genome.fa.s8645.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008645.1 Hibiscus syriacus cultivar Beakdansim tig00111621_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4138222

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   

This is table  6  of  22  ( 2605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1073543--1073644	43	2.4	43	91	0	159	29	32	11	26	1.92
1073712--1073830	36	3.3	36	83	3	159	35	13	22	28	1.92
1073827--1073944	36	3.3	36	84	0	155	39	14	23	22	1.90
1073769--1073890	57	2.1	57	83	3	156	39	12	22	25	1.89
1073725--1074013	93	3.2	91	79	8	304	38	13	23	24	1.91
1073919--1073959	15	2.7	15	96	0	73	31	19	31	17	1.95
1073883--1073995	51	2.2	51	85	0	145	37	15	25	22	1.93
1073947--1074038	36	2.6	36	94	0	157	38	11	22	27	1.89
1073860--1074031	87	2.0	87	88	0	254	36	13	24	25	1.92
1073949--1074013	21	3.4	21	64	24	61	38	10	24	26	1.88
1074363--1074461	34	2.9	34	89	0	126	33	11	18	37	1.86
1074558--1074724	32	5.2	32	85	2	210	32	23	13	31	1.93
1074558--1074717	65	2.5	64	88	2	221	33	22	12	31	1.91
1075733--1075778	17	2.8	16	84	12	65	6	13	4	76	1.14
1075746--1075789	21	2.0	22	86	4	63	6	18	4	70	1.27
1075746--1075803	21	2.6	21	81	10	62	10	13	3	72	1.24
1080008--1080046	17	2.3	17	86	8	53	35	30	5	28	1.79
1083643--1083711	3	23.0	3	85	5	95	60	2	1	34	1.20
1085069--1085179	57	1.9	57	82	7	136	34	23	6	36	1.80
1085293--1085473	60	3.0	60	78	4	179	39	5	22	32	1.77
1087349--1087388	16	2.6	16	92	4	64	40	7	17	35	1.78
1087440--1087532	27	3.4	27	95	0	168	26	19	16	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1089367--1089418	20	2.6	19	79	8	59	65	1	0	32	1.04
1089275--1089504	120	1.9	119	82	4	284	46	7	6	39	1.59
1089603--1089704	3	35.0	3	72	16	81	65	0	2	30	1.14
1089605--1089646	22	1.9	22	95	0	75	69	0	4	26	1.08
1089666--1089743	21	3.5	22	69	20	63	64	1	2	32	1.15
1089869--1089937	2	34.5	2	100	0	138	50	0	0	49	1.00
1090934--1091013	3	26.0	3	85	9	92	60	0	0	40	0.97
1090934--1091021	12	7.2	13	82	17	102	61	0	0	38	0.96
1091261--1091319	17	3.4	17	68	25	50	18	23	8	49	1.75
1091261--1091355	40	2.5	38	86	8	140	18	23	9	48	1.77
1091246--1091622	155	2.5	154	93	4	642	26	21	12	39	1.88
1091410--1091508	40	2.4	42	89	3	157	18	22	9	50	1.74
1091451--1092193	113	6.5	112	88	3	1045	27	18	13	40	1.88
1091452--1092193	344	2.2	339	88	2	1117	27	18	13	40	1.88
1092135--1092236	40	2.5	40	93	1	177	17	22	8	50	1.73
1092021--1092351	153	2.2	154	95	0	592	24	18	12	44	1.85
1092175--1092383	113	1.8	113	94	0	373	25	17	14	42	1.87
1092783--1092837	22	2.5	22	87	0	83	36	14	14	34	1.87
1094231--1094425	76	2.6	76	95	1	347	28	17	16	37	1.91
1097804--1097893	12	7.6	12	92	6	148	0	17	0	82	0.68
1097802--1097885	1	84.0	1	68	0	51	0	15	0	84	0.62
1097875--1097926	26	2.0	27	92	3	88	3	17	11	67	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1103589--1103640	20	2.6	19	79	8	59	65	1	0	32	1.04
1103497--1103726	120	1.9	119	82	6	286	47	7	6	38	1.58
1103801--1103830	2	15.0	2	92	0	51	46	0	0	53	1.00
1103831--1103929	3	34.0	3	69	17	66	66	1	3	29	1.13
1103830--1103937	39	2.7	39	76	16	103	67	1	2	27	1.15
1103831--1103938	13	8.2	12	71	21	74	67	1	2	27	1.15
1103881--1103968	39	2.2	40	82	9	101	65	1	2	30	1.12
1104093--1104124	2	16.0	2	100	0	64	50	0	0	50	1.00
1105131--1105190	3	20.0	3	89	6	95	63	0	0	36	0.95
1105655--1105704	21	2.3	22	83	13	68	52	0	0	48	1.00
1106005--1106050	24	1.9	24	86	0	65	47	2	0	50	1.13
1106267--1106338	6	12.0	6	93	0	126	52	0	47	0	1.00
1106804--1106860	28	2.0	28	89	0	87	36	19	10	33	1.86
