genome.fa.s8283.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008283.1 Hibiscus syriacus cultivar Beakdansim tig00110945_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2862730

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  8  of  14  ( 1608 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1491006--1491042	19	1.9	19	94	0	65	16	2	0	81	0.81
1491652--1491686	18	1.9	18	88	11	54	11	5	14	68	1.37
1494693--1494737	20	2.2	20	84	7	56	48	2	0	48	1.13
1496082--1496170	33	2.8	32	84	5	117	37	16	20	25	1.93
1502714--1502775	23	2.7	23	83	9	74	24	25	22	27	2.00
1505491--1505540	21	2.4	21	100	0	100	18	32	30	20	1.96
1506680--1506725	24	2.0	23	82	4	56	45	2	0	52	1.13
1506671--1506744	21	3.6	19	77	15	76	55	1	0	43	1.08
1510738--1510775	19	2.0	19	85	10	51	36	0	42	21	1.53
1510801--1510884	23	3.8	22	77	12	82	21	26	29	22	1.99
1524550--1524588	16	2.4	16	80	20	53	82	10	2	5	0.93
1525137--1525192	25	2.3	25	96	3	105	51	0	14	33	1.42
1525786--1525831	24	1.9	24	86	0	65	34	6	8	50	1.59
1533061--1533102	20	2.1	20	90	0	66	35	21	9	33	1.86
1538450--1538492	20	2.2	20	91	0	68	34	20	11	32	1.89
1540195--1540238	23	1.9	23	90	0	70	18	27	27	27	1.98
1540939--1540981	21	2.0	22	95	4	79	34	18	23	23	1.96
1541690--1541731	14	3.0	14	96	0	75	33	16	7	42	1.75
1549232--1549485	107	2.4	108	84	2	323	39	13	12	34	1.82
1549994--1550065	23	3.1	23	90	4	101	33	15	16	34	1.90
1550040--1550300	75	3.5	75	88	1	362	32	15	12	39	1.85
1550959--1551040	30	2.8	29	78	14	87	40	3	18	37	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1552884--1552927	3	14.7	3	100	0	88	68	0	0	31	0.90
1553274--1553354	41	2.0	41	95	0	144	24	17	16	41	1.89
1554396--1554463	23	3.4	19	69	20	50	39	0	4	55	1.20
1555583--1555641	23	2.6	23	86	2	75	20	40	18	20	1.91
1557459--1557521	11	5.7	11	77	9	58	74	4	1	19	1.08
1583847--1583893	22	2.1	22	96	0	85	31	4	14	48	1.63
1584516--1584561	20	2.3	20	96	0	83	36	15	21	26	1.93
1584980--1585022	23	1.9	22	90	4	68	23	0	4	72	1.04
1593231--1593274	13	3.4	13	80	0	52	15	2	13	68	1.31
1602329--1602370	21	2.0	21	100	0	84	33	28	23	14	1.94
1603165--1603222	20	2.7	20	86	10	71	22	22	22	32	1.98
1605990--1606048	24	2.5	24	77	0	64	23	11	15	49	1.77
1606703--1606745	18	2.4	17	81	11	50	34	2	2	60	1.22
1610108--1610174	24	2.8	24	86	4	82	13	17	19	49	1.80
1610129--1610175	12	3.9	12	78	10	51	14	17	19	48	1.81
1610134--1610188	24	2.3	24	83	0	65	20	14	16	49	1.80
1614295--1614353	24	2.5	24	88	0	91	20	13	16	49	1.80
1615103--1615166	32	2.0	32	100	0	128	31	28	18	21	1.97
1615482--1615888	39	10.5	39	86	2	543	36	15	16	31	1.90
1615482--1615888	77	5.2	78	87	1	552	36	15	16	31	1.90
1615482--1615888	157	2.6	155	86	2	559	36	15	16	31	1.90
1616117--1616528	110	3.8	109	84	3	531	43	18	8	28	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1616118--1616608	58	8.8	57	69	17	248	42	18	8	29	1.80
1618475--1618523	4	12.8	4	76	23	52	2	24	0	73	0.94
1618479--1618533	27	2.1	26	86	10	76	1	25	0	72	0.94
1618935--1619004	34	2.1	32	86	5	95	21	31	14	32	1.93
1619286--1619327	21	2.0	21	95	0	75	26	28	21	23	1.99
1619429--1619519	31	3.0	31	95	3	159	42	16	6	34	1.74
1620586--1620639	18	3.0	18	94	0	90	37	12	22	27	1.91
1624577--1624654	28	2.8	28	82	7	104	16	11	23	48	1.78
1627786--1627823	20	1.9	20	88	0	58	23	13	26	36	1.91
1628441--1628513	28	2.6	29	84	8	96	21	13	16	47	1.81
1628472--1628592	28	4.3	28	80	6	84	19	12	19	48	1.80
1628521--1628620	28	3.5	28	79	5	94	17	15	21	47	1.83
1642065--1642117	21	2.5	21	87	0	79	20	24	18	35	1.95
1642107--1642200	20	4.7	20	81	2	125	37	20	21	21	1.95
