genome.fa.s8645.2.7.7.80.10.50.1000.16.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008645.1 Hibiscus syriacus cultivar Beakdansim tig00111621_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4138222

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   

This is table  16  of  22  ( 2605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3007141--3007214	12	6.2	12	87	0	85	36	6	32	24	1.82
3008407--3008440	16	2.1	16	94	0	59	47	5	20	26	1.73
3008801--3008873	23	3.2	23	84	0	92	35	4	20	39	1.72
3009253--3009745	183	2.7	183	95	1	864	34	15	17	33	1.91
3012210--3012274	25	2.6	25	97	0	121	40	10	12	36	1.78
3012621--3012693	23	3.2	23	90	0	101	34	4	20	41	1.72
3013056--3013122	23	2.9	23	88	0	98	32	4	22	40	1.74
3013126--3013165	21	1.9	21	84	0	53	30	10	7	52	1.62
3012418--3013717	430	3.0	430	96	0	2390	40	7	12	39	1.71
3013481--3013552	23	3.2	23	90	2	110	33	5	22	38	1.77
3014916--3015010	20	4.7	20	74	10	68	38	23	17	20	1.93
3014855--3015010	61	2.5	62	76	6	149	37	25	17	19	1.94
3014958--3015167	20	10.5	20	79	6	192	37	25	17	20	1.93
3015850--3015896	24	2.0	24	87	8	69	25	14	21	38	1.92
3016071--3016095	12	2.1	12	100	0	50	72	0	28	0	0.86
3018378--3018613	19	13.4	19	78	17	278	47	17	20	13	1.82
3018406--3018580	52	3.2	52	92	4	269	47	16	21	14	1.82
3018378--3018635	33	7.5	35	84	11	272	46	17	21	13	1.83
3018378--3018613	52	4.5	55	85	11	238	47	17	20	13	1.82
3018573--3018627	14	3.6	14	76	21	56	47	20	21	10	1.80
3018642--3018743	19	5.6	19	85	12	151	14	23	17	44	1.86
3018850--3018886	14	2.6	14	91	0	65	45	21	0	32	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3020864--3020920	14	3.7	14	77	20	60	45	22	21	10	1.82
3020845--3020937	33	2.8	33	95	0	168	47	21	20	10	1.80
3020808--3020942	19	7.6	19	76	16	128	45	23	19	11	1.82
3020938--3021050	19	6.5	19	74	19	120	7	17	28	46	1.74
3020938--3021029	33	2.8	33	93	3	150	7	18	28	45	1.76
3020968--3021066	19	5.4	18	76	12	80	9	18	27	45	1.79
3021114--3021489	93	4.1	93	98	0	718	46	18	12	22	1.83
3023188--3023277	33	2.5	33	85	10	117	43	21	24	11	1.85
3023190--3023251	20	3.2	20	79	4	81	43	19	24	12	1.86
3023188--3023299	19	6.1	19	77	12	108	44	20	23	11	1.84
3023295--3023385	19	4.7	19	84	2	110	10	20	23	45	1.83
3023477--3023546	33	2.1	33	94	0	122	47	17	24	11	1.80
3023729--3023783	22	2.5	22	81	0	74	20	16	40	23	1.91
3023930--3024123	20	9.6	20	78	5	194	19	19	24	36	1.95
3023932--3024103	60	2.8	60	83	0	227	20	19	25	35	1.95
3023929--3024244	60	5.2	60	77	8	225	20	18	25	36	1.95
3024090--3024187	20	4.8	20	77	3	79	21	18	23	36	1.95
3024090--3024246	61	2.6	60	80	7	176	19	16	25	38	1.92
3024090--3024246	41	3.9	41	70	14	110	19	16	25	38	1.92
3025628--3025703	6	12.7	6	74	0	53	14	15	36	32	1.88
3025651--3025698	18	2.7	18	90	0	69	12	16	39	31	1.86
3025627--3025686	24	2.5	24	83	0	84	18	16	35	30	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3028842--3029010	66	2.5	69	92	2	281	37	15	24	22	1.93
3029011--3029057	21	2.2	21	100	0	94	61	0	21	17	1.34
3029686--3029771	36	2.4	37	82	5	104	40	1	1	56	1.14
3034728--3034880	37	4.1	37	91	0	234	24	16	21	37	1.93
3035422--3035699	37	7.4	37	75	11	260	23	18	22	35	1.95
3035422--3035699	74	3.7	74	76	9	301	23	18	22	35	1.95
3035386--3035742	153	2.3	153	92	2	594	23	19	23	33	1.97
3035707--3035798	42	2.2	42	84	3	123	31	20	22	25	1.98
3038430--3038462	2	16.5	2	100	0	66	51	0	0	48	1.00
3053605--3053657	20	2.6	21	82	8	65	37	7	3	50	1.49
3053999--3054285	108	2.6	108	81	6	303	36	11	10	42	1.75
3054157--3054733	225	2.6	225	82	3	703	32	12	12	41	1.82
3054534--3055368	417	2.0	419	88	3	1257	34	12	11	41	1.80
