genome.fa.s8283.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008283.1 Hibiscus syriacus cultivar Beakdansim tig00110945_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2862730

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  6  of  14  ( 1608 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
998240--998325	23	3.9	22	75	13	86	20	27	29	22	1.99
1005684--1005849	83	2.0	83	88	2	244	42	4	9	43	1.57
1013817--1013879	24	2.7	24	82	2	83	30	23	23	22	1.99
1013859--1013945	23	3.8	23	86	6	97	31	24	24	20	1.98
1016824--1016871	21	2.3	21	88	0	69	41	0	2	56	1.11
1016818--1016864	18	2.7	18	73	3	51	40	0	2	57	1.11
1034099--1034168	27	2.4	29	93	6	117	34	0	24	41	1.55
1034424--1034455	13	2.4	14	85	15	50	59	0	0	40	0.97
1035103--1035216	56	2.0	56	94	0	201	33	28	9	28	1.89
1036144--1036254	32	3.6	32	95	3	192	18	38	22	19	1.93
1038277--1038309	15	2.1	16	88	5	50	9	15	66	9	1.43
1049440--1049533	44	2.1	43	79	11	102	25	18	25	30	1.98
1054496--1054675	65	2.8	64	80	15	201	28	17	24	29	1.97
1054516--1054675	65	2.5	64	85	7	209	28	16	23	30	1.97
1054516--1054716	65	3.1	64	77	13	198	27	17	23	31	1.97
1055979--1056020	21	2.0	21	90	9	68	28	28	19	23	1.98
1056218--1056277	29	2.0	31	87	6	88	43	15	6	35	1.72
1061571--1061631	16	3.8	16	95	0	113	55	22	13	8	1.64
1062355--1062400	24	1.9	24	86	8	67	60	15	8	15	1.57
1062684--1062731	10	4.4	10	78	19	51	54	22	12	10	1.68
1062691--1062721	14	2.2	14	94	0	53	54	22	12	9	1.67
1062670--1062732	24	2.6	24	90	5	92	53	19	14	12	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1067064--1067104	22	1.9	21	85	5	55	31	7	14	46	1.72
1068878--1068978	51	2.0	50	94	1	175	42	11	10	34	1.77
1072827--1072877	11	4.6	11	81	18	54	80	0	1	17	0.81
1072833--1072879	20	2.3	20	89	7	69	82	0	0	17	0.66
1072838--1072894	20	3.0	18	78	16	62	80	1	1	15	0.87
1072818--1072887	14	4.8	14	77	19	63	78	0	5	15	0.93
1072826--1072892	9	7.6	9	78	18	52	79	1	2	16	0.94
1072833--1072887	14	4.1	13	81	11	67	81	0	1	16	0.77
1074083--1074251	37	4.8	34	77	13	114	45	6	2	44	1.44
1074114--1074177	33	1.9	33	100	0	128	48	6	3	42	1.44
1074083--1074387	70	4.3	70	80	9	289	44	6	3	45	1.46
1074119--1074390	36	7.6	36	79	10	240	43	6	4	46	1.48
1079404--1079506	35	2.9	34	85	5	127	57	6	18	17	1.61
1087672--1087710	11	3.6	11	83	16	55	69	0	0	30	0.89
1087670--1087710	14	2.8	15	82	17	59	68	0	0	31	0.90
1087672--1087707	18	2.0	18	89	10	56	69	0	0	30	0.89
1087722--1087963	37	6.5	37	73	13	106	45	7	3	43	1.49
1087761--1088001	74	3.2	73	76	12	231	42	7	4	45	1.51
1087761--1088003	37	6.5	37	76	9	192	42	7	4	45	1.51
1091445--1091796	118	3.0	116	83	2	407	25	14	21	38	1.91
1093403--1093449	2	23.5	2	100	0	94	51	0	0	48	1.00
1097288--1097519	118	2.0	118	89	3	360	26	13	19	40	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1097288--1097581	118	2.5	118	83	3	349	26	12	19	41	1.87
1101119--1101156	20	1.9	20	89	10	60	15	21	0	63	1.31
1101745--1101778	15	2.3	15	89	0	50	35	8	20	35	1.84
1103542--1104032	56	8.9	56	89	2	715	34	10	19	35	1.86
1103542--1104032	111	4.4	111	90	2	727	34	10	19	35	1.86
1103542--1104032	167	3.0	167	90	3	756	34	10	19	35	1.86
1109142--1109192	23	2.2	23	92	0	84	52	9	31	5	1.58
1110325--1110700	111	3.4	110	91	2	587	35	10	18	35	1.85
1110336--1110699	55	6.6	55	89	2	552	35	10	18	35	1.85
1113815--1113858	19	2.3	19	92	0	70	31	25	25	18	1.97
1114473--1114519	19	2.4	19	82	3	58	25	23	21	29	1.99
1127470--1127531	31	2.0	31	90	3	99	41	3	6	48	1.45
1130967--1131013	24	2.0	24	82	0	58	25	10	23	40	1.87
1131132--1131188	28	2.0	30	82	6	73	54	7	12	26	1.63