1642187--1642234	20	2.4	20	85	0	69	31	25	18	25	1.98
1643075--1643128	24	2.2	24	96	0	99	20	16	20	42	1.89
1645532--1645643	20	5.6	21	90	6	171	33	25	22	18	1.97
1645531--1645643	60	1.9	60	92	3	192	32	25	22	19	1.97
1645617--1645745	33	3.8	33	89	2	177	43	18	23	14	1.87
1645760--1645855	33	2.8	33	87	3	120	14	22	19	42	1.88
1645961--1645997	14	2.6	14	86	0	56	48	21	0	29	1.50
1646975--1647082	54	2.0	54	98	1	207	54	5	5	34	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1647444--1647536	42	2.2	42	80	3	107	22	17	39	20	1.92
1649545--1649599	20	2.8	20	82	0	65	49	20	16	14	1.80
1649587--1649659	33	2.2	34	85	7	96	39	26	20	13	1.90
1649984--1650049	22	3.0	22	90	0	105	21	15	39	24	1.91
1650246--1650399	20	7.7	20	88	1	236	21	20	19	38	1.93
1650226--1650399	60	2.9	61	86	2	244	22	20	20	37	1.95
1650396--1650441	21	2.2	21	88	0	65	41	17	23	17	1.90
1651038--1651120	21	4.0	21	88	0	121	20	22	22	33	1.97
1651277--1651328	16	3.1	17	78	13	63	59	3	0	36	1.16
1651696--1651765	15	4.5	15	67	13	52	60	1	2	35	1.21
1651829--1651928	21	4.8	21	92	0	173	30	22	27	21	1.98
1651936--1651976	21	2.0	21	100	0	82	26	24	24	24	2.00
1652043--1652079	19	1.9	19	88	0	56	24	16	27	32	1.96
1653060--1653132	37	2.0	37	91	0	119	54	13	15	16	1.71
1653290--1653357	22	3.2	22	67	12	70	29	8	20	41	1.82
1653289--1653371	41	2.0	41	97	0	157	32	8	19	39	1.81
1654156--1654194	17	2.3	17	90	0	60	28	7	23	41	1.82
1654550--1655034	112	4.3	113	89	3	705	32	13	12	41	1.81
1654571--1655034	225	2.1	225	90	2	729	32	13	12	42	1.81
1655119--1655357	76	3.2	73	91	2	354	34	12	12	40	1.81
1655578--1655627	23	2.2	23	82	7	57	34	12	12	42	1.79
1655433--1655944	158	3.2	157	89	2	760	33	12	12	42	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1655886--1655948	23	2.6	25	77	12	76	36	12	6	44	1.68
1660666--1660749	23	3.7	23	91	0	132	28	26	26	19	1.98
1661348--1661403	20	2.7	21	81	18	64	23	25	21	30	1.99
1663988--1664357	183	2.0	186	97	2	701	30	14	24	31	1.94
1672967--1673039	3	24.3	3	87	0	101	60	1	1	36	1.14
1674647--1674806	54	3.0	54	90	0	266	28	23	13	35	1.93
1679842--1679926	43	2.0	43	88	6	129	38	20	9	31	1.84
1682037--1682069	17	2.0	17	88	5	50	72	0	3	24	0.98
1682115--1682141	2	13.5	2	100	0	54	51	48	0	0	1.00
1683219--1683261	21	2.0	22	81	4	52	0	13	27	58	1.37
1683713--1683785	3	24.3	3	87	0	74	54	0	1	43	1.08
1684901--1685241	43	7.9	43	75	11	173	25	16	7	51	1.70
1684944--1685326	88	4.4	88	80	8	374	24	18	7	49	1.73
1684946--1685327	44	8.8	43	78	9	332	24	18	7	49	1.73
1685582--1685625	23	1.9	23	81	9	54	63	2	2	31	1.19
1688125--1688165	20	2.1	20	86	13	59	48	4	0	46	1.23
1688408--1688499	41	2.2	40	86	7	123	47	13	17	21	1.81
1688408--1688499	20	4.5	20	87	5	123	47	13	17	21	1.81
1688849--1688922	21	3.6	21	96	1	132	17	17	16	48	1.81
1688930--1688977	19	2.5	19	82	3	60	22	14	35	27	1.93
1689140--1689371	20	11.6	20	74	12	140	21	14	24	40	1.90
1689141--1689212	19	3.7	19	83	7	74	27	11	23	37	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1689156--1689326	60	2.8	60	86	5	188	20	15	23	40	1.90
1689179--1689371	80	2.4	80	80	6	219	19	15	24	39	1.91
1689195--1689366	60	2.9	60	86	5	188	18	16	25	39	1.91
1694291--1694330	17	2.3	18	83	16	57	10	5	7	77	1.11
1695119--1695158	15	2.6	15	88	4	53	12	27	30	30	1.93
1695647--1695824	97	1.8	98	89	6	281	51	6	2	38	1.43
1704548--1704626	31	2.5	31	91	0	122	35	12	13	37	1.83
1704767--1704796	15	1.9	16	93	6	53	53	0	0	46	1.00
1705196--1705346	77	2.0	77	90	2	241	29	13	11	46	1.77
1706050--1706108	21	2.8	21	86	0	73	22	8	18	50	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14