genome.fa.s7832.2.7.7.80.10.50.1000.18.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007832.1 Hibiscus syriacus cultivar Beakdansim tig00110174_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4020056

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   

This is table  18  of  21  ( 2482 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3383353--3383396	21	2.1	21	91	0	70	29	0	15	54	1.42
3383366--3383431	28	2.4	28	82	10	98	31	0	12	56	1.36
3383938--3383971	10	3.4	10	100	0	68	47	0	0	52	1.00
3384252--3384327	15	5.3	15	73	13	70	48	6	1	43	1.37
3387282--3387329	25	1.9	25	87	8	71	39	2	12	45	1.54
3387290--3387562	49	5.6	49	87	5	374	42	0	10	45	1.42
3387686--3387803	26	4.5	26	80	10	141	43	3	8	44	1.51
3387826--3388090	26	10.6	26	79	10	277	44	2	8	43	1.48
3387683--3388090	49	8.4	48	69	21	196	43	2	8	44	1.49
3388185--3388305	59	2.1	56	84	4	152	40	4	9	46	1.55
3388197--3388318	59	2.1	59	82	3	147	43	4	8	44	1.53
3390716--3390803	46	1.9	46	86	9	126	51	12	1	35	1.47
3393444--3393489	23	2.0	24	86	4	67	47	0	0	52	1.00
3394913--3394954	22	1.9	22	85	9	59	57	0	0	42	0.99
3394993--3395038	12	3.5	13	77	19	51	41	2	0	56	1.11
3395122--3395180	25	2.3	26	81	18	70	57	0	0	42	0.98
3404424--3404464	10	4.1	10	87	0	55	26	31	0	41	1.56
3404484--3404544	20	3.0	20	78	19	56	31	1	1	65	1.12
3406732--3406791	25	2.3	26	80	11	70	20	3	10	66	1.35
3406843--3406913	34	2.1	34	87	10	101	19	2	14	63	1.42
3416955--3417022	23	3.0	24	77	18	72	57	0	1	41	1.08
3430659--3430701	19	2.2	20	84	12	63	72	2	4	20	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3430763--3430823	16	3.6	16	77	16	52	72	0	6	21	1.07
3430899--3430953	26	2.1	26	83	6	67	70	1	1	25	1.06
3431081--3431128	25	1.9	25	86	0	69	60	0	2	37	1.09
3431079--3431146	36	1.9	35	88	8	102	60	0	4	35	1.17
3431168--3431205	10	4.1	9	86	13	51	65	0	0	34	0.93
3431168--3431205	18	2.1	18	85	14	51	65	0	0	34	0.93
3431624--3431728	37	2.8	37	85	0	147	29	14	15	40	1.86
3432476--3433431	106	9.0	106	90	0	1450	22	17	25	34	1.96
3432476--3433431	423	2.3	424	90	1	1517	22	17	25	34	1.96
3434256--3434332	22	3.5	22	90	0	127	20	14	28	36	1.92
3434950--3435008	16	3.7	15	78	17	57	1	10	5	83	0.88
3434950--3435002	16	3.2	16	80	12	63	0	11	5	83	0.81
3434959--3435010	8	6.4	8	80	12	61	1	9	3	84	0.82
3439526--3439568	19	2.2	20	84	12	63	72	2	4	20	1.14
3439630--3439677	20	2.6	18	83	6	60	75	0	8	16	1.04
3439760--3439813	20	2.6	19	85	11	63	70	1	1	25	1.07
3439765--3439813	18	2.6	18	83	6	53	69	2	2	26	1.10
3439760--3439812	21	2.5	21	84	9	63	71	1	1	24	1.06
3440098--3440144	2	23.5	2	95	0	85	48	0	0	51	1.00
3440546--3440635	37	2.4	37	84	0	108	34	7	13	44	1.72
3442268--3442337	24	2.8	24	79	18	63	20	5	4	70	1.26
3445360--3445384	6	4.2	6	100	0	50	84	16	0	0	0.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3447143--3447267	36	3.4	37	79	8	130	28	23	14	33	1.94
3447356--3447442	21	4.4	21	73	18	96	25	21	11	41	1.87
3447280--3447382	37	2.8	36	83	2	143	21	19	14	44	1.86
3447285--3447461	94	1.9	94	90	0	282	24	20	14	40	1.89
3447384--3447461	37	2.1	36	92	2	129	28	19	14	38	1.90
3447514--3447634	33	3.6	33	83	7	154	40	18	9	31	1.83
3447627--3447956	85	3.9	84	83	3	378	34	23	19	22	1.96
3449257--3449322	24	2.6	25	81	15	73	19	6	4	69	1.27
3449328--3449389	24	2.4	25	86	10	90	17	12	3	66	1.38
3449338--3449384	24	2.0	24	100	0	94	21	12	2	63	1.39
3451262--3451711	151	3.0	151	92	1	731	45	14	18	21	1.85
3451728--3451795	34	2.0	34	83	13	86	47	19	11	22	1.81
3453401--3453496	35	2.7	35	83	0	129	39	30	3	27	1.72
3453658--3453946	142	2.0	144	89	5	440	37	5	9	47	1.61
