genome.fa.s8645.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008645.1 Hibiscus syriacus cultivar Beakdansim tig00111621_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4138222

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   

This is table  4  of  22  ( 2605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
626215--626264	19	2.7	18	87	9	73	26	28	30	16	1.96
626215--626264	9	5.3	9	80	7	55	26	28	30	16	1.96
633485--633562	19	4.1	19	79	14	88	26	28	26	17	1.98
633485--633533	10	5.1	10	78	11	50	24	30	26	18	1.98
633489--633582	9	9.7	10	77	11	81	27	26	26	19	1.99
633484--633581	29	3.4	28	80	8	90	27	26	27	18	1.98
640488--640543	22	2.7	21	76	15	62	17	25	32	25	1.97
649709--649842	65	2.1	64	84	4	171	28	20	18	32	1.97
649727--649862	65	2.1	64	83	6	168	28	22	18	30	1.97
653198--653224	13	2.1	13	100	0	54	37	7	22	33	1.82
653236--653262	4	6.8	4	100	0	54	25	0	0	74	0.83
655905--656003	44	2.2	44	90	0	153	31	19	20	29	1.97
656421--656461	18	2.2	19	83	12	50	19	0	9	70	1.14
656486--656523	12	3.0	13	84	7	60	34	13	5	47	1.65
663342--663454	33	3.5	33	77	10	110	71	3	16	7	1.24
663406--663483	31	2.5	30	80	10	86	76	5	15	2	1.06
663413--663510	15	7.2	13	70	18	65	78	5	13	3	1.03
663401--663493	6	15.2	6	71	16	57	76	4	16	3	1.08
665063--665319	86	3.0	86	90	0	388	29	23	22	24	1.99
665385--665632	85	2.9	83	81	6	284	34	22	17	25	1.96
666208--666475	40	6.4	40	64	16	103	26	28	17	27	1.98
666147--666402	129	2.0	129	87	1	370	26	28	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
666164--666450	129	2.2	129	84	1	360	27	28	17	27	1.97
666335--666521	83	2.3	82	81	8	236	27	27	16	28	1.97
668403--668460	30	1.9	31	85	3	82	20	5	13	60	1.53
671740--671799	25	2.2	28	80	14	72	66	5	3	25	1.27
671762--671808	21	2.2	21	85	7	60	70	4	2	23	1.16
672764--672828	31	2.1	31	88	0	94	20	26	16	36	1.93
679596--679861	100	2.7	100	87	5	360	34	16	16	31	1.92
681094--681252	36	4.4	36	87	4	124	27	21	12	38	1.90
681126--681305	36	5.0	36	89	2	272	26	21	13	39	1.90
681187--681248	21	3.2	21	63	25	55	29	20	11	38	1.88
681218--681402	101	1.8	102	84	5	259	26	18	14	40	1.90
681339--681472	36	3.7	36	80	6	153	22	17	17	42	1.89
681181--681442	137	1.9	137	83	6	343	27	19	14	39	1.90
681320--681477	73	2.2	72	86	2	219	25	18	15	41	1.89
681522--681608	33	2.7	33	89	3	124	37	18	14	28	1.91
690245--690292	15	3.4	14	77	11	53	56	0	0	43	0.99
690245--690292	14	3.4	15	80	11	57	56	0	0	43	0.99
690237--690292	28	2.0	29	85	3	78	58	0	0	41	0.98
690726--690932	21	10.0	21	74	13	169	21	20	22	35	1.96
690752--690932	42	4.4	40	94	1	272	22	20	22	35	1.96
690751--690932	84	2.2	82	95	2	319	21	20	21	35	1.96
691769--691966	42	4.8	41	84	9	255	36	21	20	21	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
691772--691939	61	2.7	62	86	5	248	36	22	20	20	1.95
691769--691958	61	3.1	61	83	7	235	35	21	20	22	1.96
691967--692014	21	2.3	21	92	0	78	18	18	31	31	1.95
694437--694512	36	2.1	36	97	0	143	31	10	14	43	1.79
694937--694966	15	2.0	15	100	0	60	13	26	46	13	1.80
699436--699511	36	2.1	36	97	0	143	31	10	14	43	1.79
702811--702882	24	3.0	24	79	0	90	54	16	11	18	1.71
704854--704886	17	1.9	17	93	0	57	39	18	24	18	1.92
705833--705879	24	2.0	24	91	0	76	36	23	6	34	1.80
707056--707154	24	4.1	24	76	0	90	48	15	15	21	1.81
707071--707164	24	3.9	23	72	5	62	46	14	17	21	1.83
728077--728611	291	1.8	293	88	2	824	30	13	16	39	1.87
737874--737943	18	3.9	18	67	14	54	42	25	22	8	1.82
