genome.fa.s8645.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008645.1 Hibiscus syriacus cultivar Beakdansim tig00111621_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4138222

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   

This is table  14  of  22  ( 2605 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2543000--2543039	20	2.0	20	95	0	71	37	15	7	40	1.75
2543436--2543486	21	2.4	21	93	0	84	21	9	21	47	1.79
2543495--2543556	24	2.6	24	81	0	79	58	14	16	11	1.64
2547070--2547094	6	4.2	6	100	0	50	16	0	0	84	0.63
2552836--2552882	14	3.5	14	74	11	53	27	0	0	72	0.85
2553163--2553556	41	9.5	41	80	6	334	28	21	18	31	1.97
2553194--2553556	83	4.4	83	85	3	430	27	20	18	32	1.96
2553194--2553556	125	2.9	124	88	3	509	27	20	18	32	1.96
2557047--2557272	43	5.3	42	77	11	210	21	22	19	36	1.95
2557047--2557272	85	2.6	83	81	11	253	21	22	19	36	1.95
2558268--2558325	15	3.9	15	70	20	59	43	5	17	34	1.71
2558486--2558555	19	3.9	18	76	14	65	45	2	1	50	1.25
2558649--2558734	23	3.6	23	75	10	66	48	1	1	48	1.16
2558696--2558749	24	2.3	23	87	6	72	53	0	0	46	1.00
2558710--2558831	28	4.6	25	70	17	68	50	0	1	46	1.16
2559655--2559693	14	3.0	13	85	10	53	66	0	0	33	0.92
2560693--2560743	6	8.8	6	91	6	70	27	33	21	17	1.96
2560697--2560740	23	1.9	23	90	0	70	29	31	20	18	1.96
2561263--2561290	13	2.2	13	100	0	56	28	0	35	35	1.58
2566751--2566813	21	3.0	21	83	4	81	23	25	22	28	1.99
2566755--2566813	22	2.8	21	82	5	73	23	25	23	27	2.00
2567381--2567438	21	2.8	21	91	0	89	25	18	25	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2567509--2567538	12	2.5	12	94	0	51	16	13	23	46	1.82
2584300--2584668	156	2.4	156	86	5	503	26	17	6	48	1.71
2584365--2584709	155	2.2	156	83	4	430	27	17	6	47	1.73
2587595--2587632	19	1.9	19	89	5	58	65	7	2	23	1.32
2587640--2587691	14	3.2	16	76	20	54	57	0	0	42	0.98
2587638--2587676	14	2.7	15	88	11	64	56	0	0	43	0.99
2587642--2587714	30	2.4	30	84	9	85	57	0	0	42	0.98
2587918--2588060	60	2.4	61	88	3	200	20	33	30	15	1.93
2591645--2591684	17	2.4	17	100	0	80	37	30	5	27	1.78
2592242--2592315	29	2.6	29	97	2	141	18	21	16	43	1.88
2592662--2592821	64	2.5	63	82	4	178	29	17	21	31	1.96
2599102--2599180	29	2.8	29	90	1	124	20	21	15	43	1.88
2599196--2599230	12	2.9	12	100	0	70	40	25	0	34	1.56
2600598--2600754	64	2.4	63	82	8	167	33	20	19	26	1.96
2601490--2601704	103	2.1	103	94	0	376	26	12	24	37	1.90
2601724--2601786	23	2.7	23	90	0	90	19	26	26	26	1.99
2608316--2608387	16	4.4	16	73	22	53	38	0	0	61	0.96
2608319--2608383	24	2.6	24	77	20	71	40	0	0	60	0.97
2608323--2608394	32	2.3	32	81	13	80	41	0	0	58	0.98
2608641--2608680	20	2.0	20	90	0	62	47	7	20	25	1.75
2608830--2608894	34	1.9	34	87	6	96	46	4	0	49	1.22
2618746--2618779	14	2.3	15	90	5	52	73	2	0	23	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2618809--2618859	19	2.6	19	78	9	50	72	0	5	21	1.05
2620915--2621796	106	8.3	106	91	1	1390	22	18	25	33	1.96
2623325--2623419	22	4.2	22	76	12	86	1	15	5	77	0.99
2623350--2623414	13	5.4	12	78	17	57	0	15	3	81	0.81
2623359--2623414	8	7.1	8	80	8	53	0	16	1	82	0.76
2623350--2623417	18	3.4	21	74	15	72	0	14	4	80	0.85
2624601--2624651	27	1.9	26	84	11	68	49	5	15	29	1.68
2626393--2626430	3	12.7	3	83	10	51	73	0	0	26	0.83
2626387--2626431	19	2.3	20	92	3	74	73	0	0	26	0.84
2628028--2628067	20	2.0	20	85	4	55	62	2	5	30	1.29
2628062--2628101	18	2.2	18	86	4	53	55	2	0	42	1.13
2629254--2629330	37	2.1	37	82	4	93	24	15	5	54	1.61
2629293--2629576	42	6.7	41	72	14	161	25	20	6	47	1.74
2629310--2629576	126	2.1	128	80	10	300	24	20	6	48	1.73