3454004--3454055	24	2.2	24	96	0	95	40	17	21	21	1.91
3457129--3457167	20	2.0	20	84	0	51	30	17	17	33	1.94
3465798--3465833	10	3.6	10	96	0	63	13	8	16	61	1.56
3466032--3466096	34	1.9	34	90	0	103	12	15	18	53	1.72
3466000--3466113	24	4.8	24	70	10	81	13	13	16	57	1.66
3468424--3468473	22	2.4	21	78	18	59	46	0	0	54	1.00
3472633--3472817	92	2.0	93	86	1	255	44	14	18	22	1.86
3487089--3487121	2	16.0	2	93	6	57	48	0	3	48	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3487210--3487279	29	2.4	28	73	15	70	54	2	11	31	1.51
3489388--3489445	20	2.7	20	84	10	71	31	18	22	27	1.97
3490417--3490497	2	40.5	2	100	0	162	49	0	0	50	1.00
3496030--3496192	65	2.5	64	84	3	220	26	15	26	30	1.96
3496140--3496190	19	2.7	19	85	8	70	25	15	35	23	1.94
3497174--3497217	21	2.1	21	91	0	70	40	13	36	9	1.76
3498017--3498080	21	3.0	21	77	4	67	29	6	42	21	1.78
3502652--3502691	21	1.9	21	85	10	55	35	10	2	52	1.48
3504745--3504795	19	2.7	19	85	8	70	25	15	35	23	1.94
3504620--3504797	64	2.8	65	83	2	216	26	16	26	29	1.97
3504647--3504846	65	3.1	65	80	13	200	27	17	26	30	1.97
3511627--3511657	2	15.0	2	93	6	53	48	3	0	48	1.17
3512002--3512070	23	3.0	23	70	8	68	17	20	26	36	1.94
3512868--3512959	27	3.4	27	92	4	159	14	7	35	42	1.74
3521731--3521802	37	1.9	37	88	0	108	12	13	13	59	1.61
3526015--3526109	48	2.0	47	93	2	163	33	17	25	23	1.96
3528473--3528539	30	2.2	30	86	0	89	31	28	20	19	1.97
3528532--3528655	31	4.0	31	78	10	128	30	20	18	29	1.97
3532987--3533038	21	2.5	21	81	3	61	38	19	25	17	1.93
3533027--3533161	20	6.7	20	79	7	112	33	23	17	25	1.96
3533024--3533155	61	2.2	61	85	0	174	35	23	16	24	1.95
3533329--3533372	22	2.0	22	90	0	70	20	43	15	20	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3533635--3533693	20	3.0	20	87	0	73	16	18	22	42	1.89
3535011--3535055	18	2.5	18	88	0	72	26	44	15	13	1.83
3535536--3535581	20	2.3	20	84	0	56	36	23	21	17	1.94
3535547--3535602	20	2.8	20	81	2	69	39	21	23	16	1.92
3535575--3535671	19	5.6	19	69	22	88	45	18	20	15	1.85
3535575--3535668	33	2.8	33	95	0	161	45	18	20	15	1.85
3535683--3535772	14	5.8	14	71	21	72	12	17	22	47	1.80
3535678--3535789	33	3.4	33	93	1	190	12	18	22	46	1.82
3535774--3535829	20	2.8	19	86	7	76	16	25	23	35	1.94
3537692--3537730	14	2.8	14	84	0	51	35	0	17	46	1.49
3537867--3537934	19	3.8	19	85	14	101	47	17	22	13	1.82
3537961--3538050	20	4.5	20	80	5	119	16	21	24	37	1.93
3538572--3538605	12	2.9	12	86	4	52	17	41	5	35	1.74
3539160--3539213	24	2.2	24	86	0	72	24	16	20	38	1.92
3539388--3539424	12	3.1	12	100	0	74	72	0	27	0	0.84
3541618--3541761	19	8.4	19	68	21	111	41	19	22	16	1.90
3541638--3541770	33	4.0	33	86	7	198	39	21	21	18	1.93
3541926--3541962	14	2.6	14	91	0	65	45	24	0	29	1.53
3543659--3543843	91	2.0	90	90	6	291	47	18	12	22	1.82
3545384--3545439	14	3.6	14	74	21	58	41	25	23	10	1.86
3545360--3545458	33	3.0	33	92	1	153	42	22	23	12	1.87
3545397--3545508	52	2.2	52	93	0	188	46	22	20	10	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3545438--3545508	33	2.2	33	89	5	108	47	21	21	9	1.79
3545335--3545513	19	10.1	19	70	19	118	44	20	22	12	1.84
3545509--3545553	19	2.4	19	88	0	63	8	13	26	51	1.70
3546109--3546180	20	3.5	20	83	5	74	20	20	22	36	1.96
3546170--3546242	21	3.5	21	79	3	76	36	17	21	23	1.94
3546296--3546345	21	2.4	22	80	6	68	36	18	26	20	1.95
3548551--3548666	21	5.6	21	69	10	60	32	27	18	21	1.96
3548654--3548825	20	8.6	20	90	2	256	33	28	19	18	1.96
3549206--3549276	33	2.2	33	94	0	124	11	23	16	47	1.79
3549356--3549462	21	5.6	20	73	17	102	45	18	22	13	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21