3055887--3055990	33	3.1	32	82	6	100	34	0	3	61	1.14
3055931--3055987	18	3.3	18	73	14	57	43	0	1	54	1.10
3056135--3056188	17	3.2	17	72	0	54	31	0	3	64	1.11
3057770--3057836	21	3.2	21	93	0	116	17	34	26	20	1.96
3057770--3057855	21	4.1	21	89	3	111	18	34	24	22	1.96
3058386--3058482	33	2.9	34	85	3	133	55	4	3	37	1.35
3058384--3058489	34	3.2	33	82	8	133	54	4	2	37	1.36
3058882--3059638	128	5.9	128	92	1	1250	32	19	24	23	1.98
3058882--3059638	384	2.0	384	97	0	1435	32	19	24	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3059709--3059749	8	5.2	8	88	5	66	36	26	0	36	1.57
3059709--3059749	15	2.6	16	84	7	57	36	26	0	36	1.57
3065469--3065625	73	2.2	73	96	0	287	33	7	14	43	1.74
3065558--3065590	16	2.1	16	94	0	57	33	0	0	66	0.92
3065870--3065937	30	2.2	31	86	2	93	48	8	0	42	1.34
3066182--3066252	29	2.4	29	84	6	99	26	2	2	67	1.18
3066329--3066396	31	2.2	32	84	12	97	44	2	1	51	1.25
3066515--3066616	31	3.3	31	90	2	134	54	1	3	39	1.30
3066538--3066637	31	3.2	31	88	2	103	59	2	2	37	1.21
3066546--3066640	30	3.2	28	80	11	73	60	2	1	36	1.16
3068111--3068680	303	1.9	304	89	2	887	33	14	16	35	1.89
3078384--3078458	36	2.1	38	87	7	111	36	1	24	38	1.64
3081412--3081454	20	2.2	20	86	0	59	55	6	11	25	1.60
3084523--3084558	2	18.0	2	100	0	72	50	0	0	50	1.00
3087597--3087699	41	2.5	41	93	0	170	16	25	15	42	1.87
3088673--3088752	40	2.0	40	95	0	142	45	17	12	25	1.83
3101185--3101222	20	1.9	20	88	0	58	21	26	10	42	1.85
3102948--3102996	22	2.2	22	85	7	64	61	18	2	18	1.45
3102960--3103008	21	2.3	22	80	16	59	67	10	0	22	1.20
3103570--3103803	127	1.8	128	89	2	373	41	11	11	35	1.78
3104147--3104174	2	14.0	2	100	0	56	50	0	0	50	1.00
3106825--3106987	85	1.9	85	81	2	193	43	12	9	34	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3107558--3107850	134	2.2	134	85	4	398	33	18	16	31	1.93
3109295--3109401	34	3.5	31	75	15	98	42	5	5	45	1.51
3109295--3109403	29	3.6	29	76	12	103	42	5	5	46	1.50
3109687--3109720	10	3.4	10	83	0	50	26	2	44	26	1.69
3114153--3114203	23	2.3	23	83	10	61	43	1	1	52	1.23
3114396--3114457	29	2.2	29	83	11	76	41	1	1	54	1.19
3114382--3114437	24	2.3	24	75	0	58	41	1	0	57	1.09
3116323--3116365	17	2.5	17	92	0	77	18	30	25	25	1.98
3116502--3116543	19	2.2	19	100	0	84	45	4	21	28	1.72
3117240--3117300	22	2.8	22	92	5	97	26	22	26	24	2.00
3125176--3125248	12	6.2	12	67	12	53	50	1	2	45	1.24
3125180--3125229	23	2.3	22	82	6	57	54	0	2	44	1.11
3125179--3125222	23	1.9	23	90	0	70	54	0	0	45	0.99
3130848--3130892	21	2.1	21	87	0	63	31	28	24	15	1.96
3131705--3131802	31	3.2	31	71	16	96	27	19	20	32	1.97
3131792--3131860	29	2.4	29	92	4	113	24	21	21	31	1.98
3131878--3131974	32	3.1	32	78	11	110	27	17	19	35	1.94
3131877--3131977	31	3.2	31	79	10	116	27	18	19	33	1.96
3131693--3132043	175	2.0	175	96	3	654	25	19	23	30	1.98
3131965--3132058	30	3.1	30	90	3	136	20	21	27	30	1.98
3134936--3134979	21	2.2	20	84	12	54	34	25	25	15	1.95
3135800--3135896	32	3.1	32	78	11	110	27	17	19	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3135799--3135899	31	3.2	31	79	10	116	27	18	19	33	1.96
3135887--3135980	30	3.1	30	90	3	136	20	21	27	30	1.98
3138504--3138557	21	2.6	21	84	0	72	29	25	22	22	1.99
3140357--3140420	22	2.9	22	83	0	74	43	15	20	20	1.87
3140490--3140530	20	2.0	20	100	0	82	56	9	0	34	1.32
3140998--3141253	117	2.2	116	80	6	302	31	23	8	36	1.86
3143151--3143187	16	2.2	17	90	4	58	70	0	29	0	0.88
3146691--3146737	18	2.7	18	86	3	60	34	8	27	29	1.87
3147207--3147320	51	2.2	51	96	0	210	44	3	12	39	1.59
3147355--3147436	37	2.2	38	89	8	132	37	37	12	12	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22