genome.fa.s8283.2.7.7.80.10.50.1000.13.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008283.1 Hibiscus syriacus cultivar Beakdansim tig00110945_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2862730

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  13  of  14  ( 1608 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2522995--2523021	7	3.9	7	100	0	54	44	0	55	0	0.99
2524020--2524065	16	2.8	16	96	3	83	56	10	13	19	1.66
2524224--2524276	21	2.5	21	87	0	79	28	26	22	22	1.99
2524472--2524526	13	4.2	13	75	13	58	49	12	3	34	1.59
2524512--2524610	33	3.0	33	94	1	164	45	15	7	32	1.73
2524605--2524644	21	1.9	21	94	0	71	47	7	15	30	1.72
2526948--2526990	12	3.3	12	79	17	50	13	18	18	48	1.80
2530307--2530364	3	19.0	3	82	3	71	37	0	0	62	0.96
2539740--2539934	69	2.8	69	77	3	223	31	20	10	38	1.86
2544777--2544818	18	2.3	18	88	11	68	35	0	0	64	0.94
2546748--2546790	20	2.0	22	86	8	63	51	0	6	41	1.29
2557197--2557391	69	2.8	69	79	4	198	30	17	11	40	1.85
2562613--2562652	18	2.2	18	95	0	71	32	20	25	22	1.98
2563221--2563261	20	2.0	22	85	9	59	58	2	0	39	1.11
2563383--2563410	2	14.0	2	100	0	56	50	0	0	50	1.00
2582629--2582752	60	2.1	60	81	6	153	33	12	11	42	1.78
2586167--2586228	24	2.5	26	87	10	85	62	0	1	35	1.05
2586791--2586834	22	2.0	22	82	8	54	27	0	2	70	0.99
2590880--2591028	61	2.4	60	84	2	172	27	29	16	26	1.97
2591170--2591213	22	2.0	22	90	0	70	45	9	2	43	1.48
2595126--2595166	21	2.0	21	90	0	64	31	24	14	29	1.95
2607741--2607906	59	2.8	60	80	3	156	32	23	5	38	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2615265--2615312	20	2.3	20	80	13	53	33	25	16	25	1.96
2616604--2616653	20	2.5	21	83	9	68	46	10	14	30	1.77
2617143--2617519	188	2.0	188	97	2	713	31	11	10	46	1.74
2619188--2619244	21	2.8	21	86	2	80	33	24	19	22	1.97
2621063--2621101	18	2.2	17	86	4	51	20	0	20	58	1.39
2624373--2624406	16	2.1	17	88	5	52	23	29	23	23	1.99
2624526--2624570	21	2.1	22	87	4	65	48	8	8	33	1.65
2625079--2625175	46	2.0	48	84	5	126	38	12	11	38	1.79
2628970--2629176	73	2.8	73	100	0	414	37	5	14	42	1.69
2632922--2632949	2	14.0	2	100	0	56	50	0	0	50	1.00
2633313--2633363	24	2.1	24	88	0	75	47	0	52	0	1.00
2633314--2633369	9	6.2	9	73	8	51	50	0	50	0	1.00
2643739--2643806	15	4.5	15	76	10	68	73	7	1	17	1.13
2643739--2643806	30	2.3	30	85	10	86	73	7	1	17	1.13
2647902--2647953	20	2.5	21	87	6	79	23	15	21	40	1.91
2650963--2651004	21	2.0	21	90	0	66	28	28	21	21	1.99
2651117--2651201	34	2.5	34	90	1	134	18	23	35	22	1.96
2651960--2652025	23	2.9	23	86	0	87	31	24	25	18	1.97
2653831--2653870	14	2.9	14	96	0	71	27	15	7	50	1.70
2654181--2654212	14	2.3	14	100	0	64	50	0	18	31	1.48
2659593--2659625	16	2.0	17	94	5	59	57	24	6	12	1.57
2660277--2660484	70	3.1	66	79	10	206	47	10	12	30	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2660542--2660733	73	2.6	73	78	7	201	38	12	4	45	1.61
2661226--2661321	40	2.3	42	89	3	151	21	18	22	36	1.95
2661246--2661314	21	3.4	20	70	16	61	20	17	23	39	1.92
2661856--2661886	6	5.2	6	92	0	53	3	16	45	35	1.63
2661979--2662279	42	7.3	42	95	0	520	36	23	18	20	1.95
2662002--2662285	21	13.7	21	66	14	151	36	24	19	20	1.95
2662294--2662346	21	2.5	21	93	0	88	20	22	28	28	1.99
2662705--2663047	157	2.2	150	81	7	406	49	5	17	27	1.68
2662765--2663113	157	2.2	158	83	5	440	48	4	19	26	1.68
2665240--2665326	36	2.4	36	88	5	124	28	24	21	25	1.99
2670072--2670133	31	2.0	31	87	0	88	32	22	14	30	1.94
2671318--2671358	20	2.1	19	90	4	64	21	39	12	26	1.89
2683284--2683317	17	2.0	17	100	0	68	47	11	23	17	1.81
2684446--2684550	36	3.1	33	72	11	88	70	4	8	16	1.29
