genome.fa.s7832.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007832.1 Hibiscus syriacus cultivar Beakdansim tig00110174_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4020056

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   

This is table  5  of  21  ( 2482 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
942774--942923	40	3.5	40	67	22	115	25	19	19	36	1.95
942746--942925	90	2.0	90	100	0	360	26	17	21	34	1.95
952112--952137	3	8.7	3	100	0	52	0	34	0	65	0.93
952138--952163	3	8.7	3	100	0	52	65	0	0	34	0.93
957730--957774	15	2.9	15	83	3	54	48	8	2	40	1.47
958512--958675	73	2.2	73	94	0	283	31	13	6	48	1.68
958563--958682	36	3.3	36	65	11	91	29	15	5	50	1.64
958726--958815	45	2.0	45	100	0	180	28	15	6	48	1.70
958843--958947	32	3.2	32	70	12	88	16	12	25	45	1.82
959571--959638	36	1.9	35	84	3	91	39	7	10	42	1.67
960636--960705	31	2.3	31	90	5	106	45	18	20	15	1.85
964610--964655	24	1.9	24	81	0	56	43	21	15	19	1.87
964624--964738	12	9.6	12	66	18	53	34	22	20	21	1.97
964620--964667	24	2.0	24	88	8	71	39	20	18	20	1.92
964660--964743	24	3.5	24	96	0	150	32	22	22	22	1.98
968772--968857	12	7.2	12	65	19	54	33	20	20	24	1.97
968773--968880	24	4.5	24	89	0	153	32	22	21	24	1.98
970018--970053	18	2.0	18	88	0	54	30	16	0	52	1.44
972355--972382	14	2.0	14	100	0	56	42	21	14	21	1.88
973087--973191	37	2.8	37	85	0	138	43	15	11	29	1.81
973904--973930	13	2.1	13	100	0	54	29	0	7	62	1.22
973946--974078	39	3.6	38	75	17	102	28	6	1	63	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
974045--974075	4	7.8	4	100	0	62	22	0	0	77	0.77
974065--974105	15	2.6	16	81	14	50	14	7	0	78	0.96
978538--978603	30	2.2	28	81	7	69	75	6	12	6	1.16
979237--979292	22	2.5	22	97	0	103	35	25	12	26	1.91
979483--979545	24	2.6	24	84	2	90	36	19	3	41	1.67
979885--980452	106	5.4	106	91	0	839	34	23	18	23	1.96
981124--981220	37	2.6	37	81	0	122	41	16	12	29	1.85
981824--981855	2	16.0	2	100	0	64	50	0	0	50	1.00
982104--982138	4	8.8	4	100	0	70	22	0	0	77	0.78
982128--982168	15	2.6	16	81	14	50	14	7	0	78	0.96
982103--982179	12	6.2	12	76	11	66	16	6	0	76	0.98
983850--983922	30	2.5	30	86	2	103	36	10	8	43	1.70
984292--984600	94	3.4	91	80	12	354	37	15	9	37	1.79
984433--984606	81	2.2	80	86	5	244	37	16	6	39	1.75
984587--984910	159	2.1	155	88	2	477	40	15	7	36	1.76
984838--985010	81	2.1	81	92	0	283	36	13	9	39	1.78
987170--987218	16	3.1	15	88	8	71	38	22	18	20	1.93
988198--988235	16	2.4	16	100	0	76	34	18	5	42	1.73
988252--988299	7	6.9	7	83	9	53	20	0	2	77	0.88
988255--988300	13	3.5	13	81	3	56	21	0	2	76	0.90
988256--988300	6	6.7	7	85	14	51	22	0	2	75	0.91
988578--988602	4	6.2	4	100	0	50	24	0	0	76	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
990151--990219	36	1.9	36	85	5	95	42	21	13	23	1.88
990888--990947	27	2.3	26	82	2	75	23	11	6	58	1.57
992873--992913	20	2.2	19	86	8	57	80	0	19	0	0.71
994482--994558	20	4.0	20	83	11	106	23	33	29	12	1.92
994472--994557	18	4.6	18	81	11	84	23	32	29	15	1.95
995923--995970	19	2.5	20	86	3	71	54	6	10	29	1.59
997421--997488	20	3.3	20	87	4	100	22	32	33	11	1.90
997418--997535	40	3.1	40	82	15	135	21	32	28	17	1.96
997421--997500	20	3.9	20	85	6	99	21	33	30	15	1.94
997439--997533	20	5.2	18	78	13	88	21	31	29	17	1.96
997717--997756	20	1.9	21	85	10	55	37	37	10	15	1.80
1001734--1001793	22	2.7	22	94	0	111	31	13	13	41	1.83
1002307--1002631	166	2.0	166	91	2	537	35	13	12	38	1.83
1002640--1002967	152	2.2	152	88	0	485	25	19	20	34	1.96
1002634--1002928	76	3.9	76	93	0	491	24	19	21	34	1.96