2632404--2632442	20	2.0	20	90	10	62	33	0	0	66	0.92
2633317--2633622	154	2.0	154	98	1	591	19	19	19	41	1.91
2638290--2638339	19	2.7	18	78	9	55	30	4	2	64	1.23
2643491--2643570	26	3.3	25	73	19	89	26	23	10	40	1.86
2643501--2643584	20	4.0	20	74	18	71	27	25	10	36	1.89
2643499--2643589	46	2.0	46	84	4	121	26	26	10	36	1.90
2644179--2644232	12	4.5	12	81	6	56	70	11	14	3	1.29
2644178--2644224	24	2.0	23	87	4	67	68	12	14	4	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2644179--2644226	12	4.2	11	84	10	60	70	10	14	4	1.29
2644166--2644234	18	3.8	19	70	18	56	72	11	13	2	1.23
2645391--2645418	14	2.0	14	100	0	56	50	28	0	21	1.49
2646057--2646174	36	3.4	36	79	8	111	31	21	12	34	1.91
2646075--2646174	35	2.9	36	78	11	104	34	21	12	33	1.90
2646422--2646518	28	3.5	27	83	8	124	29	8	15	46	1.75
2646414--2646518	27	3.9	28	83	10	139	27	8	14	49	1.72
2646449--2646533	28	3.1	27	86	3	89	31	9	12	45	1.74
2646422--2646533	55	2.0	56	83	8	140	30	8	14	46	1.75
2646529--2646632	52	2.0	53	94	1	183	30	13	18	37	1.89
2646616--2646689	27	2.7	27	87	4	103	32	8	14	44	1.75
2646618--2646771	32	5.2	28	77	13	116	35	7	12	43	1.72
2646675--2646770	32	3.1	31	90	3	140	38	7	12	41	1.71
2646754--2646870	37	3.3	37	67	17	113	31	12	10	45	1.76
2646722--2646889	67	2.5	67	91	4	261	30	12	10	45	1.76
2647238--2647294	27	2.1	27	93	0	96	31	8	14	45	1.75
2647313--2647387	38	2.0	38	89	7	118	29	21	12	37	1.89
2647464--2647591	63	2.0	63	83	6	157	26	14	14	44	1.83
2647887--2648254	40	8.7	42	73	11	254	25	30	20	23	1.98
2647886--2648308	46	9.9	45	72	14	261	25	29	19	25	1.99
2647883--2648300	129	3.3	129	96	1	761	25	29	19	25	1.98
2648463--2648526	3	22.0	3	78	12	71	28	3	1	67	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2648461--2648524	32	2.0	32	90	6	103	26	4	3	65	1.27
2653235--2653270	18	1.9	18	88	5	54	44	0	0	55	0.99
2660453--2660485	12	2.8	12	86	13	50	60	0	33	6	1.21
2668416--2668459	15	2.8	16	83	16	56	38	0	59	2	1.10
2671769--2671827	31	1.9	31	96	0	109	52	16	10	20	1.72
2673240--2673295	21	2.7	21	82	0	76	21	35	32	10	1.88
2675082--2675222	70	2.0	70	100	0	282	43	12	8	34	1.73
2685547--2685613	30	2.2	30	86	7	100	32	7	0	59	1.25
2685719--2685767	21	2.3	23	83	16	70	32	0	0	67	0.91
2685718--2685768	11	4.8	11	77	18	54	33	0	0	66	0.92
2686543--2686905	43	8.5	42	73	13	244	27	16	4	51	1.64
2686593--2686925	129	2.6	128	81	7	343	27	18	5	49	1.68
2686585--2686905	43	7.5	42	77	8	256	27	17	4	50	1.66
2686586--2686902	87	3.7	84	77	9	293	27	17	4	50	1.65
2686585--2686943	43	8.3	43	75	10	243	27	17	4	50	1.66
2718021--2718125	39	2.7	39	86	5	142	40	1	8	48	1.45
2718105--2718140	2	18.5	2	94	5	65	52	0	0	47	1.00
2718068--2718173	55	1.9	53	83	9	133	43	2	7	46	1.46
2718123--2718484	37	9.8	37	81	10	368	45	4	6	43	1.50
2718161--2718484	75	4.3	75	83	6	349	45	4	6	43	1.49
2718126--2718472	38	9.3	37	84	7	377	45	4	6	43	1.49
2718449--2718509	24	2.5	23	89	7	86	45	3	8	42	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2718449--2718509	25	2.5	25	87	12	83	45	3	8	42	1.50
2718374--2718565	99	1.9	100	82	7	239	47	3	6	43	1.44
2718411--2718527	61	1.9	63	85	7	168	46	3	6	43	1.47
2718485--2718566	39	2.1	39	89	10	125	47	1	4	46	1.31
2718564--2718600	6	6.2	6	96	0	56	21	0	0	78	0.75
2719109--2719152	14	2.9	15	75	18	54	4	13	29	52	1.60
2722841--2722880	21	1.9	21	94	0	71	15	25	35	25	1.94
2725094--2725143	26	2.0	24	88	7	73	38	4	4	54	1.38
2725315--2725353	20	2.0	20	84	0	51	23	7	23	46	1.78
2725553--2725590	20	1.9	20	88	0	58	18	26	31	23	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22