2685851--2685913	4	16.8	4	75	9	53	73	3	4	19	1.15
2685937--2686068	33	4.2	31	80	15	112	46	8	3	40	1.52
2685961--2686350	36	10.9	38	76	14	257	44	8	4	42	1.55
2686111--2686330	75	3.0	74	83	5	250	44	8	5	42	1.57
2686238--2686262	12	2.1	12	100	0	50	44	8	8	40	1.63
2686123--2686398	111	2.5	110	81	10	289	44	7	5	42	1.56
2687027--2688257	164	7.4	164	90	2	1762	24	20	25	29	1.99
2687027--2688212	333	3.6	332	93	1	1912	24	20	24	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2691609--2691648	19	2.1	19	90	0	62	70	7	12	10	1.35
2695539--2695589	22	2.3	22	82	3	66	27	21	13	37	1.91
2697173--2697246	32	2.3	32	86	2	96	32	29	22	14	1.94
2697388--2697444	12	4.8	12	82	0	69	56	15	15	12	1.68
2697391--2697444	24	2.2	24	90	0	81	57	14	14	12	1.66
2698942--2698986	13	3.4	13	84	3	63	40	20	24	15	1.91
2699020--2699080	14	4.4	14	81	8	70	24	21	29	24	1.99
2699020--2699080	29	2.2	28	82	5	70	24	21	29	24	1.99
2703661--2703716	20	2.7	21	80	8	69	75	0	7	17	1.03
2703813--2704137	37	8.6	38	76	13	287	42	7	5	44	1.55
2703807--2704137	75	4.4	72	81	12	330	42	7	5	45	1.54
2703953--2704091	28	5.1	28	75	16	148	43	6	3	46	1.46
2703995--2704026	2	16.5	2	93	6	57	46	0	0	53	1.00
2703807--2704130	79	4.3	76	83	8	321	42	7	4	44	1.53
2704552--2705054	202	2.5	199	81	6	548	29	19	19	30	1.97
2706897--2707100	101	2.0	103	85	2	277	32	17	14	35	1.90
2708496--2708540	23	2.0	23	90	0	72	24	26	26	22	2.00
2708508--2708822	149	2.1	149	97	1	596	33	21	18	26	1.96
2709591--2709625	18	1.9	18	88	11	54	22	17	5	54	1.64
2710210--2710254	21	2.1	21	87	0	63	15	24	28	31	1.96
2713323--2713367	23	2.0	23	90	0	72	24	26	26	22	2.00
2713335--2713649	149	2.1	149	96	1	578	33	21	18	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2714420--2714454	18	1.9	18	88	11	54	22	17	5	54	1.64
2718910--2718953	18	2.4	18	100	0	88	63	4	4	27	1.33
2719542--2719574	15	2.1	16	88	5	50	75	0	6	18	1.00
2720600--2720681	35	2.3	35	79	4	94	41	3	3	51	1.37
2720686--2720854	37	4.6	37	84	8	202	41	8	4	45	1.54
2720686--2720895	38	5.6	37	82	8	221	41	8	4	45	1.54
2720842--2720948	47	2.3	47	82	12	130	41	5	5	47	1.50
2721552--2721586	17	2.1	17	88	0	52	20	8	0	71	1.11
2723622--2723757	20	6.7	20	70	13	71	37	24	17	20	1.94
2723725--2723999	20	13.6	20	72	11	134	38	24	18	19	1.93
2723725--2724002	40	6.9	40	79	7	253	37	24	17	20	1.94
2723725--2723996	60	4.5	60	74	11	184	38	23	18	19	1.93
2724145--2724171	14	1.9	14	100	0	54	40	29	22	7	1.81
2724159--2724247	20	4.4	20	88	2	135	34	24	22	17	1.96
2724252--2724339	19	4.8	19	80	16	105	47	17	19	15	1.82
2724230--2724339	52	2.1	53	89	1	168	46	17	20	15	1.84
2724348--2724443	33	2.8	33	82	3	111	15	22	18	42	1.88
2724545--2724581	14	2.6	14	86	0	56	48	21	0	29	1.50
2725459--2725486	14	2.0	14	100	0	56	21	14	0	64	1.29
2725959--2726059	21	4.8	21	74	3	87	22	18	36	21	1.95
2725967--2726059	42	2.2	42	80	3	107	22	17	39	20	1.92
2726539--2726607	20	3.5	19	88	4	84	39	23	17	20	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2726650--2726758	19	5.7	19	75	7	69	12	18	22	46	1.82
2726811--2727185	94	4.0	94	93	1	617	47	17	12	22	1.81
2727984--2728026	21	2.0	22	82	13	54	48	2	4	44	1.36
2728885--2728940	20	2.8	20	80	0	76	42	19	21	16	1.89
2728925--2728960	14	2.6	14	86	0	54	44	22	22	11	1.84
2728952--2729016	19	3.7	19	72	19	68	44	21	21	12	1.85
2728938--2729011	33	2.2	33	95	0	130	45	20	21	12	1.83
2729039--2729130	40	2.3	40	85	7	116	11	18	19	50	1.78
2729043--2729133	20	4.6	20	80	9	105	12	16	19	51	1.75
2729691--2729945	20	12.6	20	74	8	228	20	16	25	38	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14