genome.fa.s192.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold192
Parameters: 2 7 7 80 10 50 1000
Length:  2196177

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  7  of  14  ( 1592 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
992249--992290	14	2.9	14	82	6	57	76	7	2	14	1.10
1000554--1000611	21	2.8	21	81	5	73	36	15	15	32	1.89
1000668--1000692	13	1.9	13	100	0	50	36	16	16	32	1.90
1000649--1000711	32	2.0	32	93	0	108	33	12	17	36	1.88
1000648--1000714	19	3.8	19	74	22	74	34	11	16	37	1.85
1000754--1000779	13	2.0	13	100	0	52	30	15	15	38	1.88
1003229--1003298	27	2.5	28	88	2	97	24	32	21	21	1.98
1003117--1003506	51	7.4	50	70	15	207	29	26	12	31	1.93
1003284--1003506	52	4.3	53	81	6	224	29	26	12	31	1.93
1003489--1003565	28	2.8	28	85	0	91	23	35	19	22	1.96
1003115--1003616	264	1.9	262	89	3	785	28	27	13	30	1.94
1004744--1004802	24	2.5	23	83	10	66	28	5	5	61	1.39
1004771--1004805	18	1.9	18	88	11	54	34	2	0	62	1.10
1006264--1006310	21	2.2	21	85	7	60	46	23	23	6	1.75
1010859--1010916	13	4.0	13	76	23	62	39	15	15	29	1.88
1010855--1010936	32	2.5	34	92	5	134	41	15	14	28	1.87
1016831--1016855	8	3.1	8	100	0	50	12	0	28	60	1.32
1019427--1019451	13	1.9	13	100	0	50	32	16	16	36	1.90
1019404--1019469	33	2.0	33	90	0	105	30	16	16	36	1.91
1019542--1019567	13	2.0	13	100	0	52	38	15	15	30	1.88
1019526--1019587	33	1.9	32	87	9	90	41	17	12	27	1.86
1021036--1021545	30	15.5	32	77	15	194	21	32	13	31	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1021036--1021227	98	2.0	97	96	1	357	22	30	15	31	1.94
1021229--1021932	96	7.0	97	72	17	475	20	33	12	33	1.90
1021296--1021356	28	2.2	27	85	2	77	21	34	14	29	1.93
1021067--1021985	68	13.7	68	77	12	719	21	33	12	32	1.90
1021561--1021862	34	9.2	28	69	22	93	20	34	11	33	1.89
1021225--1021985	266	2.8	265	84	7	955	20	34	11	32	1.89
1021561--1021622	28	2.3	27	88	2	88	22	35	12	29	1.91
1021067--1021918	333	2.6	321	81	10	905	21	33	12	32	1.91
1021067--1021972	33	27.0	34	76	13	579	20	33	12	33	1.90
1021069--1021985	96	9.1	103	77	12	450	21	34	12	32	1.90
1022034--1022461	49	8.8	49	87	5	577	25	26	17	30	1.98
1022039--1022461	146	2.9	144	89	6	606	25	26	18	30	1.98
1022349--1022416	21	3.2	21	67	19	59	26	25	17	30	1.97
1022280--1022417	43	3.1	43	89	7	188	25	25	18	30	1.98
1022371--1022532	52	3.1	52	79	6	191	24	22	14	37	1.92
1022280--1022470	95	2.0	92	87	6	269	25	24	17	32	1.97
1022474--1022600	67	1.9	68	86	1	184	23	25	12	38	1.90
1023375--1023399	13	1.9	13	100	0	50	36	16	16	32	1.90
1023355--1023421	33	2.0	33	85	0	89	32	11	13	41	1.81
1023462--1023486	13	1.9	13	100	0	50	32	16	16	36	1.90
1023495--1023615	52	2.3	52	94	0	206	36	18	16	28	1.92
1026940--1026965	9	2.9	9	100	0	52	92	7	0	0	0.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1028888--1028937	24	2.1	24	85	7	66	30	4	6	60	1.39
1030026--1030227	79	2.6	79	86	3	255	32	16	25	25	1.96
1030181--1030236	28	2.0	28	82	6	69	26	19	32	21	1.97
1030252--1030411	51	3.1	50	80	9	171	34	10	23	31	1.88
1030330--1030458	51	2.5	51	81	2	143	34	13	24	27	1.93
1030131--1030622	262	1.9	262	93	0	840	32	12	25	29	1.93
1030441--1030517	28	2.8	28	85	0	91	22	19	35	23	1.96
1032986--1033011	13	2.0	13	100	0	52	38	15	15	30	1.88
1032998--1033039	21	2.0	21	100	0	84	28	19	9	42	1.82
1033066--1033113	19	2.5	19	96	0	87	39	18	10	31	1.85
1033173--1033226	21	2.6	21	93	0	90	37	14	12	35	1.85
1034006--1034080	20	3.8	20	78	0	87	34	13	12	40	1.81
1034006--1034083	40	2.0	39	87	2	111	34	12	12	39	1.82
1034989--1035045	23	2.5	23	100	0	114	17	10	8	63	1.51
