genome.fa.s8645.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008645.1 Hibiscus syriacus cultivar Beakdansim tig00111621_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4138222

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   

This is table  3  of  22  ( 2605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
349271--349320	17	3.1	16	81	16	59	28	6	0	66	1.15
349294--349364	20	3.2	23	73	20	62	29	4	1	64	1.20
359246--359301	22	2.5	23	88	5	87	33	10	14	41	1.80
359960--360371	46	8.9	46	91	2	614	24	23	18	33	1.97
359960--360371	91	4.5	92	91	2	623	24	23	18	33	1.97
360324--360501	74	2.4	74	91	0	295	25	19	21	32	1.97
360677--360730	3	18.0	3	88	0	81	35	1	1	61	1.18
362423--362466	23	1.9	23	90	0	70	50	4	0	45	1.22
365154--365183	2	15.0	2	100	0	60	50	0	0	50	1.00
366700--366737	2	19.0	2	100	0	76	50	0	0	50	1.00
369609--369742	67	2.0	67	91	2	216	37	8	25	29	1.85
378682--378860	60	3.0	60	80	1	207	31	21	5	41	1.76
378989--379163	60	2.9	60	81	8	205	41	2	20	35	1.67
379903--379995	21	4.5	21	78	4	100	39	18	24	17	1.91
379903--379995	41	2.3	41	100	0	186	39	18	24	17	1.91
379981--380078	41	2.4	41	84	0	133	38	21	16	23	1.92
380246--380289	22	2.0	22	90	0	70	22	45	15	15	1.85
380533--380576	20	2.2	20	87	0	61	11	18	20	50	1.77
381896--381940	18	2.5	18	88	0	72	26	44	15	13	1.83
382422--382488	20	3.4	20	81	2	73	38	23	22	14	1.92
382477--382534	14	3.9	14	79	16	71	48	24	17	10	1.78
382461--382551	32	2.8	33	94	3	166	47	21	18	12	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
382568--382625	14	3.9	14	79	16	71	8	17	25	48	1.75
382563--382641	32	2.4	33	93	2	133	10	17	24	48	1.78
382626--382680	19	2.8	19	86	5	65	16	23	23	36	1.94
382635--382680	20	2.4	19	92	3	74	15	23	26	34	1.94
384550--384585	14	2.6	14	90	0	54	30	0	22	47	1.52
384702--384769	19	3.8	19	85	14	101	47	17	22	13	1.82
384788--384845	20	2.9	20	94	0	98	17	22	22	37	1.93
385902--385955	24	2.2	24	90	0	81	24	16	20	38	1.92
386130--386154	12	2.1	12	100	0	50	72	0	28	0	0.86
388446--388510	19	3.7	19	70	19	68	43	20	24	12	1.86
388446--388508	33	1.9	33	96	0	117	41	20	25	12	1.88
388506--388551	21	2.3	21	78	10	53	17	17	19	45	1.85
388690--388726	14	2.6	14	91	0	65	45	24	0	29	1.53
390084--390150	21	3.2	21	68	4	55	19	20	35	23	1.95
390084--390206	42	2.9	41	79	7	113	22	18	36	21	1.95
392241--392277	14	2.6	14	91	0	56	40	21	27	10	1.86
392217--392310	47	2.0	48	87	2	136	38	24	25	11	1.89
392301--392371	19	3.7	19	90	3	115	46	22	19	11	1.81
392254--392366	33	3.2	33	81	7	109	44	24	20	10	1.83
392192--392371	20	10.1	19	74	17	120	43	21	22	12	1.86
392367--392433	19	3.5	19	83	2	89	8	16	23	50	1.73
392947--392999	20	2.7	20	90	0	79	28	20	26	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
393008--393061	20	2.7	20	97	0	99	25	18	24	31	1.97
392948--393082	61	2.2	61	80	2	146	23	20	23	32	1.98
393132--393172	21	2.0	21	85	0	55	34	31	17	17	1.93
396271--396301	14	2.3	13	94	5	53	16	0	3	80	0.83
397558--397944	179	2.2	180	80	4	426	40	8	11	39	1.72
398430--398586	66	2.4	66	100	0	314	46	7	6	39	1.58
407271--407359	32	2.8	31	75	8	88	53	8	3	33	1.49
408288--408373	42	2.0	42	84	0	109	18	10	40	30	1.84
410191--410232	21	2.0	22	86	13	61	21	2	21	54	1.56
410577--410621	20	2.2	20	92	0	81	40	26	11	22	1.87
410940--411006	35	1.9	35	87	6	100	28	0	19	52	1.46
410980--411034	21	2.6	21	74	8	58	36	0	18	45	1.49
411241--411318	29	2.6	30	77	4	95	17	0	20	61	1.34
