genome.fa.s8283.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008283.1 Hibiscus syriacus cultivar Beakdansim tig00110945_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2862730

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  3  of  14  ( 1608 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
363492--363543	14	3.0	19	68	26	60	9	23	21	46	1.80
363491--363544	17	3.2	17	71	23	60	9	22	20	48	1.78
363659--363695	14	2.6	14	91	0	65	45	24	0	29	1.53
365052--365118	21	3.2	21	68	4	55	19	20	35	23	1.95
365052--365174	42	2.9	41	79	7	113	22	18	36	21	1.95
367172--367341	19	9.1	19	82	8	188	44	20	22	12	1.85
367337--367382	20	2.4	19	82	7	65	6	15	23	54	1.64
367342--367379	20	1.9	20	94	0	67	2	15	23	57	1.51
367995--368048	20	2.7	20	88	0	81	27	16	22	33	1.95
368119--368159	21	2.0	21	85	0	55	34	31	17	17	1.93
368731--368763	2	17.5	2	87	12	52	48	0	0	51	1.00
368777--369050	38	7.1	39	76	10	237	42	3	8	45	1.49
368777--369050	39	7.1	38	77	10	254	42	3	8	45	1.49
369004--369097	33	2.8	32	79	14	91	44	6	5	43	1.52
369177--369208	16	1.9	17	93	6	57	34	6	3	56	1.40
370500--370577	41	2.0	38	80	12	86	21	6	1	70	1.17
373199--373460	94	2.7	95	87	4	357	32	16	17	33	1.93
374143--375685	80	18.9	80	84	3	1740	34	22	19	24	1.97
374143--375685	247	6.3	244	83	3	1759	34	22	19	24	1.97
376184--376224	2	21.0	2	90	5	66	48	2	0	48	1.14
376314--376350	2	18.5	2	100	0	74	51	0	0	48	1.00
376247--376330	34	2.5	34	74	14	84	40	2	9	47	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
376334--376517	38	4.9	36	84	7	217	47	3	5	43	1.42
376336--376604	37	7.2	35	77	14	188	46	3	6	43	1.46
376636--376688	14	3.7	14	80	7	54	33	3	0	62	1.13
377996--378046	15	3.3	15	81	13	59	19	5	0	74	1.02
379060--379085	2	13.0	2	100	0	52	50	0	0	50	1.00
380931--380987	5	12.0	5	78	17	59	15	5	0	78	0.91
380945--380987	23	1.9	22	90	4	68	18	2	0	79	0.85
380943--381009	28	2.5	26	81	11	80	14	5	1	77	1.03
393545--393600	29	1.9	29	82	7	69	35	30	8	25	1.86
399071--399111	14	3.1	13	89	10	57	58	0	26	14	1.37
399766--399830	31	2.1	31	82	5	78	26	12	16	44	1.83
400887--401140	96	2.6	95	81	3	285	33	15	18	32	1.92
408463--408489	4	6.8	4	100	0	54	22	0	0	77	0.76
412477--412501	12	2.1	12	100	0	50	60	8	0	32	1.26
413419--413550	30	4.4	30	79	9	119	58	9	12	19	1.61
413810--414076	145	1.8	146	84	7	364	19	23	19	37	1.94
413696--415174	564	2.7	550	83	4	1853	21	24	18	35	1.95
415426--415995	129	4.4	129	87	1	757	24	18	31	24	1.97
415526--415965	46	10.4	40	64	16	131	22	18	33	25	1.97
415551--415888	46	7.8	45	68	18	198	23	19	33	24	1.97
415426--415995	257	2.2	257	86	2	793	24	18	31	24	1.97
416061--416187	33	3.8	33	72	12	105	38	11	18	31	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
416061--416277	69	3.2	67	78	7	206	40	12	18	29	1.87
416061--416316	66	3.8	65	77	12	198	39	12	18	29	1.88
416390--416638	36	7.0	36	74	13	140	39	14	19	26	1.91
416518--416636	38	3.1	38	87	2	166	36	15	24	24	1.94
416523--416637	39	3.0	39	88	3	153	35	14	24	25	1.94
416767--416993	124	1.8	124	91	1	375	27	18	22	32	1.97
417350--417383	15	2.3	15	89	0	50	26	29	17	26	1.98
418432--418490	15	4.1	15	77	14	54	3	16	8	71	1.25
421485--421522	17	2.2	18	86	9	53	60	5	5	28	1.40
422162--422574	145	2.8	145	82	5	469	21	22	19	36	1.95
422725--422829	37	2.8	37	82	0	129	41	14	12	31	1.82
423173--423232	15	3.9	15	74	20	52	35	3	0	61	1.12
423175--423226	18	2.7	18	77	19	52	32	3	0	63	1.12
