genome.fa.s7832.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007832.1 Hibiscus syriacus cultivar Beakdansim tig00110174_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4020056

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   

This is table  8  of  21  ( 2482 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1578043--1578098	3	18.7	3	100	0	112	33	0	0	66	0.92
1580447--1580593	79	1.9	79	98	0	285	49	14	12	23	1.77
1582702--1582737	15	2.4	15	95	0	63	30	27	11	30	1.91
1586285--1586442	15	10.2	15	86	8	210	47	0	1	50	1.12
1586445--1586487	22	2.0	22	100	0	86	34	0	13	51	1.42
1586422--1587119	32	23.4	32	68	24	279	33	0	13	52	1.44
1586422--1586916	54	9.1	54	75	13	444	33	0	13	52	1.42
1586499--1586541	22	2.0	22	100	0	86	34	0	13	51	1.42
1586585--1586670	22	3.7	22	77	11	100	30	0	16	53	1.43
1586582--1586701	48	2.5	48	97	0	222	30	0	16	53	1.44
1586632--1586996	80	4.5	80	87	6	536	32	0	14	52	1.46
1586713--1586755	22	2.0	22	90	0	68	39	0	9	51	1.34
1586521--1587230	246	3.0	242	80	12	870	33	0	13	52	1.45
1586735--1586816	18	5.0	18	68	20	72	32	0	12	54	1.37
1586870--1586917	22	2.4	18	73	23	51	31	0	16	52	1.45
1586879--1586949	22	3.1	22	75	16	81	29	0	18	52	1.46
1586422--1587166	214	3.4	214	82	9	868	33	0	13	52	1.44
1586965--1587055	22	3.7	22	68	25	65	37	2	9	50	1.48
1586931--1587230	54	5.5	54	78	11	326	35	0	12	51	1.45
1587038--1587118	14	5.1	16	67	21	62	34	0	11	54	1.36
1587182--1587229	22	2.4	20	86	13	64	35	0	12	52	1.40
1587178--1587220	22	2.0	22	100	0	86	34	0	13	51	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1587245--1587303	31	1.9	31	89	0	91	44	6	6	42	1.57
1594880--1594951	20	3.5	20	70	26	69	19	26	19	34	1.96
1594863--1594954	42	2.2	42	100	0	184	17	28	20	33	1.95
1594863--1594931	22	3.2	22	67	29	67	17	24	23	34	1.96
1594943--1594989	20	2.6	18	81	15	60	34	31	10	23	1.89
1596617--1596681	26	2.5	26	87	5	96	33	27	20	18	1.96
1596613--1596692	26	2.8	29	77	14	94	33	27	18	20	1.96
1597286--1597320	16	2.2	16	89	0	52	28	0	0	71	0.86
1597628--1597687	23	2.6	23	100	0	120	40	6	0	53	1.27
1602739--1602801	31	2.0	31	87	6	92	46	14	22	17	1.84
1605293--1605389	48	2.0	48	100	0	194	29	22	18	28	1.97
1606373--1606467	48	2.0	48	95	0	172	22	20	28	29	1.98
1610725--1610789	3	21.7	3	80	12	62	61	0	30	7	1.24
1613786--1614486	114	6.2	115	78	5	624	40	13	10	35	1.78
1613786--1614488	227	3.1	225	82	4	815	40	13	10	35	1.78
1616089--1616148	29	2.1	29	90	6	95	41	3	16	38	1.65
1617971--1618181	36	5.9	36	96	0	386	26	15	16	42	1.87
1620256--1620313	22	2.6	23	88	5	91	67	1	13	17	1.32
1633302--1633350	13	3.8	13	91	5	82	44	2	12	40	1.53
1633302--1633350	25	1.9	26	91	4	82	44	2	12	40	1.53
1633302--1633357	25	2.2	25	87	6	76	44	3	10	41	1.56
1634812--1634868	13	4.4	13	82	6	71	40	8	5	45	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1634812--1634847	14	2.6	14	91	4	56	41	8	8	41	1.65
1634811--1634868	27	2.2	25	85	8	80	41	8	5	44	1.57
1635013--1635068	24	2.4	24	90	3	87	48	3	3	44	1.37
1635028--1635099	34	2.2	34	85	7	96	50	1	4	44	1.30
1635102--1635144	15	2.8	15	89	3	59	53	9	0	37	1.33
1635151--1635207	13	4.4	13	88	6	89	40	8	5	45	1.58
1635159--1635207	25	1.9	26	95	4	91	40	10	4	44	1.57
1635163--1635228	25	3.0	21	81	14	53	43	7	4	43	1.53
1636219--1636353	20	6.7	20	76	7	94	34	22	17	24	1.96
1636216--1636353	61	2.3	61	80	2	170	36	22	17	23	1.95
1636830--1636887	20	2.9	20	78	0	53	18	15	20	44	1.86
1637024--1637078	25	2.2	24	78	15	58	20	9	18	52	1.71
1638343--1638387	20	2.3	20	80	3	56	40	20	22	17	1.92
1638371--1638434	19	3.6	19	74	20	75	45	21	20	12	1.84
