genome.fa.s192.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold192
Parameters: 2 7 7 80 10 50 1000
Length:  2196177

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  4  of  14  ( 1592 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
541311--541356	17	2.8	16	78	21	58	41	2	6	50	1.40
543879--543930	19	2.7	19	81	3	68	40	11	15	32	1.83
543920--543958	20	1.9	21	89	5	62	20	17	20	41	1.91
544540--544608	21	3.2	21	78	12	70	28	26	1	43	1.63
544540--544583	22	2.0	22	91	4	72	29	25	2	43	1.67
546123--546170	23	2.1	23	96	0	87	25	16	22	35	1.95
550119--550189	28	2.5	28	86	4	90	22	16	36	23	1.94
550198--550300	53	1.9	53	84	7	138	36	8	22	32	1.85
552666--552691	13	2.0	13	100	0	52	38	15	15	30	1.88
552735--552786	13	3.5	13	73	26	50	36	17	13	32	1.89
552743--552807	19	3.8	18	73	24	68	38	15	12	33	1.85
552735--552805	32	2.2	32	94	0	124	36	16	12	33	1.87
552843--552915	21	3.5	20	90	7	94	36	17	13	31	1.89
555020--555094	20	3.8	20	83	0	96	32	12	13	42	1.80
555110--555160	20	2.5	20	93	0	84	31	11	15	41	1.83
558649--558690	21	2.0	21	100	0	84	33	0	33	33	1.58
569131--569187	1	57.0	1	75	0	51	87	12	0	0	0.54
569131--569187	8	7.1	8	90	5	89	87	12	0	0	0.54
569136--569187	17	3.1	17	91	8	81	88	11	0	0	0.52
569131--569182	7	7.3	7	85	14	63	88	11	0	0	0.52
570476--570939	28	16.5	28	81	4	522	29	30	16	23	1.97
570476--570939	169	2.8	167	84	2	588	29	30	16	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
572034--572107	20	3.8	20	78	1	87	33	13	12	40	1.82
577009--577065	20	2.8	20	89	0	78	31	10	14	43	1.79
577493--577531	12	3.2	12	85	3	51	25	30	5	38	1.78
580334--580359	13	2.0	13	100	0	52	30	15	15	38	1.88
580314--580377	33	2.0	32	90	3	101	26	14	20	39	1.90
580459--580483	13	1.9	13	100	0	50	36	16	16	32	1.90
589081--589106	13	2.0	13	100	0	52	30	15	15	38	1.88
589061--589124	33	2.0	32	90	3	101	26	14	20	39	1.90
589167--589218	20	2.5	20	81	3	59	34	15	13	36	1.87
592639--592706	33	2.1	33	85	0	91	33	17	11	36	1.86
593865--593988	20	5.7	20	72	21	90	41	11	16	30	1.83
594904--595436	28	18.5	28	84	5	496	23	18	30	27	1.97
602242--602282	21	1.9	21	85	5	55	2	2	14	80	0.92
603425--603458	15	2.4	14	85	9	50	67	5	5	20	1.33
604131--604156	13	2.0	13	100	0	52	30	15	15	38	1.88
604111--604174	33	1.9	33	87	6	94	26	14	17	42	1.87
604228--604282	20	2.8	20	86	5	67	32	14	12	40	1.84
606535--606560	13	2.0	13	100	0	52	38	15	15	30	1.88
608778--608822	21	2.1	21	84	8	56	53	4	20	22	1.63
610626--610656	15	2.1	15	93	0	53	48	16	22	12	1.80
612736--612761	13	2.0	13	100	0	52	30	15	15	38	1.88
615308--615333	13	2.0	13	100	0	52	38	15	15	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
616654--616715	13	4.8	13	89	0	97	32	14	20	32	1.93
616654--616715	26	2.4	26	97	0	115	32	14	20	32	1.93
622905--622930	13	2.0	13	100	0	52	30	15	15	38	1.88
