genome.fa.s8645.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008645.1 Hibiscus syriacus cultivar Beakdansim tig00111621_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4138222

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   

This is table  10  of  22  ( 2605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1757952--1758149	96	2.1	95	83	4	247	36	20	17	25	1.94
1759690--1759714	12	2.1	12	100	0	50	68	0	0	32	0.90
1759775--1759815	15	2.7	15	92	0	64	31	4	36	26	1.78
1759775--1759815	3	13.7	3	89	0	55	31	4	36	26	1.78
1762887--1762948	24	2.6	24	84	0	79	56	19	11	12	1.66
1762886--1762971	34	2.5	33	76	14	86	53	19	12	13	1.72
1764232--1764361	62	2.1	62	97	0	242	27	28	13	30	1.95
1767385--1767444	3	20.0	3	89	0	75	30	1	36	31	1.68
1773669--1773697	4	7.2	4	100	0	58	24	51	0	24	1.48
1774012--1774048	18	2.0	20	84	10	51	40	5	24	29	1.77
1778925--1779006	31	2.7	31	81	5	87	41	4	4	48	1.46
1782098--1782143	16	2.9	15	84	9	56	28	2	4	65	1.23
1784413--1784456	21	2.1	21	95	0	79	22	25	25	27	2.00
1785143--1785454	31	10.0	31	72	11	170	31	18	18	32	1.95
1785147--1785454	63	4.9	63	87	1	433	31	18	18	32	1.95
1785194--1785437	32	7.8	31	73	15	198	31	17	17	33	1.93
1785143--1785454	126	2.5	126	90	2	477	31	18	18	32	1.95
1788150--1788233	34	2.5	33	81	12	91	61	14	2	21	1.43
1788146--1788222	34	2.2	34	84	11	95	61	16	1	20	1.42
1790501--1790539	17	2.3	18	82	13	55	66	2	0	30	1.05
1790483--1790540	25	2.3	26	84	3	73	65	1	1	31	1.13
1790725--1790802	37	2.1	37	95	0	138	21	23	26	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1792419--1792493	38	2.0	38	89	0	114	36	18	5	40	1.74
1793060--1793092	16	1.9	17	88	11	50	81	0	3	15	0.80
1798073--1798102	5	5.8	5	96	4	51	60	0	3	36	1.14
1798114--1798160	22	2.2	20	79	17	51	29	0	8	61	1.25
1798121--1798178	22	2.6	23	81	10	66	27	0	3	68	1.05
1798124--1798179	16	3.8	14	75	17	51	26	0	3	69	1.04
1798160--1798211	26	2.0	25	85	3	68	26	0	1	71	0.97
1807834--1807868	18	1.9	18	88	0	52	25	31	5	37	1.80
1818627--1818660	2	17.0	2	100	0	68	50	0	0	50	1.00
1819847--1820278	143	3.0	144	94	2	735	41	13	8	36	1.75
1821720--1821758	19	2.1	19	100	0	78	25	0	10	64	1.25
1821754--1821801	25	2.0	23	84	8	60	31	2	0	66	1.03
1821812--1821869	30	1.9	31	89	3	91	53	17	1	27	1.53
1822699--1822735	17	2.1	18	90	5	58	37	0	0	62	0.96
1823860--1824253	118	3.4	118	72	13	397	37	14	17	29	1.90
1823978--1824392	108	3.7	109	72	13	344	37	14	16	32	1.88
1823663--1824349	226	3.0	224	92	1	1079	37	14	17	31	1.89
1824156--1824201	23	2.0	24	86	4	67	32	13	21	32	1.92
1824503--1824532	2	15.0	2	100	0	60	50	0	0	50	1.00
1824532--1824578	2	23.5	2	100	0	94	0	0	48	51	1.00
1826290--1826322	2	16.5	2	100	0	66	51	0	0	48	1.00
1827160--1827256	32	3.1	32	78	14	128	28	17	18	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1827159--1827259	31	3.2	31	81	10	125	28	18	18	33	1.95
1827247--1827340	30	3.1	30	90	3	136	20	21	27	30	1.98
1831371--1831467	32	3.1	32	77	14	119	28	17	17	36	1.93
1831370--1831470	31	3.2	31	79	10	116	28	18	17	34	1.94
1831458--1831551	30	3.1	30	90	3	136	20	21	27	30	1.98
1833415--1833473	21	2.8	21	97	0	109	52	13	10	23	1.71
1834314--1834350	18	2.0	19	94	5	67	27	16	8	48	1.74
1834320--1834361	18	2.3	18	87	0	57	33	14	9	42	1.78
1835745--1835855	6	18.5	6	77	7	100	52	5	11	30	1.60
1835745--1835855	30	3.7	30	89	4	145	52	5	11	30	1.60
1836190--1836219	15	2.0	15	93	0	51	50	13	6	30	1.67
1837994--1838019	2	13.0	2	100	0	52	50	0	0	50	1.00
1838812--1839137	179	1.8	175	87	5	485	35	13	11	39	1.81
1838949--1839563	200	3.1	197	84	3	741	32	14	12	40	1.83
