genome.fa.s8283.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008283.1 Hibiscus syriacus cultivar Beakdansim tig00110945_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2862730

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  2  of  14  ( 1608 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
218019--218252	79	3.0	79	88	1	337	35	11	23	29	1.90
218225--218463	45	5.3	44	83	5	255	41	10	19	29	1.84
219113--219139	2	13.5	2	100	0	54	51	0	0	48	1.00
222957--223011	22	2.6	22	78	18	64	30	14	27	27	1.95
223507--223645	45	3.3	44	64	28	113	35	11	21	30	1.89
223497--223698	79	2.5	81	90	2	327	37	11	22	28	1.90
223662--223917	45	5.7	45	84	0	298	37	10	23	29	1.87
223699--223951	90	2.8	88	77	5	247	39	8	21	30	1.84
224388--224540	81	1.9	81	83	2	200	39	9	23	28	1.85
224594--224624	2	15.5	2	100	0	62	51	0	0	48	1.00
232238--232269	13	2.6	13	85	14	50	25	15	15	43	1.86
237023--237404	37	10.1	37	72	13	276	36	23	18	21	1.95
236982--237226	115	2.1	116	87	3	354	33	23	20	22	1.97
237060--237342	78	3.7	78	75	10	276	34	24	18	22	1.96
237024--237404	153	2.5	151	89	1	573	36	23	18	21	1.95
239541--239574	17	2.0	18	88	11	54	11	23	11	52	1.70
241523--241592	8	8.9	8	81	7	81	1	14	1	82	0.80
241529--241594	23	2.8	24	82	17	86	1	15	0	83	0.72
241529--241597	14	4.6	15	84	10	88	1	15	0	82	0.74
247804--247830	13	2.1	13	100	0	54	48	7	14	29	1.71
252507--252532	13	2.0	13	100	0	52	38	0	23	38	1.55
253275--253319	21	2.1	22	91	4	74	73	0	4	22	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
253339--253402	8	7.5	8	76	11	56	78	0	4	17	0.92
253351--253407	5	10.8	5	76	14	53	77	0	3	19	0.92
253279--253407	45	2.9	43	78	14	118	72	2	5	19	1.15
253344--253402	16	3.5	17	83	6	75	77	0	3	18	0.90
253413--253457	18	2.5	18	89	7	65	64	0	13	22	1.28
254655--255047	37	10.4	36	76	16	198	47	7	2	43	1.42
254757--254783	2	13.5	2	100	0	54	48	0	0	51	1.00
254765--255047	37	7.4	38	82	11	332	47	7	1	43	1.41
256118--256162	22	2.0	22	95	0	81	22	24	22	31	1.99
262653--262698	19	2.4	20	79	17	53	78	2	0	19	0.86
262654--262775	8	14.2	8	70	15	50	73	1	4	20	1.08
262723--262772	12	4.1	12	79	5	55	78	0	4	18	0.91
262723--262777	17	3.2	16	82	10	65	78	0	3	18	0.90
262671--262790	36	3.4	34	74	17	100	72	0	5	21	1.09
263885--263928	24	1.9	22	86	9	61	77	4	2	15	1.04
263878--263939	32	1.9	32	87	6	90	75	4	3	16	1.10
264568--264598	16	1.9	16	93	0	53	41	6	16	35	1.74
274807--274911	31	3.4	31	69	12	99	42	11	12	33	1.78
274838--274932	30	3.1	30	70	14	95	38	11	12	36	1.80
274804--274932	61	2.1	61	95	0	231	41	11	13	34	1.80
278954--278991	19	2.0	20	89	5	60	55	2	0	42	1.14
283852--283896	23	2.0	23	95	0	81	20	24	26	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
284098--284130	13	2.5	14	85	14	52	33	0	6	60	1.21
290616--290672	23	2.5	23	91	0	87	19	29	24	26	1.98
293830--293873	15	2.9	15	89	0	70	11	63	15	9	1.51
298725--299429	213	3.2	214	91	6	1146	30	18	23	27	1.98
303827--303863	17	2.2	17	100	0	74	10	21	48	18	1.78
303891--303952	19	3.2	19	76	17	65	27	24	27	20	1.99
307290--307321	17	1.9	16	93	6	55	68	0	12	18	1.20
309452--309501	3	16.7	3	80	15	59	68	2	0	30	1.01
309799--309904	40	2.6	40	82	13	126	18	20	37	22	1.94
309923--310004	28	2.9	28	80	10	96	45	14	17	23	1.85
310168--310274	36	2.9	38	76	8	112	38	11	13	37	1.80
310139--310274	74	1.9	70	83	8	175	38	11	14	34	1.83
310437--310497	31	1.9	31	83	9	79	42	13	13	31	1.82
310808--310888	31	2.6	32	74	7	85	37	12	18	32	1.88
