genome.fa.s8283.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008283.1 Hibiscus syriacus cultivar Beakdansim tig00110945_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2862730

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  14  of  14  ( 1608 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2729693--2729945	41	6.2	41	89	0	357	20	16	24	38	1.92
2729691--2729945	61	4.2	61	77	10	245	20	16	25	38	1.92
2729954--2730026	20	3.7	20	92	3	103	13	21	20	43	1.86
2730020--2730072	21	2.5	21	73	11	54	24	18	24	32	1.97
2731004--2731082	29	2.8	28	75	19	83	24	6	3	65	1.32
2736865--2736921	29	1.9	29	85	3	78	19	0	33	47	1.50
2737983--2738025	22	2.0	22	85	0	59	34	0	4	60	1.17
2741353--2741381	6	4.8	6	100	0	58	17	34	31	17	1.93
2743860--2743919	27	2.2	27	93	0	102	31	11	21	35	1.90
2752410--2752497	23	3.9	23	79	18	87	23	18	26	31	1.97
2777589--2777628	20	2.0	21	90	5	64	32	20	20	27	1.97
2786137--2786294	81	2.0	81	94	0	280	15	30	22	31	1.95
2786410--2786710	54	5.5	54	78	9	295	25	25	21	26	2.00
2786413--2786623	113	1.9	113	90	4	336	26	25	23	25	2.00
2786413--2786710	113	2.7	110	83	4	323	25	25	21	26	2.00
2793008--2793266	130	2.0	131	91	0	421	41	17	13	27	1.87
2795541--2795572	2	16.0	2	100	0	64	50	0	0	50	1.00
2796784--2796994	44	4.9	42	73	9	140	45	8	19	26	1.79
2796889--2797182	157	1.9	156	84	6	398	46	8	18	26	1.77
2797113--2797269	41	3.8	39	75	16	122	52	6	16	24	1.67
2797297--2797352	29	2.0	28	83	13	71	42	8	26	21	1.82
2806847--2806904	30	1.9	30	82	10	73	41	12	15	31	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2806862--2806920	30	2.0	30	93	0	100	40	10	15	33	1.81
2807218--2807348	70	1.9	70	93	0	226	42	12	12	32	1.79
2811852--2811941	30	3.0	29	72	4	81	35	14	5	44	1.69
2813143--2813174	17	1.9	17	93	6	57	46	18	6	28	1.73
2815954--2816420	201	2.3	199	80	1	497	32	21	19	26	1.97
2815954--2817029	200	5.4	199	74	6	773	34	19	18	26	1.96
2819523--2819616	41	2.3	40	79	1	98	35	20	18	26	1.95
2820348--2820390	21	2.0	22	91	8	72	37	9	9	44	1.69
2824498--2824662	43	3.9	43	81	5	192	23	18	20	37	1.94
2824498--2824662	85	1.9	86	83	3	217	23	18	20	37	1.94
2829071--2829713	321	2.0	321	99	0	1277	28	17	21	32	1.96
2832624--2832675	22	2.3	23	90	3	79	38	15	25	21	1.92
2833137--2833287	45	3.3	45	85	2	196	32	23	5	37	1.79
2833366--2833489	57	2.2	56	84	2	158	25	25	18	30	1.98
2838857--2838908	22	2.3	23	93	3	88	36	15	26	21	1.93
2839367--2839520	45	3.4	45	85	2	202	31	23	6	38	1.80
2840587--2840651	30	2.2	30	83	5	78	35	16	3	44	1.64
2848042--2848097	3	18.7	3	96	0	103	33	1	0	64	1.04
2848590--2848620	16	1.9	16	93	0	53	77	6	16	0	0.97
2849520--2849550	16	1.9	16	93	0	53	58	0	3	38	1.15
2860892--2860939	1	48.0	1	78	0	51	89	0	10	0	0.48
2860895--2860939	10	4.5	10	89	10	74	88	0	11	0	0.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2860892--2860939	20	2.5	20	93	6	82	89	0	10	0	0.48
2860897--2860936	19	2.0	21	90	9	57	87	0	12	0	0.54
2860889--2860936	11	4.5	11	85	12	64	87	0	12	0	0.54
2862066--2862446	82	4.7	83	95	3	681	28	13	22	35	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14

The End!