1003398--1003666	123	2.2	123	84	5	350	40	14	18	26	1.89
1015776--1015806	2	15.5	2	100	0	62	48	0	0	51	1.00
1020061--1020117	21	2.7	21	86	5	62	40	22	17	19	1.91
1022022--1022052	8	3.9	8	95	0	53	51	25	0	22	1.48
1024474--1024509	18	2.0	18	94	0	63	25	22	8	44	1.80
1027956--1028179	117	1.9	117	83	3	290	28	15	8	48	1.73
1036011--1036067	2	31.0	2	80	16	61	43	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1041434--1041480	22	2.1	22	88	7	69	46	0	12	40	1.42
1043100--1043183	33	2.5	34	96	1	152	40	0	0	59	0.97
1053750--1053794	24	1.9	24	90	4	74	35	0	6	57	1.25
1055201--1055282	27	3.2	27	60	19	66	36	17	6	40	1.74
1055182--1055290	50	2.5	40	74	25	128	38	17	6	37	1.75
1063127--1063162	19	1.9	19	94	5	65	69	5	11	13	1.34
1063756--1063801	24	1.9	24	86	8	67	71	6	6	15	1.27
1065290--1065329	20	2.0	20	85	0	53	25	27	0	47	1.52
1065354--1065398	23	2.0	22	83	12	56	31	0	4	64	1.13
1065368--1065406	18	2.2	18	95	4	71	33	0	2	64	1.08
1065818--1065899	36	2.3	36	95	0	146	15	15	37	30	1.90
1067492--1067522	15	2.1	15	93	0	53	32	16	35	16	1.91
1067756--1067840	35	2.5	33	78	14	91	27	8	10	54	1.63
1072525--1072576	17	3.2	17	67	10	54	57	0	0	42	0.98
1072606--1072640	12	2.9	12	95	0	61	28	51	11	8	1.67
1079559--1079732	54	3.2	54	91	0	267	31	16	17	35	1.92
1081534--1081604	20	3.6	20	92	1	117	57	5	9	26	1.53
1085234--1085399	29	5.7	29	75	4	129	37	18	22	21	1.94
1088140--1088223	19	3.9	19	69	28	53	41	0	29	28	1.56
1088169--1088211	19	2.4	18	88	7	61	44	0	30	25	1.55
1088179--1088223	19	2.3	19	92	3	72	42	0	33	24	1.55
1088191--1088234	19	2.2	20	84	4	54	45	0	25	29	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1088454--1088515	7	8.9	7	76	0	61	41	32	0	25	1.56
1088454--1088515	21	3.0	21	78	0	70	41	32	0	25	1.56
1088510--1088566	20	3.0	19	80	7	62	47	8	5	38	1.57
1088537--1088578	16	2.6	16	88	7	59	47	7	2	42	1.43
1088542--1088583	16	2.9	14	83	16	59	47	11	0	40	1.40
1088845--1088920	33	2.3	33	90	0	125	32	31	14	21	1.93
1092191--1092329	41	3.4	40	74	10	129	25	18	23	33	1.97
1098722--1098751	15	2.0	15	93	0	51	36	20	23	20	1.95
1100889--1100934	21	2.2	21	100	0	92	36	4	30	28	1.76
1107903--1108114	20	10.5	20	71	10	110	33	22	13	30	1.93
1107917--1108114	40	4.9	40	76	6	139	32	22	13	31	1.93
1108250--1108291	22	1.9	22	85	0	57	16	42	16	23	1.88
1108633--1108705	34	2.1	34	94	0	128	46	20	15	17	1.84
1108646--1108705	20	3.3	20	67	26	60	46	20	16	16	1.84
1108733--1108807	34	2.2	34	85	0	105	21	13	21	44	1.86
1110214--1110313	42	2.4	42	93	0	164	25	35	13	27	1.92
1110214--1110330	42	2.8	42	88	2	137	26	35	13	24	1.93
1110484--1110544	21	2.9	21	87	2	86	18	11	32	37	1.86
1110510--1110553	21	2.1	21	82	0	52	18	11	34	36	1.86
1110562--1110657	42	2.3	43	77	12	117	27	11	29	32	1.91
1110562--1110668	42	2.5	40	77	8	106	25	12	28	33	1.92
1110778--1110819	4	10.5	4	84	0	57	26	2	2	69	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1110953--1111008	21	2.7	21	88	5	78	23	33	10	32	1.89
1110969--1111059	21	4.4	21	85	2	85	19	35	17	27	1.95
1111001--1111055	20	2.7	20	94	5	92	18	41	16	23	1.89
1113079--1113103	12	2.1	12	100	0	50	24	8	32	36	1.84
1113130--1113199	20	3.5	20	84	3	79	21	11	21	45	1.83
1113462--1113503	11	3.8	11	93	0	75	64	21	0	14	1.29
1113461--1113503	22	2.0	22	100	0	86	62	23	0	13	1.31
1115959--1116012	24	2.2	24	93	0	90	44	20	14	20	1.86
1116752--1116782	16	1.9	16	93	0	53	67	0	3	29	1.06
1116751--1116785	16	2.3	15	85	9	52	71	0	2	25	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21