genome.fa.s192.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold192
Parameters: 2 7 7 80 10 50 1000
Length:  2196177

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  10  of  14  ( 1592 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1435005--1435092	41	2.1	41	95	0	158	38	12	11	37	1.79
1435471--1435511	17	2.4	17	88	12	57	9	17	4	68	1.35
1436287--1436313	2	13.5	2	100	0	54	48	0	0	51	1.00
1442320--1442414	20	4.8	20	85	7	122	27	14	13	44	1.83
1442320--1442414	40	2.4	40	92	0	154	27	14	13	44	1.83
1444705--1445020	79	4.0	78	77	2	319	27	24	14	33	1.94
1449285--1449354	16	4.2	16	90	5	104	87	8	1	2	0.71
1449285--1449363	32	2.4	34	87	4	108	86	7	3	2	0.78
1449280--1449354	11	6.9	10	78	19	71	85	10	1	2	0.76
1449280--1449363	21	3.8	22	78	16	77	84	9	3	2	0.83
1449285--1449354	1	70.0	1	73	0	59	87	8	1	2	0.71
1450385--1450472	26	3.3	26	67	14	79	26	31	20	21	1.98
1450356--1451198	55	15.0	55	88	3	1087	27	26	20	26	1.99
1450322--1451195	282	3.1	279	86	5	1170	27	26	19	26	1.99
1450322--1451519	337	3.6	340	87	6	1551	26	26	19	26	1.99
1451240--1451585	61	5.9	60	83	8	381	26	27	20	26	1.99
1451009--1451407	210	1.9	211	94	0	710	26	28	20	25	1.99
1451240--1451591	116	3.0	115	84	7	422	26	27	19	26	1.99
1452279--1452308	13	2.3	13	94	0	51	30	13	13	43	1.82
1452342--1452397	20	2.8	20	100	0	112	26	17	14	41	1.88
1454708--1455015	79	3.9	79	80	5	327	27	26	13	32	1.93
1455968--1456110	41	3.5	41	82	5	164	44	14	19	21	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1456045--1457401	107	12.8	105	71	11	513	44	15	22	18	1.86
1456236--1456822	320	1.8	321	80	3	698	45	15	21	17	1.85
1456625--1457458	318	2.6	316	77	6	693	45	15	21	17	1.86
1457623--1457794	60	2.9	59	79	3	184	49	18	15	17	1.80
1457597--1457763	59	2.8	60	81	3	194	47	17	15	19	1.82
1458522--1458576	20	2.7	20	77	2	56	38	9	18	34	1.82
1461759--1461796	2	19.0	2	100	0	76	50	0	0	50	1.00
1462035--1462104	21	3.2	21	67	21	63	50	10	15	24	1.75
1462022--1462134	44	2.6	44	95	0	199	48	9	17	23	1.77
1462108--1462247	44	3.2	46	64	23	111	44	13	18	23	1.85
1462065--1462317	88	2.9	88	82	5	291	44	14	18	22	1.86
1462642--1462674	17	1.9	17	88	11	50	12	12	0	75	1.04
1464748--1464780	17	1.9	17	93	0	57	33	9	6	51	1.58
1464866--1464920	27	2.0	27	96	0	101	40	20	10	29	1.86
1466939--1466982	14	3.1	14	83	6	61	54	0	15	29	1.42
1467428--1467472	19	2.4	18	82	14	56	51	2	0	46	1.13
1469326--1469366	3	13.7	3	100	0	82	31	0	0	68	0.90
1469459--1469549	38	2.4	39	81	5	114	28	9	19	41	1.84
1470567--1470603	2	18.5	2	94	0	65	48	0	2	48	1.15
1471467--1471491	2	12.5	2	100	0	50	52	0	0	48	1.00
1475372--1475449	27	3.1	25	74	22	74	57	1	0	41	1.07
1475381--1475424	21	2.1	21	87	8	63	61	0	0	38	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1480984--1481026	2	21.5	2	90	0	68	46	48	4	0	1.22
1481465--1481764	149	2.0	151	86	2	417	39	22	15	22	1.91
1490916--1490959	22	2.0	22	81	0	52	63	4	0	31	1.14
1494237--1494304	33	2.1	33	100	0	136	35	0	14	50	1.44
1494297--1494327	15	2.1	15	93	0	53	19	16	6	58	1.59
1494980--1495010	2	15.5	2	100	0	62	48	0	0	51	1.00
1495086--1495198	58	2.0	57	87	1	163	32	16	15	34	1.91
1499410--1499452	22	1.9	23	90	4	70	46	6	0	46	1.30
1500753--1500878	41	3.1	41	75	6	121	42	15	21	21	1.89
1500753--1500866	40	2.8	41	80	5	124	42	14	21	21	1.88
1503492--1503624	52	2.5	52	85	4	185	28	18	16	36	1.92
1503492--1503644	52	2.9	51	82	7	139	30	17	16	35	1.93
1503633--1503657	13	1.9	13	100	0	50	36	16	16	32	1.90
1504057--1505358	432	3.0	430	92	1	2149	34	16	18	30	1.93
