genome.fa.s7832.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007832.1 Hibiscus syriacus cultivar Beakdansim tig00110174_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4020056

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   

This is table  6  of  21  ( 2482 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1116925--1116974	20	2.5	20	100	0	100	42	8	22	28	1.81
1118452--1118503	22	2.4	22	96	0	95	25	7	13	53	1.65
1119807--1119994	94	2.0	94	92	0	313	30	23	21	24	1.99
1120240--1120283	21	2.1	21	95	0	79	38	0	0	61	0.96
1122687--1122764	22	3.6	22	75	11	72	32	5	10	52	1.57
1124929--1124969	7	6.0	7	91	5	57	31	29	24	14	1.95
1124965--1124997	17	1.9	17	100	0	66	18	24	39	18	1.92
1132269--1132321	19	2.7	19	80	11	63	30	26	22	20	1.98
1134323--1134363	22	1.9	21	90	5	64	70	4	0	24	1.06
1135624--1135674	16	3.2	16	75	8	50	25	21	17	35	1.95
1135695--1135750	16	3.5	16	78	4	51	28	16	10	44	1.80
1135886--1135941	25	2.4	22	77	19	60	57	1	3	37	1.27
1135980--1136033	23	2.3	24	93	3	92	42	1	9	46	1.46
1136215--1136253	11	3.5	11	86	6	51	53	2	2	41	1.28
1136215--1136247	12	2.8	12	90	9	50	57	0	3	39	1.14
1136878--1136946	14	5.4	14	67	19	60	26	8	15	49	1.74
1136880--1136957	25	3.1	25	92	0	120	25	8	15	50	1.73
1137137--1137239	6	18.3	6	70	22	73	50	1	0	46	1.19
1137118--1137241	29	4.2	28	75	17	108	51	2	0	45	1.20
1137131--1137336	29	7.0	30	73	10	142	49	2	2	45	1.30
1137244--1137304	21	2.9	21	82	2	77	45	3	3	47	1.35
1137170--1137400	110	2.0	110	79	10	243	48	4	3	42	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1137318--1137359	22	2.0	21	90	9	68	50	9	4	35	1.56
1137347--1137399	21	2.5	21	81	0	70	47	7	5	39	1.56
1137579--1137640	24	2.6	24	78	0	79	14	11	17	56	1.67
1138295--1138345	16	3.3	15	86	5	68	13	9	15	60	1.58
1138407--1138438	15	2.1	16	94	5	57	6	12	21	59	1.55
1138535--1138661	20	6.2	21	77	13	106	42	7	7	43	1.59
1138600--1138658	11	5.7	11	78	15	63	40	8	5	45	1.56
1138645--1138718	37	2.1	36	87	5	105	39	9	9	41	1.70
1138925--1139003	2	41.5	2	71	18	62	44	5	2	48	1.38
1139039--1139065	13	2.1	13	100	0	54	29	7	14	48	1.71
1139295--1139358	19	3.3	19	88	2	92	25	31	0	43	1.55
1139302--1139361	19	3.1	19	90	2	93	30	28	0	41	1.56
1139307--1139368	19	3.4	18	88	4	81	27	30	0	41	1.56
1139345--1139399	29	2.0	29	85	7	78	27	27	0	45	1.54
1141337--1141373	15	2.4	16	82	13	51	35	0	0	64	0.94
1141308--1141374	26	2.5	28	78	9	77	32	0	4	62	1.15
1141337--1141385	12	3.9	12	81	13	55	36	0	0	63	0.95
1143021--1143064	21	2.1	21	91	0	70	34	36	13	15	1.87
1143370--1143417	15	3.4	14	88	5	53	39	0	43	16	1.48
1143380--1143417	15	2.5	15	95	0	67	36	0	47	15	1.46
1148074--1148116	16	2.7	16	89	7	61	23	11	20	44	1.84
1148399--1148451	21	2.5	21	90	3	79	32	1	13	52	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1149195--1149224	13	2.2	14	94	5	53	30	6	13	50	1.67
1150115--1150166	18	2.9	19	70	30	51	53	0	5	40	1.25
1153568--1153614	17	2.7	17	84	12	60	21	0	0	78	0.75
1153569--1153609	18	2.3	18	87	8	57	17	0	0	82	0.66
1153577--1153616	18	2.2	19	90	4	64	22	0	0	77	0.77
1153914--1153944	15	2.1	15	100	0	62	51	6	12	29	1.65
1155312--1155761	54	8.4	54	86	0	533	27	18	20	33	1.96
1155314--1155761	162	2.8	162	87	2	632	27	18	20	33	1.96
1157528--1157553	10	2.6	10	100	0	52	7	0	19	73	1.07
1160147--1160219	30	2.5	30	81	2	85	31	15	1	52	1.51
1161274--1161313	19	2.0	20	85	4	55	40	2	2	55	1.27
1162543--1162574	2	16.0	2	93	0	55	50	3	0	46	1.17
1171460--1171498	20	2.0	20	89	0	60	56	7	10	25	1.59
1172540--1172564	13	1.9	13	100	0	50	64	20	8	8	1.46