1845526--1845573	18	2.6	18	86	3	60	52	16	0	31	1.45
1847455--1847498	3	14.7	3	80	0	52	0	56	0	43	0.99
1847443--1847506	9	7.1	9	85	0	56	0	53	1	45	1.10
1847439--1847498	12	5.0	12	91	0	93	0	53	0	46	1.00
1849052--1849129	19	4.1	19	70	9	59	35	19	1	43	1.59
1849724--1850248	194	2.7	193	85	2	667	31	14	12	41	1.83
1851774--1851812	21	1.9	20	89	5	60	71	7	12	7	1.29
1852257--1852298	21	2.0	21	86	9	59	54	2	2	40	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1852261--1852290	15	1.9	16	93	6	53	56	3	0	40	1.16
1852791--1852822	16	1.9	17	93	6	57	56	3	0	40	1.15
1852908--1852948	21	1.9	22	85	5	57	53	9	2	34	1.47
1853245--1853284	2	20.5	2	94	5	73	52	0	0	47	1.00
1853411--1853444	13	2.5	13	90	4	50	52	11	0	35	1.38
1854054--1854107	20	2.8	19	71	15	56	18	0	9	72	1.11
1854974--1855109	60	2.3	58	79	9	141	30	25	8	36	1.85
1859411--1859450	19	2.1	19	86	9	55	40	17	10	32	1.83
1860546--1860587	18	2.3	18	91	0	66	47	9	0	42	1.36
1863663--1863748	28	3.0	28	76	10	84	40	3	2	53	1.31
1863758--1863845	28	3.1	26	75	16	79	38	9	1	51	1.41
1863759--1863956	31	6.5	30	76	9	102	37	6	3	52	1.45
1863833--1863906	32	2.4	29	82	14	94	37	6	5	50	1.52
1863798--1863976	31	5.8	31	74	12	127	37	5	3	52	1.43
1863980--1864104	29	4.3	29	81	4	153	54	0	5	39	1.30
1875837--1875938	42	2.5	41	80	1	123	23	23	21	31	1.98
1875475--1876194	255	2.8	254	89	1	1064	32	16	16	34	1.92
1880187--1880234	22	2.1	23	85	11	64	39	6	0	54	1.26
1880203--1880245	15	2.8	15	82	3	50	41	6	0	51	1.29
1891669--1891775	39	2.7	39	83	12	148	45	0	16	37	1.48
1892247--1892296	24	2.1	24	84	0	64	44	14	6	36	1.69
1892932--1892988	3	19.0	3	96	0	87	33	5	0	61	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1894546--1894574	2	14.5	2	100	0	58	48	0	0	51	1.00
1896208--1896248	20	2.0	21	95	4	75	31	24	14	29	1.95
1897724--1897757	16	2.1	16	100	0	68	44	0	38	17	1.49
1902858--1902894	12	3.1	12	88	0	56	21	51	0	27	1.48
1902849--1902894	24	1.9	24	86	0	65	26	52	0	21	1.47
1904373--1904399	13	2.1	13	100	0	54	40	7	7	44	1.60
1904741--1904794	20	2.4	23	76	20	69	35	22	14	27	1.93
1906676--1906733	20	2.6	22	89	10	84	27	22	20	29	1.99
1906722--1906842	64	1.9	64	81	6	147	24	23	16	35	1.95
1906721--1906858	64	2.2	63	79	8	145	25	21	18	34	1.96
1910955--1910992	20	1.9	20	100	0	76	23	23	21	31	1.98
1910954--1911012	20	2.8	20	84	10	73	28	20	20	30	1.97
1911000--1911160	64	2.5	63	79	5	171	24	22	19	33	1.97
1917092--1917205	25	4.5	25	76	9	88	23	0	25	50	1.49
1917125--1917205	26	3.2	26	80	1	92	23	0	24	51	1.48
1919023--1919079	29	2.0	29	85	0	78	29	15	5	49	1.67
1925164--1925383	54	4.1	54	77	7	223	28	10	21	40	1.85
1926089--1926126	18	2.1	18	90	0	58	36	18	21	23	1.95
1926277--1926377	37	2.7	38	75	3	105	20	15	17	45	1.85
1926705--1927281	135	4.3	135	84	0	726	35	17	19	28	1.94
1928597--1928653	29	2.0	29	85	0	78	29	15	5	49	1.67
1928609--1928664	29	1.9	29	85	7	78	26	19	3	50	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1931474--1931515	21	2.0	21	86	9	59	35	14	11	38	1.83
1934289--1934336	24	2.0	24	88	8	71	35	12	18	33	1.89
1938544--1938731	101	1.9	101	81	2	234	29	15	22	32	1.95
1945124--1945497	54	6.9	54	82	5	407	40	18	10	30	1.84
1947390--1947422	11	3.1	11	91	4	50	12	18	0	69	1.18
1947626--1947668	10	3.9	10	78	21	50	23	18	4	53	1.63
1947625--1947671	24	2.0	24	100	0	94	23	17	8	51	1.72
1954805--1954838	17	2.1	17	94	5	61	55	5	2	35	1.39
1955581--1955643	27	2.3	28	76	20	71	61	0	6	31	1.21
1956500--1956703	100	2.0	101	91	3	333	36	1	7	54	1.40

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22