genome.fa.s8645.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008645.1 Hibiscus syriacus cultivar Beakdansim tig00111621_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4138222

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   

This is table  2  of  22  ( 2605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
190530--190567	6	6.7	6	90	3	53	73	2	10	13	1.19
191616--191695	39	2.1	39	82	0	97	8	18	35	37	1.82
191727--191917	22	8.7	22	73	22	97	57	3	1	37	1.26
191807--191933	2	66.5	2	73	22	105	53	4	0	40	1.27
191733--191934	65	2.9	66	79	15	191	56	4	0	37	1.28
191733--191931	7	27.4	7	75	18	135	56	4	1	37	1.26
193525--193565	21	2.0	21	85	9	57	53	4	14	26	1.61
196542--196589	3	16.7	3	91	8	82	66	0	33	0	0.92
199434--199489	16	3.4	16	77	17	62	16	12	7	64	1.48
208833--208871	15	2.6	15	95	0	69	51	2	35	10	1.50
213062--213095	9	3.7	9	88	4	50	52	17	5	23	1.66
224182--224338	21	7.5	21	84	8	205	30	25	21	22	1.99
224202--224318	62	1.9	62	89	3	182	32	24	20	22	1.98
224182--224338	83	1.9	83	93	2	271	30	25	21	22	1.99
224477--224518	6	7.5	6	97	2	63	28	54	16	0	1.42
224481--224521	5	7.6	5	97	2	55	26	53	19	0	1.45
225028--225060	6	5.5	6	100	0	66	0	15	51	33	1.43
225146--225195	21	2.4	21	93	0	82	32	24	22	22	1.98
226882--226924	18	2.4	18	100	0	86	51	34	9	4	1.55
229710--229783	21	3.5	21	94	0	121	18	21	29	29	1.97
229695--229783	42	2.1	41	85	8	117	19	21	30	29	1.97
233209--233419	114	1.9	114	87	4	318	20	28	16	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
234211--234254	22	2.0	22	86	8	63	50	2	9	38	1.47
234904--234976	20	3.6	20	73	10	76	10	23	26	39	1.87
234877--235004	41	3.1	41	88	3	168	15	21	24	38	1.92
234880--235020	41	3.4	41	83	8	162	17	19	24	39	1.92
235165--235270	20	5.2	20	67	12	63	35	26	19	17	1.95
235172--235274	41	2.5	41	93	0	170	37	26	19	16	1.92
235172--235278	21	5.2	21	69	4	92	38	27	18	15	1.91
237180--237217	16	2.2	18	90	9	62	78	5	7	7	1.07
238981--239024	5	8.6	5	87	2	61	18	4	0	77	0.94
242497--242557	32	1.9	32	93	0	104	27	18	19	34	1.95
242566--242626	31	2.0	31	87	6	88	22	18	21	37	1.94
243949--243993	22	2.0	22	83	8	56	51	11	22	15	1.75
246746--246812	23	2.9	23	86	0	98	19	25	23	31	1.98
246936--246993	23	2.5	23	82	0	71	18	24	22	34	1.96
247680--247723	21	2.1	21	83	8	54	27	25	25	22	2.00
247747--247790	22	2.0	22	90	0	70	18	22	18	40	1.91
251817--252004	65	2.9	66	79	11	201	31	17	10	40	1.84
252573--252811	104	2.3	104	84	4	295	33	23	17	24	1.96
253153--253201	3	16.0	3	91	4	80	30	4	0	65	1.11
255062--255114	21	2.6	19	76	21	54	18	5	1	73	1.12
257790--257919	24	5.4	24	80	8	106	23	20	23	33	1.98
259111--259179	24	2.7	26	80	11	70	59	5	2	31	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
259246--259294	17	2.8	18	84	12	66	63	2	0	34	1.06
259246--259306	17	3.6	17	77	16	65	63	1	0	34	1.04
259243--259306	18	3.5	19	75	14	62	64	1	0	34	1.03
260298--260350	25	2.1	26	82	10	65	56	15	3	24	1.55
260507--260556	24	2.1	24	88	0	73	40	22	18	20	1.92
260539--260638	21	4.4	23	88	8	127	33	28	21	18	1.96
260539--260647	45	2.4	45	85	8	134	33	27	20	18	1.96
270287--270318	3	10.3	3	93	6	55	0	37	0	62	0.95
270847--270888	2	21.5	2	90	4	68	52	0	0	47	1.00
281775--281861	42	2.1	42	80	6	97	34	20	17	27	1.95
283855--283959	4	26.8	4	71	18	53	2	20	0	76	0.97
283862--283949	40	2.2	40	80	13	101	3	19	1	76	1.00
283859--283925	31	2.1	34	86	8	95	1	19	1	77	0.92
283900--283961	17	3.7	16	76	6	61	3	16	1	79	0.95