411509--411619	7	15.7	7	74	1	60	23	0	24	51	1.54
411553--411613	21	2.9	21	80	0	68	22	0	22	54	1.45
411580--411661	21	3.9	21	72	4	58	23	0	20	56	1.43
411623--411661	14	2.8	14	88	0	51	23	0	20	56	1.42
421906--421953	25	2.0	24	83	4	60	18	4	12	64	1.43
424829--424886	25	2.4	24	83	11	66	46	3	18	31	1.66
424989--425031	22	2.0	22	85	0	59	25	16	27	30	1.97
427119--427265	43	3.4	42	71	14	127	37	18	21	23	1.94
427492--427533	11	3.9	11	81	3	50	42	0	2	54	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
427564--427613	25	2.0	26	84	4	66	32	32	12	24	1.91
428616--428692	2	39.0	2	97	2	147	50	0	0	49	1.00
436522--436603	43	1.9	43	84	0	110	36	21	14	26	1.93
443565--443594	14	2.1	14	93	0	51	40	26	13	20	1.89
445200--445314	57	2.0	58	96	1	214	46	17	11	25	1.81
460065--460093	14	2.1	14	100	0	58	0	24	55	20	1.44
467359--467393	9	3.7	9	85	14	52	31	31	22	14	1.94
467349--467394	9	4.7	10	79	15	51	28	28	23	19	1.98
473167--473197	2	15.5	2	100	0	62	48	0	0	51	1.00
478860--478897	2	19.0	2	100	0	76	50	0	0	50	1.00
490126--490178	24	2.2	25	93	3	90	15	16	22	45	1.85
490397--490451	28	2.0	28	96	0	101	27	0	16	56	1.40
506689--506721	17	1.9	17	93	0	57	30	0	3	66	1.06
510555--510597	12	3.8	12	84	12	54	18	13	18	48	1.80
511347--511393	19	2.7	17	79	20	53	36	4	12	46	1.62
514792--514825	17	1.9	18	94	5	61	32	2	0	64	1.08
526871--526961	48	1.9	47	88	2	137	43	14	24	17	1.86
527739--528711	106	9.2	106	91	1	1436	34	26	17	21	1.96
540157--540243	35	2.5	34	80	12	97	54	10	8	27	1.62
541428--541503	2	38.0	2	100	0	152	50	0	0	50	1.00
541881--541921	19	2.2	19	100	0	82	19	39	26	14	1.90
546937--546974	2	19.0	2	100	0	76	0	50	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
547235--547266	13	2.5	13	94	0	55	15	0	31	53	1.43
548548--548576	6	4.8	6	100	0	58	0	65	0	34	0.93
548758--548825	32	2.1	33	83	8	86	30	1	5	61	1.28
549504--549536	16	2.1	16	88	11	50	54	6	3	36	1.41
551446--551497	22	2.4	22	80	6	61	38	5	0	55	1.24
553844--553884	18	2.3	18	82	0	55	53	4	17	24	1.63
555844--555935	31	3.0	31	93	3	150	38	22	19	19	1.94
560243--560334	31	3.0	31	93	3	150	38	22	19	19	1.94
565704--565744	18	2.3	18	86	0	55	53	2	17	26	1.56
568588--568626	15	2.5	15	88	12	53	61	2	2	33	1.23
578668--578720	22	2.6	19	77	14	52	32	1	1	64	1.15
583067--583105	15	2.7	14	84	7	51	20	10	28	41	1.85
584905--584969	5	13.2	5	71	9	53	43	0	1	55	1.09
588442--588481	19	2.1	19	90	4	62	35	7	17	40	1.78
589134--589227	31	3.0	31	89	3	136	34	22	19	24	1.97
594775--594809	17	2.1	17	88	0	52	48	14	2	34	1.58
598287--598343	22	2.6	22	88	0	69	26	26	22	24	2.00
598323--598419	31	3.1	31	88	2	149	32	24	18	23	1.97
598609--598653	18	2.4	19	85	7	56	44	26	0	28	1.55
599681--599735	21	2.6	21	79	0	65	29	27	16	27	1.97
602181--602551	59	6.3	59	85	3	406	32	5	17	45	1.71
602181--602487	117	2.6	117	84	3	377	32	5	17	44	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
602430--602534	30	3.5	30	64	10	79	28	7	19	44	1.77
606512--606938	59	7.3	59	90	2	540	32	6	17	43	1.75
606762--606912	29	5.2	29	62	11	76	31	8	14	45	1.75
607791--607865	32	2.4	31	77	4	78	14	18	32	34	1.91
608565--608591	13	2.1	13	100	0	54	7	33	14	44	1.73
610597--610638	19	2.2	19	86	0	57	40	2	2	54	1.26
614116--614184	32	2.2	32	100	0	138	60	2	4	31	1.31
614499--614527	3	9.7	3	100	0	58	0	0	31	68	0.89
618174--618332	64	2.5	64	87	4	214	28	15	23	32	1.95
626164--626219	17	3.3	17	97	0	103	14	23	46	16	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22