genome.fa.s8283.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008283.1 Hibiscus syriacus cultivar Beakdansim tig00110945_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2862730

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  4  of  14  ( 1608 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
493432--493475	21	2.1	21	95	0	79	34	31	18	15	1.92
493484--493647	63	2.6	63	98	0	310	19	19	26	34	1.96
493483--493833	105	3.3	106	84	6	444	20	18	25	36	1.95
493481--493671	63	3.1	62	92	1	285	19	18	26	35	1.95
493653--493833	63	2.8	63	87	1	254	20	16	24	37	1.93
493481--493836	42	8.4	40	79	10	261	20	18	25	36	1.95
494707--494883	21	8.6	20	78	12	155	33	27	17	22	1.96
494716--494839	19	6.2	19	82	10	149	33	29	16	21	1.95
494707--494837	59	2.1	61	87	5	185	32	29	16	21	1.95
494735--494873	42	3.4	42	90	2	210	33	26	17	22	1.96
503962--504073	57	2.0	55	79	11	120	32	17	20	29	1.96
506306--506387	23	3.6	22	70	8	67	24	21	25	28	1.99
506310--506406	44	2.2	44	81	7	117	24	19	25	29	1.98
512502--512543	21	1.9	23	85	9	61	47	9	4	38	1.57
514580--514683	55	1.9	55	89	0	163	24	25	7	43	1.80
518556--518589	3	11.7	3	87	6	52	61	0	0	38	0.96
518554--518600	9	5.3	9	87	5	60	55	0	0	44	0.99
524737--524809	29	2.5	30	80	17	82	30	17	4	47	1.66
530054--530107	11	4.3	13	80	19	62	55	0	0	44	0.99
530054--530114	16	3.9	16	78	6	72	57	0	0	42	0.98
530368--530576	91	2.3	91	92	0	337	28	17	18	35	1.94
530459--531098	127	4.9	127	71	15	545	29	17	18	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
530323--530794	218	2.2	218	91	1	741	29	17	17	35	1.93
530586--530971	91	4.3	91	90	1	584	28	17	18	34	1.94
530629--530876	43	5.5	42	66	14	138	27	17	18	36	1.93
530368--531371	395	2.5	395	91	1	1549	29	17	18	35	1.93
530977--531447	91	5.2	91	87	1	658	29	18	17	35	1.94
541971--542041	8	8.8	8	80	13	56	53	0	1	45	1.09
546141--546827	39	17.7	39	90	0	973	22	26	11	40	1.87
546297--546361	20	3.3	20	62	12	53	21	30	7	40	1.81
546833--547165	73	4.6	73	92	2	526	39	11	15	33	1.84
546953--547137	36	5.1	35	69	8	138	41	12	13	32	1.83
548603--548890	118	2.4	118	87	0	423	30	23	14	31	1.95
553190--553274	43	2.0	43	90	2	136	38	21	9	30	1.85
565979--566024	20	2.3	19	85	14	58	26	15	8	50	1.73
567780--568256	136	3.6	135	75	14	424	33	15	19	31	1.93
576523--576885	130	2.8	130	80	2	399	40	15	9	33	1.81
578017--578054	20	1.9	20	94	0	67	5	52	18	23	1.65
578988--579046	3	19.7	3	79	6	66	61	0	1	37	1.07
581102--581313	66	3.2	67	81	4	268	40	14	7	37	1.74
581218--581519	89	3.4	88	84	11	365	39	16	8	36	1.79
581369--581519	81	1.9	79	89	8	234	37	15	7	39	1.77
581487--581629	66	2.1	66	84	2	178	41	13	5	39	1.69
581156--581801	160	4.0	160	78	11	684	39	13	7	38	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
582338--582376	13	3.1	13	85	3	53	56	0	0	43	0.99
583490--583531	15	2.8	16	89	10	63	52	0	0	47	1.00
583482--583516	18	1.9	18	88	11	54	51	2	0	45	1.16
584541--584606	31	2.1	31	85	0	87	36	10	30	22	1.88
587184--587231	21	2.3	21	96	0	87	27	18	12	41	1.86
591832--591879	21	2.3	21	96	0	87	27	18	12	41	1.86
594966--595052	2	43.5	2	100	0	174	49	0	0	50	1.00
596639--596672	18	1.9	18	88	5	52	17	26	29	26	1.98
600850--600893	14	3.1	14	75	12	54	36	0	15	47	1.46
602603--602720	36	3.1	37	87	9	157	44	16	9	29	1.79
602758--602785	14	2.0	14	100	0	56	0	0	14	85	0.59
602911--602947	2	18.5	2	100	0	74	51	0	0	48	1.00
603495--603575	27	3.0	27	71	7	67	40	4	1	53	1.31
604069--604677	194	3.3	190	82	10	788	42	12	12	31	1.81