1107405--1107446	2	21.5	2	90	4	68	2	45	0	52	1.13
1107404--1107461	10	6.4	9	83	15	59	1	41	0	56	1.09
1110493--1110537	18	2.5	18	100	0	90	33	4	53	8	1.52
1110477--1110501	3	8.3	3	100	0	50	32	0	68	0	0.90
1118553--1118603	21	2.4	21	93	0	84	31	15	13	39	1.87
1119111--1119243	21	6.4	21	85	1	142	32	20	23	24	1.98
1119111--1119243	62	2.1	63	84	4	171	32	20	23	24	1.98
1125731--1125797	13	5.4	13	80	10	77	17	49	16	16	1.80
1125744--1125789	23	2.0	23	86	0	65	19	50	17	13	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1125721--1125797	36	2.1	36	87	0	109	19	50	15	14	1.78
1128278--1128341	24	2.7	24	92	0	101	21	20	21	35	1.96
1130492--1130547	13	4.3	13	88	0	76	17	39	23	19	1.92
1133050--1133137	24	3.7	24	90	0	131	23	20	20	35	1.96
1137110--1137135	8	3.2	8	100	0	52	61	0	0	38	0.96
1137129--1137172	16	2.8	15	86	6	52	36	4	0	59	1.18
1144840--1144864	2	12.5	2	100	0	50	52	0	0	48	1.00
1146123--1146163	21	2.0	21	100	0	82	39	9	19	31	1.84
1146264--1146402	65	2.1	65	93	0	242	18	17	27	35	1.94
1147066--1147250	20	9.3	19	70	14	106	47	2	5	44	1.38
1147066--1147225	2	81.5	2	71	15	102	47	1	5	45	1.34
1147320--1147352	9	3.8	9	88	8	50	54	3	6	36	1.41
1147338--1147391	21	2.6	19	78	21	56	48	3	1	46	1.30
1147346--1147410	32	2.1	31	82	2	76	47	4	0	47	1.22
1147393--1147495	15	7.3	13	70	17	55	46	5	4	42	1.49
1147352--1147432	18	4.4	18	77	17	69	45	6	1	46	1.35
1147322--1147438	38	3.1	38	70	22	93	47	5	2	44	1.38
1147416--1147483	28	2.5	26	85	4	91	47	4	5	42	1.48
1147393--1147490	28	3.4	28	78	13	85	46	5	5	42	1.47
1147466--1147644	99	1.8	99	93	0	313	45	2	7	44	1.45
1148054--1148089	16	2.2	16	95	0	63	44	2	5	47	1.41
1148127--1148200	37	2.1	36	84	5	96	41	8	10	39	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1148186--1148225	20	2.0	20	90	0	62	45	5	10	40	1.60
1148207--1148240	13	2.5	13	90	4	50	47	8	2	41	1.50
1148236--1148274	17	2.3	17	86	0	51	46	2	5	46	1.38
1148238--1148409	59	2.8	60	87	7	240	41	7	5	44	1.57
1148403--1148508	57	2.0	51	82	12	124	37	6	8	47	1.60
1148440--1148487	21	2.3	21	85	0	60	39	6	6	47	1.54
1148498--1148548	15	3.3	15	71	15	50	41	3	3	50	1.39
1148527--1148658	35	3.9	35	76	13	141	43	3	8	44	1.52
1148623--1148666	18	2.6	17	86	13	56	45	0	6	47	1.29
1148611--1148681	24	2.9	24	79	14	74	45	2	5	46	1.41
1148758--1148880	6	21.2	6	66	24	52	47	2	1	48	1.24
1148742--1148802	31	2.0	31	84	6	81	40	1	3	54	1.27
1148788--1148885	50	1.9	52	84	12	132	51	2	1	45	1.19
1148840--1148872	11	2.8	12	86	9	50	48	0	0	51	1.00
1148789--1148910	50	2.4	50	77	14	117	50	1	1	46	1.21
1149675--1149731	24	2.4	24	85	2	80	45	35	7	12	1.69
1153539--1153593	16	3.4	16	80	5	67	32	20	20	27	1.97
1153522--1153603	32	2.6	32	83	12	114	36	17	19	26	1.94
1153531--1153603	16	4.6	16	74	6	60	38	17	19	24	1.93
1158144--1158913	76	10.1	76	96	0	1396	34	22	19	23	1.96
1159592--1159645	22	2.5	21	90	3	90	40	14	11	33	1.82
1162144--1162363	114	1.9	114	93	0	377	30	20	15	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1171073--1171130	3	19.7	3	86	10	75	62	1	0	36	1.06
1171230--1171475	42	5.5	42	75	14	204	28	19	7	45	1.76
1171212--1171564	92	3.8	92	87	2	469	27	19	7	45	1.76
1171253--1171511	50	5.5	49	77	14	285	27	20	7	44	1.79
1171486--1171583	44	2.2	44	82	7	110	24	19	5	51	1.67
1171592--1171667	40	1.9	39	86	2	107	28	18	1	51	1.54
1181813--1181860	20	2.5	20	78	21	57	45	8	8	37	1.64
1182955--1183009	28	2.0	28	89	7	85	74	9	7	9	1.22
1183067--1183091	13	1.9	13	100	0	50	80	0	0	20	0.72
1184963--1185999	84	12.4	84	82	3	1101	24	18	23	33	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22