1508301--1508518	79	2.8	78	82	4	242	33	12	24	29	1.93
1508537--1508722	102	1.8	102	89	0	291	32	14	25	27	1.94
1508654--1508727	28	2.6	28	83	10	98	25	20	31	22	1.98
1508714--1508882	51	3.3	50	73	6	135	33	14	23	28	1.94
1516821--1516883	32	2.0	32	84	12	85	53	1	19	25	1.53
1516982--1517090	46	2.4	47	81	6	125	51	3	0	44	1.25
1517123--1517165	22	2.0	21	86	9	59	51	6	0	41	1.29
1517111--1517199	40	2.3	38	77	9	90	47	4	1	47	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1517845--1517877	15	2.2	15	89	10	50	75	0	9	15	1.03
1520582--1520632	22	2.3	20	83	12	57	56	1	0	41	1.10
1532207--1532233	2	13.5	2	100	0	54	0	48	0	51	1.00
1537211--1538443	332	3.7	332	83	4	1422	29	10	9	51	1.67
1537325--1538443	167	6.7	167	83	4	1320	28	10	9	51	1.67
1538682--1538781	2	50.0	2	100	0	200	0	50	0	50	1.00
1544715--1544739	2	12.5	2	100	0	50	48	0	0	52	1.00
1551675--1551701	13	2.1	13	100	0	54	29	14	14	40	1.86
1554243--1554271	2	14.5	2	100	0	58	48	0	0	51	1.00
1554687--1554717	2	15.5	2	100	0	62	48	0	0	51	1.00
1561219--1561245	13	2.1	13	100	0	54	29	14	14	40	1.86
1563789--1563813	2	12.5	2	100	0	50	48	0	0	52	1.00
1564231--1564271	2	20.5	2	100	0	82	48	0	0	51	1.00
1570765--1570791	13	2.1	13	100	0	54	29	14	14	40	1.86
1573771--1573809	2	19.5	2	100	0	78	48	0	0	51	1.00
1580283--1580314	13	2.5	13	94	0	55	31	15	12	40	1.85
1581533--1581574	16	2.6	16	75	14	50	52	19	7	21	1.69
1584764--1584792	3	9.7	3	100	0	58	68	0	0	31	0.89
1585506--1585552	24	2.0	24	91	8	78	42	2	0	55	1.12
1585988--1586076	38	2.3	38	78	3	99	40	1	0	58	1.05
1586008--1586092	39	2.2	39	80	4	91	44	0	0	55	0.99
1586563--1586641	39	2.0	40	83	9	101	55	0	1	43	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1587349--1587402	20	2.5	23	76	14	60	61	0	0	38	0.96
1587359--1587398	20	1.9	22	90	10	66	70	0	0	30	0.88
1588243--1588293	19	2.5	20	81	9	59	31	3	0	64	1.11
1598713--1598781	31	2.4	29	85	9	79	44	11	4	39	1.61
1608246--1608305	31	1.9	31	89	0	93	35	18	8	38	1.81
1610538--1610714	79	2.2	79	83	6	216	34	12	23	29	1.92
1610649--1610765	51	2.3	51	85	2	155	34	8	23	34	1.85
1610708--1611065	79	4.5	79	78	5	357	34	12	25	27	1.92
1610574--1610844	130	2.1	130	82	6	327	33	11	24	29	1.91
1610513--1610920	209	1.9	209	84	5	538	35	11	24	28	1.90
1610974--1611032	28	2.0	30	83	9	77	33	15	23	27	1.95
1614510--1614557	24	2.0	25	88	12	73	25	4	8	62	1.41
1617894--1619468	48	32.7	47	79	6	1367	25	49	4	21	1.68
1618135--1618835	27	29.0	27	61	22	148	25	50	4	20	1.66
1618248--1618809	24	23.4	24	61	11	94	24	50	4	20	1.66
1620661--1620703	13	3.4	13	80	6	52	79	2	18	0	0.85
1620659--1620702	8	5.4	8	86	5	61	81	2	15	0	0.78
1620662--1620695	17	1.9	18	94	5	61	82	0	17	0	0.67
1620773--1620834	28	2.2	28	83	13	74	11	14	3	70	1.27
1621023--1621365	146	2.3	146	80	5	365	29	12	14	42	1.83
1621579--1621626	19	2.5	19	80	10	53	22	4	4	68	1.24
1622036--1622155	39	3.1	39	72	8	118	32	13	13	40	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1623249--1623291	20	2.2	20	83	8	52	20	4	13	60	1.51
1626103--1626141	20	2.0	19	85	5	51	33	15	7	43	1.75
1636037--1636087	20	2.5	21	93	3	86	37	9	19	33	1.85
1638635--1638706	27	2.7	27	89	4	92	19	26	23	30	1.98
1643221--1643279	21	2.8	21	87	5	75	64	0	18	16	1.29
1645541--1645679	55	2.5	55	95	1	242	37	7	19	35	1.81
1646018--1646056	20	1.9	21	89	5	62	41	2	28	28	1.69
1645628--1646211	292	2.0	294	90	3	928	40	5	24	29	1.78
1647451--1647548	36	2.9	35	83	8	125	31	13	25	29	1.93
1647453--1647548	32	3.0	31	80	16	115	31	13	25	30	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14