genome.fa.s7832.2.7.7.80.10.50.1000.21.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007832.1 Hibiscus syriacus cultivar Beakdansim tig00110174_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4020056

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   

This is table  21  of  21  ( 2482 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3896209--3896247	18	2.2	18	100	0	78	61	0	0	38	0.96
3896368--3896470	45	2.3	45	94	0	179	35	20	20	23	1.96
3896404--3896698	76	3.9	76	97	0	540	34	21	22	21	1.97
3896554--3896819	121	2.2	121	93	2	453	34	21	22	22	1.97
3896630--3896743	45	2.5	45	94	2	192	33	21	22	21	1.97
3896478--3896895	197	2.1	197	96	1	766	34	21	22	22	1.97
3896677--3896968	76	3.9	76	94	3	493	34	20	22	21	1.96
3896373--3896993	273	2.3	273	98	0	1190	34	21	22	21	1.97
3896903--3896993	45	2.0	47	91	4	150	31	21	24	21	1.98
3900214--3900426	114	1.9	114	92	2	356	32	18	15	33	1.92
3907773--3907807	15	2.3	15	90	0	61	57	0	0	42	0.99
3907782--3907834	28	1.9	27	85	11	72	54	0	1	43	1.11
3907810--3908016	113	1.8	113	79	6	240	42	8	9	38	1.69
3909504--3909563	3	20.0	3	77	13	61	60	1	0	38	1.07
3909493--3909563	21	3.1	22	92	8	108	57	1	0	40	1.07
3909531--3909569	18	2.2	18	100	0	78	61	0	0	38	0.96
3922972--3923002	3	10.3	3	100	0	62	32	0	0	67	0.91
3923518--3923585	32	2.1	32	97	0	127	33	32	30	2	1.73
3924476--3924520	21	2.2	20	88	11	65	31	4	0	64	1.13
3924767--3924800	2	17.0	2	100	0	68	50	0	0	50	1.00
3924940--3924967	2	14.0	2	100	0	56	50	0	0	50	1.00
3925216--3925288	27	2.7	28	85	10	107	35	9	6	47	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3928324--3928619	134	2.2	129	82	8	339	35	26	14	23	1.93
3929844--3929888	21	2.2	20	88	11	65	31	4	0	64	1.13
3930267--3930296	2	15.0	2	100	0	60	50	0	0	50	1.00
3930008--3930298	133	2.2	131	84	7	356	44	6	5	43	1.53
3930859--3930888	2	15.0	2	100	0	60	0	50	0	50	1.00
3936416--3936476	21	3.2	21	65	26	62	47	16	4	31	1.68
3936398--3936477	36	2.2	36	93	2	135	45	18	5	31	1.71
3939752--3939783	15	2.1	15	100	0	64	6	25	18	50	1.70
3941983--3942035	26	2.0	26	92	0	88	20	41	13	24	1.88
3947656--3947698	2	21.5	2	100	0	86	48	0	0	51	1.00
3950629--3950758	65	2.0	65	86	4	181	27	8	15	48	1.74
3953968--3954008	14	2.9	14	85	7	55	12	17	14	56	1.68
3953962--3954017	15	3.7	15	83	7	60	10	19	12	57	1.64
3955730--3955772	18	2.4	18	92	7	70	4	4	39	51	1.44
3956060--3956178	53	2.3	52	84	7	152	41	25	2	31	1.69
3956177--3956477	51	5.8	51	90	5	433	52	20	4	22	1.65
3965402--3965444	21	2.0	22	86	4	61	30	2	6	60	1.35
3968896--3968959	24	2.7	24	82	0	74	23	14	17	45	1.84
3970068--3970148	30	2.7	30	92	1	126	41	9	25	22	1.84
3972924--3972972	25	2.0	25	83	0	62	51	8	24	16	1.71
3987001--3987040	19	2.1	19	95	0	71	42	7	45	5	1.54
3988681--3988745	34	1.9	34	93	0	112	49	18	13	18	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3992125--3992222	21	4.7	21	75	15	87	38	21	18	21	1.93
3992125--3992241	20	5.7	20	73	14	78	39	23	17	19	1.92
3992189--3992381	20	9.6	20	81	3	210	35	24	20	19	1.96
3992762--3992832	33	2.2	33	89	0	106	11	23	16	47	1.79
3992905--3993021	41	3.1	38	79	14	136	45	17	25	11	1.82
3992912--3992987	21	3.7	21	85	3	109	44	18	25	11	1.83
3992972--3993028	14	3.7	14	75	20	60	43	22	24	8	1.81
3992964--3993044	33	2.5	33	93	0	135	45	23	22	8	1.79
3993040--3993137	19	5.7	19	68	22	72	10	24	23	41	1.85
3993062--3993151	14	5.7	14	74	23	81	8	25	24	41	1.84
3993045--3993159	33	3.5	33	95	0	203	9	24	21	44	1.82
3994850--3995314	185	2.6	182	96	2	839	22	12	18	45	1.83
3994850--3995314	92	5.1	92	96	3	836	22	12	18	45	1.83
3995358--3995486	19	7.3	19	75	17	125	45	28	17	8	1.77
3995394--3995486	33	2.8	32	91	4	150	46	27	18	7	1.76
3995358--3995486	52	2.5	52	74	14	140	45	28	17	8	1.77
3995482--3995616	19	7.6	19	75	16	128	11	19	23	45	1.82
3995504--3995560	14	3.7	14	77	20	60	10	21	22	45	1.82
3995487--3995579	33	2.8	33	95	0	168	10	20	21	47	1.80
3997525--3997560	14	2.6	14	95	0	63	33	0	22	44	1.53
3997665--3997762	19	5.5	19	82	15	129	43	17	23	15	1.87
3997665--3997779	52	2.2	51	92	4	187	42	17	25	14	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3997769--3997884	52	2.3	51	93	1	196	16	21	18	43	1.87
3997825--3997916	33	2.8	33	98	1	175	13	23	18	44	1.85
3997844--3997898	14	3.6	14	73	21	56	10	23	20	45	1.82
3997975--3998072	19	5.4	19	84	13	143	45	17	22	14	1.84
3997975--3998091	53	2.2	53	98	1	227	44	17	23	13	1.85
4000577--4000623	24	2.0	24	87	8	69	38	21	14	25	1.92
4001296--4001545	20	12.5	20	83	3	252	19	18	24	37	1.94
4001532--4001614	21	4.0	21	73	6	78	25	16	24	33	1.96
4001512--4001610	42	2.4	43	77	11	100	21	18	23	37	1.94
4004663--4004718	27	2.0	29	89	6	89	60	16	3	19	1.49
4006188--4006277	32	2.8	32	81	5	94	32	14	43	10	1.78
4006391--4006467	39	2.0	39	82	10	95	45	0	0	54	0.99
4006545--4006575	12	2.6	12	94	0	53	9	61	6	22	1.50
4014729--4014801	27	2.7	27	91	0	119	35	23	16	24	1.95
4015035--4015181	78	1.9	74	82	9	181	42	8	16	33	1.78
4015750--4015829	31	2.6	31	84	5	110	52	6	2	38	1.40

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21

The End!