1034997--1035052	23	2.6	21	86	8	51	19	8	8	62	1.51
1038348--1038387	21	1.9	21	84	0	53	15	7	7	70	1.33
1049362--1050796	28	50.0	29	85	6	1728	27	31	18	21	1.97
1049362--1050796	58	25.0	58	84	7	1728	27	31	18	21	1.97
1051357--1051431	20	3.8	20	78	0	87	34	13	12	40	1.81
1051357--1051434	40	2.0	39	87	2	111	34	12	12	39	1.82
1052340--1052396	22	2.5	24	88	11	100	17	10	8	63	1.51
1052349--1052403	22	2.6	21	88	5	58	20	9	9	61	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1056901--1057017	53	2.2	54	83	9	150	55	5	2	36	1.36
1056924--1057159	132	1.8	130	81	9	293	52	6	2	38	1.39
1057146--1057686	53	10.4	51	75	15	398	53	5	2	38	1.38
1057146--1057323	52	3.5	50	80	10	168	55	5	5	34	1.44
1057422--1057508	43	2.0	44	93	2	149	51	8	1	39	1.39
1057011--1057686	97	6.6	104	71	18	421	52	5	2	38	1.39
1058047--1058103	22	2.6	22	91	0	96	36	12	10	40	1.77
1058164--1058381	73	2.9	75	87	5	325	46	20	11	21	1.82
1058430--1058484	22	2.5	22	85	5	67	34	7	12	45	1.70
1058766--1058823	22	2.6	23	83	5	66	34	6	12	46	1.68
1059093--1059159	22	2.9	24	68	20	61	46	1	0	52	1.09
1059325--1059375	2	25.5	2	100	0	102	49	0	0	50	1.00
1061055--1061093	8	4.6	8	84	12	51	71	0	0	28	0.86
1061054--1061093	18	2.3	17	86	4	53	72	0	0	27	0.85
1061081--1061128	17	2.8	18	78	9	57	77	0	6	16	0.97
1061342--1061393	9	5.6	9	80	19	54	11	1	0	86	0.65
1061352--1061392	7	5.9	7	100	0	82	12	0	0	87	0.53
1066519--1066559	2	20.5	2	94	0	73	0	46	0	53	1.00
1067864--1067902	2	19.5	2	100	0	78	48	0	0	51	1.00
1076366--1076440	20	3.8	20	80	3	80	40	12	13	34	1.81
1076363--1076440	40	2.0	39	87	2	111	39	12	12	34	1.82
1076969--1077884	32	30.2	30	91	3	930	18	17	33	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1079109--1079143	17	2.0	17	94	5	61	0	2	5	91	0.50
1079109--1079141	8	3.7	9	88	12	50	0	3	6	90	0.52
1093158--1093232	20	3.8	20	80	3	80	40	12	13	34	1.81
1093155--1093232	40	2.0	39	87	2	111	39	12	12	34	1.82
1097304--1097378	35	2.1	35	100	0	150	32	18	21	28	1.97
1099610--1100190	148	3.9	148	91	1	891	34	13	12	40	1.81
1101285--1101344	29	2.1	29	81	6	68	28	13	20	38	1.90
1104373--1104413	19	2.2	19	95	0	73	26	24	14	34	1.94
1105046--1105113	19	3.9	19	78	21	85	35	11	14	38	1.83
1105067--1105091	13	1.9	13	100	0	50	36	16	16	32	1.90
1105048--1105110	32	2.0	32	96	0	117	34	12	15	36	1.86
1105153--1105178	13	2.0	13	100	0	52	30	15	15	38	1.88
1105133--1105199	33	2.0	33	88	0	98	25	14	16	43	1.86
1107531--1107864	52	6.3	52	70	15	163	29	26	13	31	1.94
1107637--1107712	27	2.8	28	89	2	109	23	34	21	21	1.97
1107695--1107865	52	3.3	50	76	10	166	29	26	12	30	1.93
1107848--1107924	28	2.8	28	85	0	91	23	32	19	24	1.97
1107526--1107929	212	1.9	212	88	5	620	27	27	13	30	1.94
1114051--1114077	3	9.0	3	100	0	54	66	0	0	33	0.92
1116923--1116948	3	8.7	3	100	0	52	69	0	0	30	0.89
1117052--1117097	21	2.2	21	100	0	92	54	8	4	32	1.51
1120723--1120789	33	2.0	33	88	0	98	34	11	13	40	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1120743--1120767	13	1.9	13	100	0	50	36	16	16	32	1.90
1120830--1120857	13	2.2	13	100	0	56	28	14	17	39	1.89
1120863--1120986	52	2.4	52	93	1	205	35	17	18	28	1.94
1127986--1128043	23	2.7	21	75	19	57	62	0	0	37	0.96
1136541--1136584	21	2.1	21	83	8	54	25	31	4	38	1.76
1140476--1140510	15	2.2	16	90	5	54	14	20	14	51	1.76
1142314--1142358	21	2.1	21	88	8	65	22	17	4	55	1.60
1145626--1145761	50	2.7	51	85	3	177	26	16	13	43	1.85
1145726--1145800	20	3.8	20	98	0	141	33	18	10	37	1.86
1145646--1145760	51	2.3	50	87	1	158	26	15	14	42	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14