1131613--1131650	16	2.4	16	82	13	51	57	0	2	39	1.12
1133762--1133949	31	6.0	31	78	10	186	30	18	18	31	1.95
1133787--1133952	63	2.7	63	95	0	289	31	18	18	32	1.94
1136513--1136657	30	4.8	30	81	3	175	17	12	7	62	1.53
1140306--1140357	19	2.9	19	76	23	60	69	5	17	7	1.33
1140293--1140357	34	1.9	34	87	6	96	69	6	18	6	1.31
1140332--1140416	12	6.7	13	77	18	90	78	5	10	4	1.06
1140328--1140416	26	3.6	23	75	22	83	78	5	11	4	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1141597--1141669	37	1.9	38	86	8	105	28	23	13	34	1.93
1141801--1141896	30	3.2	30	94	2	158	28	15	14	41	1.86
1141801--1141912	30	3.7	29	91	4	145	27	16	14	41	1.86
1142413--1142467	3	18.7	3	77	17	53	32	0	3	63	1.12
1144016--1144111	30	3.2	30	76	8	97	15	9	10	64	1.49
1149516--1149542	6	4.5	6	100	0	54	14	0	55	29	1.40
1149895--1150003	31	3.5	31	84	0	128	21	26	13	38	1.91
1150418--1150471	3	18.0	3	81	7	65	38	0	0	61	0.96
1150412--1150466	18	3.1	18	92	2	85	40	0	0	60	0.97
1152940--1153005	28	2.3	28	80	10	71	36	0	0	63	0.95
1152973--1153023	20	2.5	22	81	12	63	27	0	1	70	0.98
1163106--1163182	22	3.5	22	83	0	91	35	14	12	37	1.84
1163839--1163964	45	2.8	45	86	2	164	23	22	19	34	1.97
1163982--1164095	45	2.5	45	84	2	147	25	21	21	31	1.98
1163860--1164336	121	4.0	121	93	1	760	23	22	20	33	1.97
1164027--1164169	76	1.9	74	84	2	187	23	21	21	32	1.98
1164109--1164206	45	2.2	45	90	0	151	23	25	21	29	1.99
1164224--1164371	45	3.3	45	86	1	224	24	23	18	33	1.96
1164499--1164537	18	2.2	18	90	0	60	38	0	2	58	1.12
1166213--1166409	106	1.8	107	80	7	236	41	7	7	44	1.60
1166339--1166373	17	2.0	18	88	5	54	42	0	2	54	1.15
1166263--1166460	106	1.9	106	81	10	244	40	8	8	42	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1191159--1191247	22	4.1	22	79	2	92	38	13	16	31	1.88
1195306--1195346	20	2.0	20	95	0	73	36	31	17	14	1.90
1195867--1197201	200	6.7	200	88	2	1847	31	14	13	40	1.85
1195880--1197201	395	3.3	395	88	4	1905	30	14	13	40	1.85
1207820--1208424	302	2.0	300	97	2	1142	28	14	12	43	1.82
1208122--1208761	181	3.5	180	86	3	842	28	15	12	43	1.84
1208922--1208951	11	2.6	11	94	5	51	33	20	10	36	1.86
1217833--1217874	18	2.4	18	96	4	77	42	0	0	57	0.99
1224209--1224276	35	1.9	35	82	5	84	51	2	2	42	1.32
1225557--1225589	17	1.9	17	93	0	57	24	6	30	39	1.79
1226560--1226634	30	2.5	30	82	2	87	29	9	17	44	1.80
1227256--1227316	32	1.9	32	83	6	79	18	29	27	24	1.98
1228075--1228143	34	2.0	34	85	0	93	28	23	15	31	1.95
1230942--1230967	13	2.0	13	100	0	52	38	0	15	46	1.46
1231537--1231588	18	2.9	18	100	0	104	17	23	32	26	1.96
1232379--1232412	16	2.1	17	88	5	52	44	2	11	41	1.56
1233235--1233921	331	2.1	332	84	4	884	34	18	18	28	1.94
1233224--1233925	83	8.5	83	84	3	729	34	17	18	28	1.94
1234920--1234991	32	2.2	32	85	0	99	55	18	4	22	1.59
1238108--1238137	16	1.9	16	93	6	53	60	0	3	36	1.14
1240589--1240681	15	6.8	13	67	26	59	75	0	7	17	1.03
1240719--1240748	13	2.4	13	94	5	53	83	6	6	3	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1240780--1240837	23	2.5	23	77	8	64	68	0	1	29	0.99
1241929--1241953	4	6.2	4	100	0	50	76	0	0	24	0.80
1250239--1250263	11	2.3	11	100	0	50	40	8	8	44	1.63
1250148--1250572	38	11.6	36	81	10	384	44	3	6	45	1.47
1251748--1251779	4	8.2	4	93	6	57	25	0	0	75	0.81
1251965--1252001	16	2.2	18	85	9	51	0	18	0	81	0.70
1252003--1252085	36	2.3	37	83	6	98	24	1	6	68	1.19
1256950--1259173	84	27.1	82	77	6	1843	31	23	19	25	1.98
1256950--1259173	164	13.6	162	78	7	1846	31	23	19	25	1.98
1256950--1259173	248	9.0	244	79	7	1612	31	23	19	25	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14