604223--604583	173	2.1	173	94	1	625	43	12	13	30	1.81
605258--605335	19	4.1	19	69	9	59	44	3	17	33	1.67
604931--605392	231	2.0	225	85	5	615	36	7	20	35	1.81
610383--610947	179	3.1	179	84	7	650	40	12	16	30	1.85
610555--610977	197	2.1	199	90	2	654	40	12	16	31	1.85
612146--612184	15	2.4	16	83	16	53	43	25	25	5	1.75
613846--613929	6	14.0	6	83	5	89	30	9	7	52	1.61
613824--613910	36	2.4	35	84	7	95	29	10	8	51	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
613855--613929	30	2.5	30	93	0	123	30	9	6	53	1.59
615307--615344	19	2.0	19	100	0	76	47	10	15	26	1.78
615668--615719	20	2.6	20	100	0	104	21	11	13	53	1.70
616336--616387	21	2.5	21	100	0	104	44	21	11	23	1.84
618270--618312	2	21.5	2	100	0	86	51	48	0	0	1.00
618318--618351	2	17.0	2	100	0	68	50	0	0	50	1.00
618767--619237	226	2.1	225	89	2	714	31	16	14	37	1.89
619099--619359	117	2.2	118	87	2	373	29	18	14	37	1.90
619948--619977	14	2.1	15	93	6	53	46	0	0	53	1.00
620422--620530	45	2.4	45	81	3	130	41	34	17	6	1.75
622291--622337	24	2.0	24	83	8	60	34	0	8	57	1.29
625752--626155	190	2.1	191	83	4	503	39	6	9	45	1.62
627683--627720	8	4.6	8	96	3	67	47	39	0	13	1.42
633349--633385	19	1.9	19	94	0	65	24	10	27	37	1.88
633957--634112	65	2.4	65	81	5	183	28	21	16	33	1.95
639434--639504	23	3.2	23	70	8	65	26	23	21	28	1.99
639409--639524	44	2.7	44	87	1	162	30	22	19	27	1.98
641310--641474	90	1.8	89	92	1	276	35	10	6	47	1.62
654456--654779	74	4.4	75	71	9	247	35	20	22	20	1.96
654973--655672	223	3.1	224	79	2	670	33	19	17	29	1.94
659157--659242	24	3.6	24	79	6	86	11	13	23	51	1.74
660367--660421	16	3.4	16	94	0	101	7	12	25	54	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
664126--664274	28	5.4	28	66	9	90	23	22	27	26	2.00
664122--664363	55	4.4	55	78	4	254	26	21	25	26	1.99
664119--664360	110	2.2	110	85	2	326	26	21	25	26	1.99
664480--664635	81	1.9	81	88	0	231	33	19	28	19	1.96
675936--676025	45	2.0	45	97	0	171	35	26	16	21	1.94
676712--676744	13	2.5	13	90	9	50	30	0	6	63	1.18
676935--677057	3	41.0	3	100	0	246	33	0	0	66	0.92
680167--680280	48	2.4	48	84	1	138	42	18	21	17	1.90
680505--680537	13	2.5	13	100	0	66	42	15	12	30	1.83
681586--681625	21	1.9	21	85	10	55	37	12	7	42	1.71
698730--698768	14	2.7	15	88	7	55	51	0	12	35	1.40
698730--698768	15	2.7	14	84	7	51	51	0	12	35	1.40
702236--702340	37	2.8	37	86	0	147	29	15	14	40	1.86
705400--705453	2	27.0	2	100	0	108	50	0	0	50	1.00
705942--706005	28	2.3	27	76	12	67	46	9	10	32	1.71
706121--706286	55	3.0	55	94	0	287	34	10	7	46	1.66
709313--709397	14	5.9	14	69	28	54	69	0	0	30	0.89
709323--709396	7	10.4	7	76	17	73	67	0	0	32	0.91
709431--709542	44	2.6	43	78	18	119	41	6	6	46	1.54
709583--709643	14	4.7	14	70	15	51	39	6	9	44	1.64
709520--709765	37	6.6	37	79	11	200	40	9	5	44	1.59
709522--709760	38	6.4	36	79	12	168	41	9	5	44	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
709519--709765	111	2.2	110	83	9	306	40	9	5	44	1.59
717974--718040	24	2.8	24	84	4	91	20	16	28	34	1.95
721827--721852	11	2.4	11	100	0	52	23	38	0	38	1.55
722839--722878	21	2.1	20	82	17	50	70	2	0	27	1.01
722948--722974	2	13.5	2	100	0	54	48	0	0	51	1.00
722909--723011	51	2.0	50	87	9	147	42	5	2	48	1.42
722961--723086	38	3.3	38	78	15	136	41	7	7	44	1.59
722962--723086	37	3.4	37	83	10	157	40	7	7	44	1.59
731142--731201	31	1.9	31	82	0	75	31	23	5	40	1.76
732472--732554	21	3.9	21	91	1	139	25	18	18	38	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14