genome.fa.s9643.2.7.7.80.10.50.1000.33.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009643.1 Hibiscus syriacus cultivar Beakdansim tig00117056_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8859806

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   

This is table  33  of  41  ( 4862 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6979576--6979625	14	3.5	14	97	2	91	26	20	16	38	1.92
6981099--6981136	20	1.9	20	94	0	67	31	34	15	18	1.92
6981147--6981288	65	2.2	64	88	6	207	32	23	17	26	1.97
6986193--6986256	30	2.1	30	100	0	128	35	6	29	28	1.82
7007457--7007503	21	2.2	21	88	0	67	29	29	17	23	1.97
7007641--7007665	6	4.2	6	100	0	50	36	32	0	32	1.58
7007662--7007699	6	6.5	6	96	3	69	31	52	15	0	1.43
7008318--7008372	21	2.6	21	82	0	74	30	23	21	23	1.99
7016063--7016101	20	2.0	20	94	0	69	25	10	10	53	1.66
7023881--7023925	15	3.0	15	75	12	56	57	2	31	8	1.41
7025951--7026087	70	2.0	68	85	12	185	46	8	5	39	1.57
7030739--7030800	25	2.6	25	82	7	67	70	4	14	9	1.29
7030769--7030811	22	2.0	22	90	4	70	74	0	11	13	1.07
7031376--7031418	18	2.5	17	85	7	61	67	2	4	25	1.22
7031775--7031879	37	2.8	37	85	0	138	29	14	12	43	1.82
7032422--7033053	105	6.0	105	88	3	864	22	17	25	34	1.96
7033252--7033327	36	2.1	36	85	0	98	40	13	21	25	1.89
7033227--7033545	106	3.1	104	88	4	443	37	10	20	31	1.87
7033540--7033616	39	2.0	39	84	0	100	37	16	16	28	1.91
7033676--7033790	36	3.2	36	73	9	110	44	9	17	28	1.80
7033616--7033790	72	2.4	74	83	8	198	41	12	18	28	1.86
7034914--7035450	183	2.9	183	94	0	941	31	21	20	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7040809--7040848	20	2.0	21	85	5	55	72	0	10	17	1.11
7041322--7041440	58	2.0	57	83	4	148	63	1	3	31	1.21
7041575--7041603	14	2.1	14	100	0	58	13	31	13	41	1.84
7041818--7041922	37	2.8	37	88	0	147	29	13	12	44	1.80
7043359--7043536	87	2.0	87	96	0	329	30	1	10	57	1.42
7061568--7061627	20	2.6	24	75	25	74	71	8	8	11	1.30
7061580--7061630	20	2.5	20	100	0	102	64	9	9	15	1.48
7061733--7061771	20	2.0	20	94	0	69	56	7	7	28	1.55
7061914--7061945	12	2.7	12	100	0	64	21	34	25	18	1.96
7062352--7062386	10	3.4	10	88	4	52	40	28	2	28	1.71
7064147--7064184	20	1.9	20	88	0	58	55	7	2	34	1.43
7081498--7081543	20	2.3	19	89	10	74	32	0	2	65	1.05
7082290--7082373	33	2.5	34	82	3	109	25	11	21	41	1.87
7082350--7082538	37	5.2	36	72	14	129	17	10	31	40	1.83
7103153--7103184	16	2.0	16	93	0	55	59	0	3	37	1.13
7111691--7111785	27	3.6	27	97	2	176	41	15	12	30	1.85
7114262--7114416	64	2.4	65	78	10	158	34	20	16	27	1.95
7115073--7115197	31	4.0	31	91	4	200	20	18	22	39	1.93
7115074--7115196	62	2.0	62	95	3	221	20	18	21	39	1.92
7118199--7118266	27	2.6	27	93	4	113	42	16	10	30	1.81
7124954--7124986	16	2.1	16	88	11	50	15	9	0	75	1.03
7125645--7125687	18	2.5	17	85	7	61	67	2	4	25	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7126680--7127310	105	6.0	105	88	3	844	22	17	25	34	1.96
7127514--7127584	36	2.0	36	91	0	115	35	16	23	23	1.95
7127485--7127803	105	3.1	104	91	2	500	36	11	21	30	1.89
7127702--7127780	39	2.0	39	85	0	104	37	11	20	30	1.88
7127874--7128044	72	2.3	75	82	7	190	40	11	18	29	1.85
7129190--7129726	183	2.9	183	95	0	950	30	21	20	27	1.98
7133992--7134034	18	2.5	17	85	7	61	67	2	4	25	1.22
7133917--7134022	55	1.9	55	82	7	133	61	1	2	33	1.22
7134391--7134494	37	2.8	37	86	0	136	31	13	11	43	1.80
7138879--7138916	19	2.1	18	90	5	58	42	10	5	42	1.62
7140944--7140977	12	2.8	12	81	0	50	14	0	47	38	1.45
7166305--7166340	18	2.0	18	100	0	72	22	16	33	27	1.95
7170719--7170763	20	2.2	20	88	0	63	35	11	22	31	1.89
7177813--7177882	27	2.7	26	74	10	72	38	0	1	60	1.06