283859--283960	34	3.1	31	80	11	89	2	19	0	76	0.97
283854--283961	9	11.1	9	70	17	58	2	19	0	76	0.96
285493--285800	149	2.1	149	84	6	401	20	24	18	36	1.95
288831--288861	13	2.3	13	94	5	53	80	0	6	12	0.89
290859--291085	113	2.0	112	93	2	384	37	14	15	33	1.87
292381--292457	29	2.8	28	82	4	93	53	24	2	19	1.58
292381--292451	28	2.5	28	86	2	88	54	22	2	19	1.57
296990--297043	2	27.0	2	100	0	108	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
299368--299406	17	2.3	17	86	0	51	61	2	0	35	1.10
304096--304172	36	2.1	36	85	4	102	31	18	11	38	1.86
304810--304835	2	13.0	2	100	0	52	50	0	0	50	1.00
305515--305591	30	2.6	30	91	2	129	37	15	0	46	1.46
305593--305697	29	3.6	29	83	7	108	40	6	3	49	1.47
305733--305757	2	12.5	2	100	0	50	48	0	0	52	1.00
305801--305983	29	6.1	29	78	15	160	51	3	8	37	1.48
305838--305983	59	2.5	58	80	12	167	52	2	8	36	1.46
305946--306007	33	1.9	33	90	3	99	59	0	6	33	1.23
308638--308726	18	4.8	18	75	10	74	62	2	4	30	1.27
308722--308762	21	2.0	21	95	0	73	48	4	4	41	1.46
308700--308802	11	10.1	10	69	15	59	50	5	3	39	1.45
311158--311191	13	2.7	12	86	13	50	58	8	5	26	1.51
312871--312969	37	2.7	36	85	6	119	32	20	12	35	1.89
313250--313300	3	17.0	3	100	0	102	33	0	0	66	0.92
313678--313734	28	2.0	28	86	0	78	40	19	10	29	1.85
315424--315502	2	39.5	2	100	0	158	49	0	0	50	1.00
316174--316259	30	2.9	30	89	1	129	39	13	0	46	1.44
316254--316395	29	4.8	28	77	8	122	38	5	3	52	1.42
316424--316452	2	14.5	2	100	0	58	51	0	0	48	1.00
316485--316526	20	2.1	20	86	8	59	45	2	7	45	1.44
316544--316699	61	2.6	57	79	14	163	50	2	8	37	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
316544--316699	30	5.3	30	81	9	153	50	2	8	37	1.48
316584--316699	61	2.0	61	86	10	170	50	0	9	38	1.41
322905--322947	13	3.3	13	76	0	50	25	37	13	23	1.92
323681--323775	37	2.6	37	86	0	118	31	16	14	36	1.90
324057--324105	3	16.3	3	100	0	98	32	0	0	67	0.91
325249--325394	66	2.2	66	91	0	229	26	17	23	32	1.97
325273--325390	34	3.5	34	67	13	91	23	19	23	33	1.97
325368--325699	58	5.4	58	66	20	185	24	15	25	33	1.95
325302--325724	124	3.4	124	89	0	648	24	16	25	33	1.96
325629--325814	90	2.1	90	87	0	264	26	13	25	33	1.94
325865--325995	66	2.0	65	86	4	183	26	16	20	36	1.93
326009--326175	64	2.6	64	91	0	271	29	12	21	36	1.90
331199--331249	22	2.3	22	100	0	102	15	0	43	41	1.47
331294--331333	14	2.9	14	96	0	71	67	0	0	32	0.91
332420--332550	32	4.1	32	83	5	149	26	24	26	22	2.00
332431--332553	64	1.9	64	85	6	169	25	25	26	22	2.00
333556--333611	26	2.2	26	83	6	69	25	10	21	42	1.85
335054--335112	16	3.7	16	90	0	82	42	22	13	22	1.88
336257--336379	60	2.0	60	89	3	185	34	10	15	39	1.82
337131--337197	28	2.4	28	94	0	116	17	26	29	25	1.98
338601--338635	7	5.0	7	86	13	54	40	0	0	60	0.97
339389--339437	23	2.1	23	92	0	80	32	2	12	53	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
342818--342850	12	2.7	13	81	18	52	0	63	12	24	1.28
343254--343283	2	15.5	2	93	6	53	50	0	0	50	1.00
344987--345024	17	2.2	17	90	9	60	21	42	23	13	1.88
345133--345213	29	2.9	29	81	7	87	34	3	17	44	1.66
345147--345213	29	2.3	29	89	0	98	29	4	19	46	1.69
345943--345975	15	2.2	15	89	10	50	21	18	12	48	1.80
346432--346465	18	1.9	18	88	5	52	20	0	14	64	1.28
347340--347409	28	2.5	29	90	6	117	40	17	7	35	1.77
347954--347996	12	3.6	12	77	0	50	37	2	4	55	1.33
349268--349316	16	3.1	16	80	16	57	28	6	0	65	1.16

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22