genome.fa.s7832.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007832.1 Hibiscus syriacus cultivar Beakdansim tig00110174_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4020056

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   

This is table  7  of  21  ( 2482 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1368316--1368362	23	2.0	23	100	0	94	36	25	8	29	1.86
1371458--1371505	3	16.0	3	91	0	78	62	2	0	35	1.07
1371663--1372121	76	6.0	76	96	1	823	35	22	20	21	1.96
1372797--1372851	22	2.5	22	90	0	92	38	14	12	34	1.84
1373213--1373333	54	2.3	54	87	4	167	23	19	15	40	1.90
1375472--1375697	114	2.0	114	93	0	389	30	20	15	32	1.94
1377996--1378049	26	2.0	27	96	3	101	3	16	11	68	1.33
1382691--1382743	20	2.6	22	77	11	60	67	0	5	26	1.12
1384811--1384858	3	16.0	3	91	0	78	62	2	0	35	1.07
1388718--1388792	23	3.2	23	67	29	68	48	4	9	38	1.54
1388709--1388802	47	2.0	47	100	0	188	48	6	8	36	1.59
1388966--1389038	37	2.0	37	94	0	128	23	6	9	60	1.52
1389611--1389703	30	3.0	31	83	9	120	21	18	17	43	1.89
1391073--1391116	18	2.4	18	92	0	70	15	11	15	56	1.66
1396503--1396546	20	2.2	20	87	4	61	36	11	2	50	1.51
1398438--1398463	6	4.3	6	100	0	52	84	0	0	15	0.62
1398572--1398604	16	2.1	16	88	11	50	27	0	6	66	1.15
1400051--1400083	10	3.4	10	83	8	50	81	0	6	12	0.85
1400051--1400091	19	2.2	19	95	0	73	78	0	4	17	0.93
1401627--1401673	20	2.3	21	89	7	71	65	0	2	31	1.04
1402072--1402177	36	2.9	36	92	0	176	38	15	23	22	1.92
1402091--1402154	21	3.3	21	65	24	59	39	12	23	25	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1402319--1403833	105	14.4	105	96	0	2654	23	18	24	33	1.97
1407515--1407556	20	2.1	20	95	0	75	78	0	4	16	0.91
1407476--1407588	29	3.9	28	70	20	72	70	0	11	17	1.15
1409091--1409137	20	2.3	21	89	7	71	65	0	2	31	1.04
1411726--1411964	120	2.0	119	94	4	419	40	14	17	28	1.88
1416471--1416707	118	2.0	119	94	4	417	41	13	16	29	1.85
1416837--1416861	12	2.1	12	100	0	50	20	16	24	40	1.91
1423089--1423206	21	5.7	21	70	6	71	34	26	17	21	1.95
1423194--1423402	20	10.4	20	82	5	226	36	26	17	19	1.94
1423918--1424103	20	9.3	20	85	4	232	34	26	18	20	1.96
1423217--1424618	701	2.0	701	98	0	2723	31	20	17	30	1.95
1424796--1424842	24	2.0	24	87	8	69	25	14	21	38	1.92
1425017--1425041	12	2.1	12	100	0	50	72	0	28	0	0.86
1427344--1427533	19	10.7	19	75	19	187	44	17	22	15	1.86
1427344--1427527	53	3.5	53	94	2	309	45	17	21	14	1.85
1427507--1427619	53	2.2	52	86	1	154	19	23	17	39	1.92
1427523--1427640	53	2.2	53	95	3	211	14	24	16	44	1.86
1427542--1427640	20	5.4	19	82	14	127	15	23	16	45	1.84
1427747--1427783	14	2.6	14	91	0	65	45	21	0	32	1.52
1427847--1427880	11	3.1	11	82	0	50	61	17	0	20	1.34
1429700--1429871	19	9.6	19	76	14	150	45	23	20	10	1.82
1429793--1429849	14	3.7	14	75	20	51	43	22	22	10	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1429774--1429866	33	2.8	33	95	0	168	46	21	21	10	1.81
1429883--1429941	14	3.9	14	76	20	64	6	16	28	47	1.72
1429867--1429990	33	3.7	33	91	1	185	8	17	27	45	1.78
1429867--1429958	19	5.4	18	72	24	83	7	17	28	46	1.75
1429916--1429972	14	3.7	14	72	20	51	8	22	24	43	1.81
1431909--1432015	19	5.7	20	77	15	104	47	17	22	12	1.81
1431907--1431971	21	3.1	21	86	4	105	49	15	24	10	1.76
1432034--1432088	14	3.6	14	73	21	56	9	23	21	45	1.80
1432016--1432095	33	2.4	33	93	0	133	10	21	21	47	1.79
1432076--1432149	21	3.5	21	80	7	96	12	21	18	47	1.81
1432229--1432299	33	2.2	33	97	0	133	47	18	23	9	1.78
1432251--1432299	14	2.8	19	65	28	54	46	20	24	8	1.77
1432233--1432289	14	3.7	14	70	20	51	45	21	24	8	1.80
1432671--1432863	20	9.6	20	84	5	228	18	19	27	35	1.95
