571--1954644	34	2.2	34	92	0	130	41	0	9	48	1.35
1955122--1955173	23	2.3	23	89	0	77	40	7	19	32	1.80
1955247--1955963	198	3.6	195	82	7	785	30	14	14	39	1.87
1960146--1961452	404	3.3	401	88	3	1925	31	16	13	39	1.87
1960081--1961452	602	2.3	600	82	4	1600	31	16	13	38	1.87
1960080--1961452	200	6.8	198	80	5	1452	31	16	13	38	1.87
1962961--1963001	3	13.7	3	89	0	64	34	29	0	36	1.58
1962970--1963021	18	2.9	18	88	0	68	25	28	3	42	1.72
1962962--1963019	12	4.8	12	86	0	62	27	29	1	41	1.66
1965029--1965070	21	2.0	21	90	0	66	45	11	16	26	1.82
1964807--1965174	179	2.1	178	85	2	488	29	17	15	37	1.91
1967140--1967199	18	3.3	18	84	9	86	5	40	0	55	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1967140--1967206	18	3.8	17	80	9	80	7	35	0	56	1.27
1967382--1967481	33	3.0	33	94	0	173	23	48	1	28	1.58
1967515--1967558	21	2.1	21	91	0	70	13	31	11	43	1.80
1969944--1970395	184	2.5	184	87	1	624	26	16	15	41	1.88
1979001--1979058	30	2.0	29	89	3	89	24	15	12	48	1.79
1984960--1985006	18	2.7	18	90	3	69	34	6	31	27	1.82
1985306--1985902	246	2.4	242	82	12	780	40	20	12	26	1.88
1986413--1986466	23	2.5	21	77	17	56	33	16	16	33	1.92
1986770--1986810	18	2.3	18	87	8	57	17	0	12	70	1.16
1987425--1987453	15	1.9	15	100	0	58	34	10	27	27	1.89
1988642--1988676	12	2.8	13	86	8	54	45	8	5	40	1.58
1990356--1990403	2	24.0	2	100	0	96	50	0	0	50	1.00
1997412--1997458	15	3.1	15	93	0	76	6	14	68	10	1.38
1999964--2000024	26	2.4	26	79	15	65	52	1	3	42	1.27
2000811--2000863	22	2.4	22	100	0	106	28	35	7	28	1.84
2007029--2007090	21	3.0	21	87	0	88	22	17	25	33	1.96
2007029--2007112	44	2.0	43	88	4	125	20	20	26	33	1.97
2027830--2027878	20	2.5	20	90	6	73	46	4	18	30	1.67
2028017--2028089	37	2.0	37	84	10	96	50	2	0	46	1.15
2028399--2028509	52	2.2	51	86	4	152	30	28	13	27	1.94
2040566--2040636	24	3.0	24	87	2	99	47	18	16	16	1.82
2040578--2040636	12	5.0	12	74	10	59	47	18	16	16	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2043597--2043626	13	2.3	13	94	0	51	43	20	20	16	1.88
2049452--2049501	25	2.1	23	85	7	64	30	2	10	58	1.42
2049473--2049539	23	3.0	23	80	8	77	25	5	8	59	1.50
2059458--2060038	285	2.0	285	93	0	982	35	14	19	31	1.91
2060970--2061017	20	2.4	20	82	0	60	31	18	20	29	1.97
2061818--2061848	15	2.1	15	94	5	55	25	3	6	64	1.33
2063181--2063228	7	6.4	7	81	9	51	35	2	0	62	1.07
2064094--2064129	4	9.0	4	100	0	72	25	50	0	25	1.50
2066349--2066387	18	2.1	19	85	4	53	66	0	7	25	1.18
2067486--2068034	132	4.1	132	86	2	697	29	20	19	29	1.98
2068033--2068476	126	3.6	128	83	5	543	27	18	20	32	1.96
2078693--2078720	3	9.3	3	100	0	56	64	0	0	35	0.94
2082164--2082231	25	2.8	25	93	6	115	35	20	0	44	1.52
2082484--2082520	19	1.9	19	100	0	74	27	35	21	16	1.94
2082486--2082527	19	2.2	19	91	0	66	35	30	19	14	1.91
2085847--2085956	17	6.2	18	81	7	109	32	8	11	47	1.70
2085847--2085948	35	2.9	36	85	7	138	32	7	11	48	1.69
2085864--2085956	18	5.2	18	84	6	109	30	7	13	48	1.71
2087233--2087679	233	1.9	233	86	0	633	34	24	15	25	1.95
2088725--2088767	6	7.5	6	84	10	63	83	0	13	2	0.74
2088725--2088767	11	3.8	11	90	9	61	83	0	13	2	0.74
2088726--2088767	17	2.5	17	96	0	75	83	0	14	2	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2089366--2089484	2	62.0	2	79	14	135	46	0	3	50	1.18
2093222--2093263	19	2.2	19	95	0	75	35	14	2	47	1.57
2098339--2098452	19	6.3	19	77	14	68	20	5	0	73	1.07
2098358--2098681	14	21.3	15	67	22	89	18	6	3	72	1.20
2098358--2098739	5	74.6	5	66	22	113	17	6	3	72	1.19
2098358--2098725	18	20.2	17	68	22	107	17	6	2	72	1.19
2098339--2098433	36	2.7	35	80	15	106	18	5	1	74	1.06
2098511--2098739	9	22.7	10	67	21	63	15	6	3	74	1.17
2098511--2098726	12	18.8	11	64	25	51	15	6	3	74	1.16
2098561--2098602	9	4.7	9	94	5	68	14	7	0	78	0.95
2098621--2098744	48	2.5	49	75	11	137	16	7	2	74	1.15
2104800--2104838	20	2.0	20	90	5	62	20	15	20	43	1.88
2104883--2104928	12	3.6	12	81	16	56	45	17	19	17	1.85
2104889--2104929	12	3.1	13	80	19	57	46	14	17	21	1.84
2107223--2107262	21	1.9	21	94	0	71	30	15	7	47	1.72
2107257--2107355	33	3.0	33	94	1	164	32	7	15	45	1.73
2107591--2107647	21	2.7	21	91	0	96	19	26	26	28	1.99
2107813--2107868	15	3.6	15	79	9	67	32	12	12	42	1.80
2107832--2107865	18	1.9	18	94	5	61	38	11	11	38	1.79
2107950--2107981	16	2.0	17	88	11	50	43	21	21	12	1.86
2110961--2111016	25	2.3	24	84	9	69	60	1	0	37	1.07
2110972--2111023	25	2.0	26	85	3	70	55	0	1	42	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2111179--2111252	18	4.1	18	89	6	123	47	0	0	52	1.00
2111190--2111245	11	5.8	11	69	30	56	46	0	0	53	1.00
2112198--2112291	31	3.0	31	78	4	82	37	7	2	53	1.41
2112334--2112387	26	2.0	26	85	3	72	40	5	3	50	1.44
2112459--2112531	32	2.3	32	83	6	96	50	2	6	39	1.43
2112595--2112638	20	2.1	21	87	4	63	45	2	6	45	1.42
2120336--2120406	10	7.3	10	68	23	53	9	12	21	56	1.65
2120342--2120416	16	4.7	16	93	0	132	9	12	21	57	1.62
2120480--2120510	16	1.9	16	93	0	53	9	9	19	61	1.54
2124314--2124358	23	2.0	23	82	8	56	31	17	2	48	1.59

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21