423670--423707	2	19.0	2	100	0	76	50	0	0	50	1.00
428432--428970	183	2.9	183	95	0	945	27	19	20	31	1.97
430114--430239	36	3.5	35	71	9	101	27	17	12	42	1.86
430098--430235	72	1.9	72	85	5	190	27	18	11	42	1.84
430205--430458	105	2.5	101	88	5	375	29	20	12	37	1.89
430362--430432	36	2.0	36	85	0	97	22	18	18	40	1.91
430633--431158	105	5.0	104	87	3	709	33	26	17	21	1.96
430633--431158	210	2.5	205	88	3	784	33	26	17	21	1.96
431701--431805	37	2.8	37	82	0	129	42	13	14	29	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
432640--432669	2	15.0	2	92	0	51	46	0	0	53	1.00
433283--433322	3	13.3	3	100	0	80	65	0	0	35	0.93
434323--434384	30	2.0	30	81	9	72	24	12	29	33	1.92
434603--434696	47	2.0	47	93	0	161	31	6	18	43	1.75
434769--434822	19	2.9	19	76	17	51	42	3	1	51	1.30
435143--435314	60	2.9	60	81	1	193	31	20	6	41	1.78
435775--435828	19	2.9	19	76	17	51	42	3	1	51	1.30
436142--436321	60	3.0	60	82	1	191	32	21	5	41	1.74
436782--436835	19	2.9	19	76	17	51	42	3	1	51	1.30
437148--437244	31	3.2	31	66	8	74	35	19	3	42	1.67
437149--437331	60	3.0	60	80	3	181	33	22	4	38	1.76
443762--443795	16	2.1	17	94	5	61	41	11	0	47	1.40
445330--445361	15	2.1	15	94	0	55	62	21	0	15	1.32
445605--445637	15	2.3	15	89	5	50	63	21	0	15	1.30
445640--445712	23	3.2	23	90	1	121	39	21	12	26	1.89
447800--447867	7	9.7	7	74	6	57	17	4	38	39	1.70
447949--448049	7	14.9	7	78	4	100	14	1	39	43	1.57
447980--448049	27	2.7	26	86	6	88	12	1	40	45	1.51
450050--450087	20	1.9	20	100	0	76	18	7	15	57	1.62
453259--453315	23	2.5	22	80	8	69	45	3	1	49	1.29
454649--454697	25	2.0	25	91	0	80	18	24	10	46	1.79
458423--458457	17	2.1	17	100	0	70	17	5	5	71	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
458425--458463	17	2.2	17	90	4	60	23	5	5	66	1.32
458592--458652	3	19.3	3	86	9	86	32	4	0	62	1.17
458659--458723	21	3.0	21	80	14	71	15	4	7	72	1.24
458613--458713	7	15.3	6	87	10	67	22	1	4	70	1.17
458659--458713	7	8.1	7	88	9	71	14	3	9	72	1.23
458886--458943	23	2.5	23	83	8	64	13	10	1	74	1.15
458945--458973	11	2.7	11	94	5	51	6	6	6	79	1.06
458884--458996	9	12.1	9	70	14	50	12	7	3	76	1.13
458846--458991	14	10.5	14	64	20	65	13	8	3	73	1.19
462686--462884	95	2.1	95	83	2	256	36	15	17	31	1.90
463911--464057	66	2.2	66	91	0	240	37	23	12	26	1.90
464252--464439	36	5.2	36	96	0	331	26	20	13	38	1.90
464325--464677	137	2.6	137	86	3	548	28	20	12	38	1.90
464461--464576	36	3.2	36	79	6	117	27	19	14	37	1.91
464594--464677	36	2.3	36	93	0	141	28	23	13	34	1.92
464516--464704	101	1.9	101	90	4	301	29	20	12	38	1.89
464675--464743	35	2.0	34	86	8	95	46	17	5	30	1.71
466620--466656	18	2.0	18	89	5	56	21	8	2	67	1.29
466682--466712	2	15.5	2	100	0	62	48	0	0	51	1.00
466778--466841	3	21.3	3	78	15	62	28	4	0	67	1.11
466820--466880	25	2.5	24	79	12	61	24	1	1	72	1.03
466921--466965	21	2.1	21	88	8	65	15	6	0	77	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
467016--467131	10	11.4	10	68	21	55	17	4	2	75	1.07
467017--467115	50	2.0	50	82	4	119	18	5	2	74	1.09
467103--467149	24	1.9	25	82	4	60	12	8	4	74	1.19
468961--469032	37	2.0	37	83	8	94	34	4	8	52	1.51
469802--469856	10	5.2	10	76	10	56	61	12	9	16	1.55
469784--469856	14	5.1	14	77	12	69	63	15	8	13	1.52
470025--470142	24	5.0	23	77	8	112	58	16	10	15	1.63
472086--472127	17	2.5	17	84	0	57	42	11	14	30	1.81
482840--482868	10	2.7	11	94	5	51	31	0	17	51	1.45
488635--488689	21	2.5	22	94	2	94	16	21	43	18	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14