310908--311013	36	3.0	36	80	4	117	37	12	17	32	1.87
311018--311225	108	2.0	106	83	8	262	40	11	15	32	1.83
311140--311461	153	2.1	154	82	3	387	39	10	17	33	1.83
311919--311982	25	2.5	25	94	2	110	17	35	7	39	1.78
312981--313109	45	2.8	45	77	16	133	1	17	8	72	1.18
313002--313086	20	4.0	21	76	14	75	0	15	8	76	1.01
313018--313099	28	3.0	27	81	8	96	0	14	7	78	0.96
313029--313109	17	5.1	16	75	13	62	0	17	7	75	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
314384--314426	13	3.2	13	78	18	52	51	11	20	16	1.75
315674--315730	28	2.0	28	100	0	114	40	28	14	17	1.88
316262--316300	19	2.0	20	85	9	55	61	5	5	28	1.39
316873--316912	17	2.4	16	84	8	62	70	0	10	20	1.16
318133--318162	2	15.0	2	100	0	60	50	0	0	50	1.00
319082--319134	3	17.7	3	88	7	81	67	1	0	30	1.01
319555--319651	28	3.4	28	80	12	99	42	14	18	24	1.88
319771--319907	36	4.0	32	73	19	116	37	13	16	32	1.87
319771--319906	74	1.9	70	85	8	184	38	13	16	32	1.87
319999--320110	32	3.5	32	74	11	102	43	14	15	26	1.84
319999--320207	97	2.2	96	82	8	237	41	13	17	27	1.87
320055--320129	31	2.4	30	86	8	98	41	13	16	29	1.86
320272--320334	33	1.9	33	83	0	81	39	14	19	26	1.90
320440--320498	31	1.9	31	86	3	84	38	16	15	28	1.89
320536--320645	36	3.1	35	83	6	132	38	10	16	34	1.84
320649--320857	108	2.0	105	81	8	244	40	10	16	33	1.82
324975--325543	55	10.6	55	89	5	579	28	26	15	28	1.96
324975--325537	165	3.5	165	82	9	646	29	26	15	28	1.96
326962--327016	19	2.9	19	80	17	62	14	18	0	67	1.24
326970--327016	19	2.4	20	85	7	69	12	19	0	68	1.21
326981--327069	11	7.9	11	73	18	51	6	16	0	76	0.99
326957--327022	17	3.8	16	76	18	62	12	16	0	71	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
326982--327051	28	2.6	27	78	8	72	5	18	0	75	0.99
326981--327064	12	7.3	11	75	10	53	4	17	0	77	0.94
327026--327064	17	2.3	17	86	8	53	0	15	0	84	0.62
327032--327075	23	1.9	23	85	0	61	4	15	0	79	0.89
336717--336805	45	1.9	47	88	4	137	38	22	10	29	1.87
341245--341273	2	14.5	2	100	0	58	51	0	0	48	1.00
346402--346470	17	4.1	17	74	20	72	39	8	1	50	1.42
346443--346469	14	1.9	14	100	0	54	40	7	0	51	1.30
346423--346470	20	2.4	20	85	0	69	37	8	2	52	1.44
349213--349263	2	25.5	2	100	0	102	50	0	0	49	1.00
350391--350554	60	2.7	60	79	6	170	31	18	5	44	1.72
354097--354158	33	1.9	32	90	6	99	37	9	8	45	1.67
354272--354321	26	1.9	26	91	0	82	52	2	6	40	1.38
355789--355840	21	2.5	21	81	3	61	38	19	25	17	1.93
355826--355953	41	3.1	41	77	6	125	34	25	16	24	1.95
355829--355943	20	5.7	20	82	6	115	31	26	18	24	1.97
356131--356174	22	2.0	22	90	0	70	22	43	15	18	1.88
357816--357860	18	2.5	18	88	0	72	26	44	15	13	1.83
358343--358397	20	2.8	20	80	2	58	38	25	23	12	1.90
358397--358448	14	3.4	14	76	19	59	50	23	15	11	1.76
358381--358471	32	2.8	33	93	3	157	49	20	17	12	1.78
358488--358545	14	3.9	14	81	16	71	10	15	22	51	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
358483--358561	32	2.4	33	89	2	124	11	17	21	49	1.78
358546--358601	20	2.8	19	86	7	76	16	25	23	35	1.94
360472--360508	14	2.6	14	100	0	74	24	0	21	54	1.45
360618--360668	14	3.3	14	76	23	57	50	19	19	9	1.75
360692--360749	20	2.9	20	97	0	107	15	22	24	37	1.93
361806--361859	24	2.2	24	90	0	81	24	16	20	38	1.92
363369--363461	19	5.4	19	64	23	71	43	19	21	16	1.88
363368--363463	33	2.9	32	85	10	140	42	19	21	15	1.88
363478--363534	14	3.7	14	75	20	60	8	24	22	43	1.81
363472--363552	33	2.5	33	95	0	144	11	22	20	45	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14