1638441--1638552	33	3.4	33	91	1	181	13	17	20	48	1.81
1638446--1638536	14	5.9	14	67	20	56	13	16	20	49	1.79
1638537--1638592	20	2.8	19	86	7	76	16	25	23	35	1.94
1639007--1639075	21	3.3	21	70	9	61	24	36	20	18	1.95
1640375--1640413	14	2.8	14	84	0	51	35	0	17	46	1.49
1640540--1640595	14	3.6	14	74	21	58	46	17	21	14	1.84
1640549--1640598	14	3.0	17	75	24	61	48	18	22	12	1.80
1640617--1640692	20	3.8	20	68	6	64	18	19	21	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1640906--1640975	20	3.3	20	76	6	68	20	15	21	42	1.88
1640920--1640984	23	3.0	22	71	8	62	21	16	21	40	1.92
1640984--1641035	20	2.5	21	87	3	70	21	23	17	38	1.93
1641232--1641265	12	2.9	12	86	4	52	17	41	5	35	1.74
1641822--1641875	24	2.2	24	90	0	81	22	16	20	40	1.91
1642050--1642086	12	3.1	12	100	0	74	72	0	27	0	0.84
1644369--1644476	33	3.3	33	84	5	155	42	19	23	14	1.88
1644382--1644480	19	5.7	19	64	22	65	43	19	22	15	1.87
1644480--1644551	19	4.1	18	74	18	71	13	22	19	44	1.86
1644654--1644691	14	2.6	15	87	8	60	44	23	0	31	1.54
1646038--1646104	21	3.2	20	70	4	53	20	20	34	23	1.97
1646038--1646160	42	2.9	40	79	7	111	23	18	35	21	1.95
1646378--1646562	91	2.0	90	89	6	282	47	17	12	22	1.82
1648296--1648332	14	2.6	14	100	0	74	40	24	27	8	1.83
1648323--1648406	19	4.7	19	80	14	106	45	20	22	11	1.83
1648272--1648406	52	2.7	49	86	7	175	42	20	25	11	1.85
1648272--1648401	33	3.9	33	76	8	138	43	20	24	10	1.84
1648402--1648468	19	3.5	18	80	11	71	10	16	25	47	1.78
1648994--1649045	20	2.6	20	87	6	70	23	19	23	34	1.96
1649012--1649268	20	12.6	20	76	11	175	25	20	19	34	1.96
1649012--1649268	61	4.2	60	69	8	189	25	20	19	34	1.96
1649135--1649310	21	8.5	21	72	8	92	32	19	21	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1649012--1649268	41	6.3	40	76	7	180	25	20	19	34	1.96
1651398--1651446	19	2.7	17	84	9	53	26	18	30	24	1.98
1651415--1651521	45	2.4	42	77	13	115	31	15	22	29	1.95
1651505--1651543	19	2.1	19	90	0	60	33	15	30	20	1.94
1651569--1651608	21	1.9	21	90	10	64	25	15	27	32	1.95
1654380--1654439	30	2.0	30	93	6	104	33	6	16	43	1.74
1654519--1654576	21	2.8	21	89	0	98	22	39	17	20	1.92
1654768--1654807	20	1.9	22	90	10	66	37	40	10	12	1.77
1655023--1655092	34	2.1	32	86	5	95	31	15	30	22	1.95
1655953--1656000	19	2.5	20	82	3	62	52	6	12	29	1.63
1657230--1657289	30	2.0	30	93	6	104	33	6	16	43	1.74
1657369--1657426	21	2.8	21	89	0	98	22	39	17	20	1.92
1657618--1657657	20	1.9	22	90	10	66	37	40	10	12	1.77
1659430--1659478	20	2.5	20	86	3	64	55	4	10	30	1.52
1661900--1661940	21	1.9	22	85	5	57	39	19	17	24	1.92
1668259--1668458	35	5.8	35	85	2	269	36	21	21	21	1.96
1671909--1671943	16	2.1	17	94	5	63	34	0	22	42	1.54
1677518--1677580	18	3.6	18	93	2	101	28	20	7	42	1.80
1678378--1678421	23	2.0	21	86	8	61	75	0	0	25	0.81
1682149--1682210	26	2.4	25	76	7	70	16	3	6	74	1.16
1685541--1685579	19	2.0	21	85	14	57	66	2	0	30	1.05
1686211--1686252	18	2.3	18	88	8	59	45	2	0	52	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1689759--1689792	17	2.0	17	94	0	59	32	5	11	50	1.63
1689791--1689863	29	2.5	29	93	4	121	41	21	16	20	1.90
1691273--1691328	18	3.1	18	94	0	103	33	16	32	17	1.92
1700770--1700804	18	2.0	18	88	5	54	48	0	20	31	1.50
1702445--1702755	80	3.8	80	84	3	383	22	20	24	31	1.98
1706080--1706113	18	1.9	18	88	5	52	50	0	20	29	1.49
1707759--1708063	80	3.8	80	86	3	391	22	21	23	32	1.98
1708980--1709043	3	21.7	3	96	3	121	34	0	0	65	0.93
1709562--1709611	12	4.2	12	79	5	57	76	2	20	2	0.99
1716227--1716268	4	11.0	4	90	10	70	50	26	0	23	1.50

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21