737876--737950	36	2.1	36	82	0	87	44	26	21	8	1.80
737903--737970	27	2.5	27	85	0	100	41	23	25	10	1.86
739420--739459	20	2.0	20	100	0	80	30	0	35	35	1.58
741595--741643	18	2.6	18	80	9	53	24	12	20	42	1.86
744096--744139	21	2.2	20	83	4	52	63	0	4	31	1.14
746011--746078	3	22.0	3	82	5	73	58	0	0	41	0.98
753755--753793	2	19.5	2	94	0	69	2	48	0	48	1.15
753893--753940	3	16.0	3	95	0	87	31	0	2	66	1.03
756023--756119	50	1.9	50	97	0	185	30	28	10	29	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
759499--759595	50	1.9	50	91	4	160	31	28	9	29	1.88
761485--761525	20	2.0	21	85	4	57	41	2	2	53	1.27
765051--765194	3	47.7	3	97	1	261	33	31	0	34	1.58
765176--765734	185	3.0	185	98	1	1091	35	12	6	45	1.68
765173--765734	188	3.0	188	98	1	1103	35	12	6	45	1.68
769038--769090	26	2.0	26	100	0	106	33	15	18	32	1.92
780930--781052	58	2.1	58	85	4	169	39	19	21	18	1.92
780930--781049	29	4.2	29	78	9	129	39	19	22	19	1.93
783815--783850	18	1.9	19	88	5	56	72	0	22	5	1.05
783997--784070	31	2.4	31	83	0	94	28	25	10	35	1.90
789853--789916	24	2.7	24	80	0	74	23	9	17	50	1.75
793512--793558	21	2.2	21	92	0	76	63	0	21	14	1.30
793852--793901	6	8.7	6	91	8	86	68	0	0	32	0.90
793852--793901	11	4.3	12	90	10	86	68	0	0	32	0.90
793852--793900	17	2.9	17	100	0	98	67	0	0	32	0.91
817088--817126	20	1.9	20	84	5	51	33	5	23	38	1.77
826678--826720	21	2.0	21	81	0	50	16	37	25	20	1.93
829566--829622	30	1.9	30	96	0	105	35	5	12	47	1.64
829669--829708	21	1.9	21	89	0	62	30	10	10	50	1.69
829932--829974	21	2.0	21	81	0	50	18	32	25	23	1.97
835290--835344	24	2.3	24	96	3	103	49	20	25	5	1.70
835477--835538	31	2.0	31	100	0	124	32	3	29	35	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
845311--845370	3	19.7	3	93	3	102	31	0	0	68	0.90
846369--846407	19	2.1	19	90	4	62	38	5	0	56	1.22
846692--846801	35	3.1	35	88	1	148	24	21	19	34	1.96
853755--853842	29	3.0	29	96	0	158	23	12	11	52	1.71
856672--856732	22	2.5	26	70	26	69	19	16	8	55	1.65
856672--856740	25	2.9	24	75	20	72	20	14	7	57	1.60
861033--861118	18	4.6	18	74	17	61	74	0	9	16	1.06
861063--861110	10	4.6	10	80	10	60	77	0	6	16	0.97
861033--861110	16	4.7	15	78	12	57	75	0	8	15	1.03
861063--861110	22	2.3	20	89	7	69	77	0	6	16	0.97
861361--861388	2	14.0	2	100	0	56	50	0	0	50	1.00
861427--861462	2	18.5	2	94	5	65	50	0	0	50	1.00
861989--862093	37	2.8	37	84	2	140	29	16	15	39	1.89
862766--863716	106	9.0	106	86	3	1256	22	18	24	33	1.96
863717--863854	37	3.8	36	79	8	147	39	14	18	26	1.90
864151--864187	18	2.0	19	94	5	67	43	32	5	18	1.73
865210--865277	9	7.9	9	75	21	58	1	19	1	77	0.92
865207--865273	12	5.3	12	75	20	50	1	17	1	79	0.89
869626--869710	19	4.5	19	71	19	61	74	0	9	16	1.07
869655--869702	10	4.6	10	80	10	60	77	0	6	16	0.97
869636--869702	16	4.1	16	75	11	55	76	0	8	14	1.02
869655--869702	22	2.3	20	89	7	69	77	0	6	16	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
869799--869865	21	3.1	21	71	10	55	73	5	1	19	1.12
869798--869860	22	2.9	22	71	15	60	76	6	0	17	0.99
870547--870648	37	2.8	37	87	0	150	29	14	15	40	1.87
872702--872910	54	3.9	54	86	3	280	28	9	20	41	1.83
872700--872941	108	2.2	106	81	9	285	30	8	19	41	1.82
872697--872941	54	4.5	52	80	10	244	29	8	19	42	1.81
873057--873112	18	3.1	18	92	0	85	35	23	19	21	1.96
873832--873997	91	1.8	91	88	2	253	40	15	20	23	1.91
876149--876229	41	2.0	41	82	0	99	46	19	12	20	1.82
877607--877921	162	1.9	162	93	0	540	33	22	18	26	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22