7182287--7182328	21	2.0	21	90	0	66	26	26	21	26	1.99
7182442--7182497	15	3.5	15	73	21	51	19	21	35	23	1.96
7182490--7182548	20	3.1	19	83	9	75	18	30	30	20	1.96
7182441--7182523	33	2.5	33	90	2	130	18	25	33	22	1.96
7182513--7182556	20	2.3	19	84	7	54	22	31	20	25	1.98
7183978--7184025	19	2.5	20	82	3	62	29	12	6	52	1.63
7185243--7185284	21	2.0	21	90	9	68	26	28	19	26	1.98
7185396--7185480	34	2.5	35	83	11	106	21	23	34	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7191121--7191181	22	3.0	20	73	17	61	31	24	19	24	1.98
7190951--7191315	135	2.9	123	77	11	371	30	21	18	29	1.96
7191110--7191173	22	3.0	21	72	17	69	32	25	15	26	1.95
7191169--7191193	13	1.9	13	100	0	50	24	20	24	32	1.98
7191047--7191316	135	2.0	135	88	1	407	29	21	17	31	1.96
7191232--7191318	42	2.1	42	88	0	129	32	21	17	28	1.96
7191454--7191546	42	2.2	41	79	7	107	30	20	21	27	1.98
7200503--7200563	26	2.3	26	100	0	122	9	49	0	40	1.36
7216348--7217087	201	3.7	202	92	1	1227	31	17	14	36	1.90
7219167--7219232	33	2.0	33	93	0	114	22	46	0	30	1.52
7219267--7219310	21	2.1	21	91	0	70	15	31	11	40	1.83
7221542--7221587	20	2.3	19	82	10	65	19	17	10	52	1.74
7222370--7222418	23	2.1	23	88	0	71	20	22	18	38	1.93
7226305--7226330	13	2.0	13	100	0	52	69	0	0	30	0.89
7238000--7238086	35	2.5	35	78	0	102	45	11	12	29	1.77
7238026--7238081	18	3.2	18	82	5	69	46	10	14	28	1.78
7238907--7238997	23	4.0	23	83	0	110	28	26	24	20	1.99
7240274--7240331	20	2.7	20	81	10	62	25	24	20	29	1.99
7241095--7241126	15	2.1	15	94	0	55	56	0	12	31	1.37
7245763--7245802	13	3.0	13	88	3	53	50	17	0	32	1.47
7245766--7245859	27	3.5	27	89	1	127	44	18	8	28	1.78
7248502--7248545	22	2.0	22	86	4	63	18	25	29	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7248598--7248649	21	2.6	19	82	8	59	25	15	9	50	1.74
7248983--7249018	16	2.3	16	95	4	65	55	5	11	27	1.57
7249071--7249115	12	3.6	13	82	8	58	42	0	0	57	0.98
7250286--7250334	2	24.5	2	100	0	98	48	0	0	51	1.00
7254235--7254584	183	1.9	183	94	1	612	27	20	22	30	1.98
7255760--7255863	52	2.0	52	96	0	190	29	17	15	37	1.90
7255976--7256025	21	2.4	21	93	0	82	26	28	10	36	1.88
7256082--7256168	37	2.4	37	82	1	95	28	19	12	39	1.88
7256055--7256462	102	4.0	101	87	2	523	29	18	13	38	1.89
7256184--7256269	37	2.4	37	86	2	120	25	22	12	39	1.89
7256286--7256462	36	5.1	36	76	12	145	24	18	15	42	1.88
7256055--7256462	203	2.0	204	85	3	545	29	18	13	38	1.89
7256460--7256591	67	1.9	69	84	3	178	32	23	7	36	1.83
7258497--7258561	2	32.5	2	100	0	130	49	0	0	50	1.00
7261778--7261805	2	14.0	2	100	0	56	50	0	0	50	1.00
7264798--7264824	2	13.5	2	100	0	54	48	0	0	51	1.00
7271308--7271442	37	3.6	35	84	8	126	45	2	6	45	1.42
7271342--7271465	37	3.3	38	84	8	146	50	2	5	41	1.39
7271352--7271553	108	1.9	107	81	7	248	48	2	5	43	1.40
7272789--7272831	20	2.2	20	91	0	68	20	2	2	74	1.04
7272862--7272913	12	4.6	11	82	15	54	21	0	7	71	1.11
7273091--7273123	15	2.2	15	89	10	50	21	9	6	63	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7278325--7279729	164	8.5	163	79	6	1205	29	24	20	25	1.99
7278329--7279729	248	5.7	245	82	5	1385	29	24	20	25	1.99
7278329--7279814	412	3.6	410	85	4	1864	30	24	19	25	1.98
7280344--7280410	2	34.0	2	93	3	118	49	1	0	49	1.10
7280430--7280568	36	3.8	37	88	6	185	46	3	5	43	1.44
7280430--7280568	73	1.9	75	88	5	212	46	3	5	43	1.44
7280631--7280655	12	2.1	12	100	0	50	40	8	8	44	1.63
7280476--7280679	110	1.9	109	81	9	254	46	2	6	43	1.45
7281890--7281932	20	2.2	20	91	0	68	20	2	2	74	1.04
7281890--7281950	20	3.2	19	83	4	61	16	6	1	75	1.09

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41