genome.fa.s8645.2.7.7.80.10.50.1000.22.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008645.1 Hibiscus syriacus cultivar Beakdansim tig00111621_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4138222

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   

This is table  22  of  22  ( 2605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4030444--4030496	23	2.5	21	77	14	63	43	0	1	54	1.11
4030452--4030496	23	2.0	23	90	0	72	44	0	2	53	1.13
4030454--4030526	23	3.1	23	80	11	60	43	0	2	53	1.15
4035260--4035304	22	2.0	22	100	0	90	46	13	8	31	1.74
4036140--4036196	22	2.6	22	94	0	96	31	7	33	28	1.84
4039606--4039668	31	2.0	31	96	0	117	53	14	6	25	1.64
4040372--4040424	21	2.5	21	84	0	70	20	26	18	33	1.96
4041302--4041347	24	1.9	24	95	0	83	23	21	21	32	1.98
4041301--4041354	24	2.2	24	86	0	81	22	18	20	38	1.93
4043916--4043998	20	4.2	20	80	7	89	48	16	18	16	1.82
4043964--4044057	33	2.8	33	93	0	152	45	18	23	12	1.83
4043904--4044061	19	8.7	19	71	15	102	45	18	21	14	1.85
4044050--4044092	19	2.3	19	79	0	50	18	20	23	37	1.94
4044057--4044119	19	3.3	19	91	4	92	15	17	22	44	1.86
4044067--4044151	19	4.7	19	77	16	92	12	20	20	47	1.82
4044258--4044294	14	2.6	14	91	0	65	45	21	0	32	1.52
4045646--4045739	42	2.2	42	83	3	109	23	21	32	22	1.98
4045676--4045764	42	2.1	42	81	4	99	25	16	35	21	1.94
4047643--4047722	33	2.4	33	85	0	97	15	16	22	46	1.84
4047706--4047777	20	3.5	20	86	5	101	13	16	18	51	1.77
4048333--4048567	20	11.6	20	75	6	170	18	16	24	40	1.90
4048382--4048567	40	4.6	41	87	1	250	18	16	23	40	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4048457--4048590	61	2.2	61	81	5	146	20	18	24	36	1.95
4048332--4048628	142	2.1	142	82	7	363	18	16	23	40	1.90
4048579--4048628	20	2.5	20	90	6	75	14	18	24	44	1.86
4048596--4048689	42	2.3	42	76	9	95	21	21	22	35	1.96
4048678--4048731	20	2.7	19	75	8	63	16	18	31	33	1.93
4049263--4049315	21	2.5	21	87	0	79	20	24	18	35	1.95
4049305--4049377	20	3.7	20	98	0	137	38	21	20	19	1.94
4049364--4049430	20	3.3	20	91	0	107	31	28	17	22	1.97
4050272--4050326	24	2.3	24	87	0	83	23	16	20	40	1.91
4052770--4052823	20	2.7	20	85	0	63	37	22	18	22	1.95
4052824--4052889	33	2.0	34	93	3	116	48	15	24	12	1.78
4054459--4054509	21	2.4	22	80	9	61	21	15	39	23	1.92
4054427--4054536	42	2.6	42	80	5	107	23	17	36	22	1.95
4055018--4055106	20	4.4	20	89	0	124	39	23	17	19	1.92
4055136--4055180	20	2.2	20	96	0	81	20	17	22	40	1.92
4057067--4057156	20	4.6	20	85	1	101	45	23	16	14	1.84
4057494--4057567	22	3.4	22	88	0	103	22	14	36	25	1.93
4057756--4057864	20	5.4	20	92	0	182	21	19	18	41	1.91
4057867--4057910	21	2.1	21	91	0	70	43	15	25	15	1.87
4058397--4058508	29	3.9	28	74	6	98	38	6	2	52	1.41
4058444--4058526	29	2.9	29	83	7	98	33	9	3	53	1.51
4058705--4058731	2	13.5	2	100	0	54	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4058582--4058723	69	2.1	69	80	5	153	51	0	7	40	1.34
4058750--4058834	28	2.9	27	74	19	80	60	2	7	30	1.36
4059194--4059219	6	4.3	6	100	0	52	69	0	0	30	0.89
4066326--4066372	14	3.5	14	77	11	62	42	10	6	40	1.65
4066318--4066382	26	2.5	26	97	0	121	40	12	7	40	1.71
4066340--4066382	12	3.4	12	75	12	50	41	13	6	37	1.72
4066417--4066446	2	15.0	2	100	0	60	50	0	0	50	1.00
4067570--4067618	25	2.0	25	92	4	82	38	10	26	24	1.87
4079020--4079099	21	3.8	21	93	3	126	47	25	5	22	1.71
4080167--4080421	41	6.2	41	80	2	235	34	17	20	27	1.95
4080162--4080369	82	2.5	83	84	2	267	34	15	20	28	1.94
4080110--4080377	123	2.2	124	81	5	301	33	16	20	28	1.95
4080167--4080421	123	2.1	124	80	5	284	34	17	20	27	1.95
4081111--4081194	42	2.0	42	83	0	105	22	41	15	20	1.89
4088544--4088596	10	5.8	9	83	14	56	49	1	0	49	1.12
4088567--4088596	2	15.5	2	93	6	53	50	0	0	50	1.00
4090237--4090273	2	18.5	2	100	0	74	48	0	0	51	1.00
4092476--4092525	23	2.2	23	82	7	57	18	4	8	70	1.28
4092517--4092591	29	2.6	29	80	6	71	20	6	6	66	1.38
4092585--4092640	22	2.6	21	80	5	58	25	5	1	67	1.21
4092637--4092661	11	2.3	11	100	0	50	16	8	8	68	1.38
4092732--4092773	22	2.0	22	86	9	61	26	4	2	66	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4092728--4092789	25	2.5	24	72	10	63	27	4	1	66	1.21
4092739--4092783	4	11.0	4	81	13	56	26	2	2	68	1.12
4092746--4092791	14	3.2	15	80	14	53	28	4	2	65	1.23
4093774--4093816	16	2.7	16	92	0	68	25	9	34	30	1.87
4095853--4095907	11	4.7	12	88	6	69	76	1	20	1	0.97
4095853--4095887	10	3.3	10	88	11	52	77	2	20	0	0.90
4095989--4096126	69	2.0	69	88	2	206	37	23	14	24	1.92
4097065--4097154	32	2.8	34	81	10	116	33	11	20	35	1.88
4097878--4098164	157	1.8	157	96	0	529	30	25	18	25	1.98
4098515--4098629	36	3.2	36	80	7	133	27	18	13	40	1.87
4098515--4098616	37	2.8	36	78	11	118	27	18	13	40	1.89
4098634--4098695	29	2.1	30	84	3	81	46	14	8	30	1.73
4100568--4100617	23	2.2	23	82	7	57	18	4	8	70	1.28
4100773--4100825	26	2.1	26	86	10	74	15	7	1	75	1.11
4100773--4100868	23	3.9	24	76	16	83	17	8	2	71	1.20
4113768--4113797	15	2.0	15	100	0	60	13	20	46	20	1.83
4118741--4118770	15	2.0	15	100	0	60	13	20	46	20	1.83
4123715--4123744	15	2.0	15	100	0	60	13	20	46	20	1.83
4128674--4128702	14	2.1	14	100	0	58	13	20	44	20	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22

The End!