1445493--1445537	14	3.2	14	84	9	56	22	33	35	8	1.85
1446829--1446886	22	2.6	21	83	5	62	53	3	1	41	1.28
1446871--1447019	17	8.4	17	72	19	117	48	0	2	48	1.17
1446838--1447001	76	2.1	76	88	5	242	50	1	2	45	1.22
1446838--1447001	38	4.3	37	82	4	175	50	1	2	45	1.22
1448754--1448815	16	3.8	17	73	14	58	50	25	1	22	1.59
1450619--1450700	22	3.7	22	72	3	65	19	23	31	25	1.98
1455438--1455497	23	2.9	19	83	11	57	16	26	33	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1455456--1455505	23	2.2	23	96	3	93	20	24	36	20	1.95
1455456--1455516	23	2.7	22	87	9	63	18	26	32	22	1.97
1464088--1464127	21	1.9	21	85	10	55	32	10	5	52	1.56
1472590--1472646	21	2.8	21	78	7	55	31	17	1	49	1.57
1472873--1472917	23	2.0	23	90	0	72	28	26	26	17	1.98
1477142--1477197	21	2.7	21	78	8	53	32	17	1	48	1.58
1477427--1477517	23	4.0	23	85	0	128	29	26	26	17	1.98
1477886--1477924	20	2.0	20	85	9	55	46	15	2	35	1.60
1480256--1480300	23	2.0	23	82	8	56	26	6	2	64	1.30
1481333--1481365	11	3.0	11	95	0	57	48	0	24	27	1.51
1487676--1487732	9	6.0	9	74	11	51	43	31	21	3	1.69
1488229--1488257	15	1.9	15	100	0	58	44	34	20	0	1.52
1488249--1488305	18	3.5	18	68	26	63	38	26	21	14	1.91
1488241--1488329	30	3.1	30	93	4	148	39	26	20	13	1.90
1488246--1488285	21	1.9	21	84	0	53	40	27	22	10	1.86
1488247--1488334	27	3.1	27	90	4	131	37	27	21	13	1.91
1488331--1488404	27	2.9	24	75	13	58	43	32	17	6	1.75
1494085--1494184	52	1.9	52	97	0	191	28	14	22	36	1.92
1499471--1499508	7	5.4	7	100	0	76	26	28	28	15	1.96
1499498--1499538	17	2.4	17	95	0	73	17	24	41	17	1.89
1499532--1499621	19	4.7	19	86	6	119	26	28	25	18	1.98
1499534--1499621	9	9.1	10	77	12	85	27	29	23	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1499540--1499621	29	2.8	30	76	12	57	26	28	25	19	1.99
1500624--1500662	18	2.1	19	85	4	53	66	10	10	12	1.44
1500469--1500918	224	2.0	224	99	0	891	37	20	15	27	1.92
1500848--1500886	18	2.1	19	85	4	53	66	10	10	12	1.44
1504084--1504219	65	2.1	64	86	4	184	28	22	18	30	1.97
1505000--1505103	39	2.7	39	89	0	154	46	22	10	21	1.81
1506529--1506764	118	2.0	114	86	4	330	30	13	3	52	1.57
1509958--1510006	20	2.5	20	82	0	62	36	20	10	32	1.86
1519243--1519294	24	2.1	25	92	3	88	32	7	9	50	1.64
1520748--1520780	14	2.2	16	89	10	52	24	0	0	75	0.80
1524826--1524868	23	1.9	22	85	4	59	41	4	2	51	1.35
1533327--1533366	19	2.2	19	86	4	55	52	0	2	45	1.14
1533326--1533367	18	2.3	18	80	8	50	50	0	2	47	1.14
1536306--1536514	43	4.9	43	83	4	217	24	15	24	35	1.94
1536502--1536619	43	2.8	42	74	5	112	28	18	21	31	1.97
1536924--1537012	21	4.3	21	80	4	92	1	39	16	42	1.56
1538479--1538512	17	2.1	15	89	10	50	67	5	5	20	1.33
1544427--1544481	22	2.5	22	93	0	92	43	23	3	29	1.71
1544478--1544523	21	2.1	22	92	4	76	41	15	10	32	1.82
1545170--1545299	42	3.1	42	67	20	94	32	12	13	42	1.81
1546579--1546729	41	3.7	41	81	2	180	33	18	13	33	1.90
1546708--1546742	13	2.7	13	95	0	61	31	17	5	45	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1549152--1549371	55	4.0	55	80	2	246	34	12	19	34	1.89
1549583--1549905	68	4.8	68	90	0	511	30	14	24	29	1.95
1549855--1550196	81	4.2	81	93	1	544	32	13	25	28	1.94
1549857--1550237	162	2.4	161	87	2	417	34	12	23	28	1.92
1554050--1554122	29	2.5	30	93	2	121	19	35	12	32	1.89
1558748--1558789	19	2.2	20	87	12	61	64	11	2	21	1.38
1567208--1567283	28	2.8	26	71	13	64	23	7	26	42	1.81
1568565--1568708	73	2.0	73	91	2	236	28	4	10	56	1.51
1568810--1568841	13	2.5	13	100	0	64	6	15	0	78	0.95
1569429--1569479	19	2.7	18	79	11	57	19	3	0	76	0.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21