1180769--1180824	25	2.2	26	84	9	71	60	7	3	28	1.40
1190799--1191017	111	2.0	111	89	3	334	32	17	16	32	1.93
1205979--1206051	36	2.0	36	94	0	128	26	39	10	23	1.87
1212451--1212679	110	2.1	109	92	4	381	47	4	3	44	1.39
1213555--1213622	34	2.0	34	91	0	109	23	16	20	39	1.91
1214043--1214369	178	1.8	181	88	5	511	39	19	15	24	1.91
1231700--1231741	22	2.0	22	85	4	59	40	9	4	45	1.58
1237256--1237290	15	2.3	15	90	0	52	40	31	11	17	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1238994--1239048	19	2.8	19	86	2	74	25	32	27	14	1.95
1239002--1239077	29	2.6	31	84	14	92	30	30	25	14	1.95
1238995--1239077	10	8.7	9	73	12	67	28	32	24	14	1.94
1239014--1239077	20	3.3	19	82	8	76	31	31	23	14	1.94
1246238--1246307	9	7.3	9	73	12	59	30	30	24	15	1.96
1247658--1247754	2	52.0	2	68	13	64	50	0	0	49	1.00
1271639--1271664	6	4.3	6	100	0	52	15	0	0	84	0.62
1274511--1274572	22	3.3	18	79	18	72	14	1	12	70	1.23
1274466--1274588	26	4.8	25	68	16	65	17	4	10	67	1.37
1274534--1274584	22	2.4	22	83	3	59	15	3	13	66	1.39
1279369--1279426	29	2.0	28	86	3	80	50	12	6	31	1.66
1279266--1279577	137	2.3	137	82	8	375	43	9	9	36	1.71
1279500--1279563	29	2.2	29	91	0	101	45	9	9	35	1.69
1284773--1285212	122	3.6	122	90	3	627	43	10	9	35	1.72
1284773--1285212	120	3.6	118	86	7	551	43	10	9	35	1.72
1285932--1285957	4	6.5	4	100	0	52	76	0	23	0	0.78
1290310--1290342	16	2.1	16	100	0	66	45	18	0	36	1.49
1292603--1292654	23	2.3	23	80	6	72	17	21	40	21	1.91
1301821--1301848	5	5.6	5	100	0	56	82	0	0	17	0.68
1302035--1302072	20	1.9	20	94	0	67	44	5	23	26	1.74
1305997--1306073	29	2.6	30	81	4	93	49	25	7	16	1.73
1305997--1306054	30	1.9	31	89	3	91	43	27	6	22	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1305997--1306073	30	2.6	31	81	4	88	49	25	7	16	1.73
1306620--1306666	12	3.9	12	85	0	58	4	68	8	19	1.33
1306614--1306645	15	2.1	15	94	0	55	0	68	15	15	1.21
1306613--1306666	6	9.5	6	80	11	51	3	66	9	20	1.35
1312684--1312991	101	3.0	102	82	7	331	37	12	17	32	1.88
1312968--1313144	30	5.5	30	66	19	106	41	13	15	29	1.85
1313015--1313122	36	3.2	36	67	20	104	42	15	14	26	1.86
1313064--1313198	36	3.9	36	73	14	122	41	14	17	27	1.87
1312934--1313179	66	3.7	66	88	0	366	40	14	16	28	1.88
1314069--1314221	65	2.4	65	83	2	182	30	20	17	31	1.96
1320020--1320099	23	3.6	22	73	13	83	27	23	21	27	1.99
1334652--1334808	65	2.4	65	84	2	199	28	20	19	32	1.97
1339955--1339988	15	2.2	16	89	5	52	29	17	0	52	1.45
1340009--1340048	20	2.0	20	85	5	53	25	12	0	62	1.30
1340584--1340764	90	2.0	90	94	2	319	32	15	16	36	1.90
1341133--1341167	15	2.2	17	90	10	56	57	8	5	28	1.52
1343868--1343947	41	2.0	41	89	0	124	45	13	12	28	1.80
1345813--1345855	22	2.0	21	86	8	61	74	2	0	23	0.93
1350153--1350183	2	15.5	2	100	0	62	48	0	0	51	1.00
1353988--1354023	17	2.1	17	100	0	72	27	5	11	55	1.57
1356080--1356140	27	2.2	28	82	8	72	26	44	14	14	1.84
1362607--1362776	76	2.2	76	84	6	211	30	14	14	40	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1362777--1363124	39	9.1	39	92	1	510	27	19	16	35	1.94
1363161--1363214	15	3.7	15	74	18	60	22	22	18	37	1.95
1363144--1363255	28	3.3	36	72	21	78	27	22	14	35	1.93
1363066--1363280	66	3.3	63	83	8	263	29	20	13	35	1.92
1363241--1363316	31	2.5	30	80	14	93	31	18	13	36	1.89
1363204--1363425	96	2.3	97	82	6	279	29	20	12	36	1.90
1363329--1363394	30	2.2	30	94	0	114	31	21	15	31	1.94
1363329--1363411	30	2.8	30	88	3	105	31	21	13	33	1.92
1363709--1364069	91	4.0	91	89	0	551	37	16	22	24	1.93
1364353--1364406	27	2.0	27	88	0	81	24	42	16	16	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21