623002--623056	20	2.8	20	86	5	67	30	12	14	41	1.83
639008--639050	3	15.0	3	80	9	54	27	2	0	69	1.00
642414--642468	20	2.7	21	85	2	76	43	12	14	29	1.82
642491--642539	20	2.5	19	86	3	62	38	18	14	28	1.90
644130--644160	9	3.4	9	95	0	53	38	0	35	25	1.56
649043--649097	20	2.8	20	85	0	83	20	41	27	10	1.85
650386--650423	19	2.0	19	100	0	76	42	0	36	21	1.53
651164--651188	13	1.9	13	100	0	50	32	16	16	36	1.90
651144--651211	33	2.1	33	91	2	111	35	16	14	33	1.89
654030--654055	13	2.0	13	100	0	52	38	15	15	30	1.88
654012--654075	32	2.0	33	90	3	103	42	15	14	28	1.86
660373--660418	21	2.2	20	81	11	58	32	19	4	43	1.71
662769--662794	13	2.0	13	100	0	52	38	15	15	30	1.88
662751--662814	32	2.0	33	90	3	103	42	15	14	28	1.86
666517--666543	13	2.1	13	100	0	54	29	14	14	40	1.86
666528--666584	19	2.9	19	82	10	71	31	17	17	33	1.93
666633--666681	13	4.2	13	70	24	54	32	12	20	34	1.90
666615--666681	34	2.0	33	88	8	100	35	13	19	31	1.90
667567--667717	80	1.9	80	83	5	198	34	5	25	33	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
667678--667747	28	2.5	28	86	6	97	27	14	28	30	1.95
667618--667829	108	2.0	108	85	3	293	33	10	27	29	1.90
667706--668068	161	2.3	158	81	8	419	30	11	30	28	1.91
667707--668070	80	4.5	80	78	6	403	29	11	29	28	1.92
671794--671843	19	2.5	20	87	3	66	28	14	16	42	1.86
671901--671950	24	2.1	24	92	0	82	28	18	6	48	1.71
672417--672513	36	3.0	31	82	11	106	30	13	25	29	1.94
674076--674134	21	2.8	21	89	0	82	62	0	20	16	1.32
676163--676384	68	3.3	66	76	6	212	37	19	15	27	1.92
684638--684705	33	2.1	33	89	8	104	32	17	16	33	1.92
684774--684798	13	1.9	13	100	0	50	36	16	16	32	1.90
687275--687303	13	2.2	13	100	0	58	41	17	13	27	1.87
693432--693499	33	2.1	32	89	8	102	32	17	16	33	1.92
693568--693625	13	4.9	13	70	23	56	32	15	17	34	1.91
693581--693645	20	3.6	20	73	26	81	29	15	18	36	1.91
693551--693646	33	2.9	33	93	1	158	30	15	19	34	1.93
695044--695413	195	1.9	196	93	0	634	42	18	10	28	1.82
696825--696968	43	3.0	49	75	18	158	27	23	15	33	1.95
696901--697040	72	1.9	72	91	0	226	27	25	16	31	1.96
697057--697238	43	4.1	43	85	8	247	25	24	18	31	1.97
697005--697291	92	3.0	93	90	3	432	24	24	17	33	1.96
697192--697329	52	2.6	52	81	3	150	24	23	15	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
697295--697421	67	1.9	68	88	1	193	23	24	12	39	1.89
698233--698289	13	3.9	13	76	24	60	35	14	17	33	1.90
698213--698309	32	3.0	32	95	1	167	36	12	16	35	1.86
698211--698312	19	6.1	17	70	28	76	35	11	16	36	1.86
698384--698512	52	2.5	52	96	0	231	36	18	17	27	1.93
701746--701773	13	2.2	13	100	0	56	42	14	10	32	1.80
701818--701873	19	2.9	19	86	2	67	37	12	17	32	1.88
701827--701873	19	2.4	19	92	3	76	38	12	19	29	1.89
701858--701918	13	5.2	13	68	22	53	44	14	11	29	1.81
701870--701909	20	2.0	20	90	0	62	47	12	10	30	1.74
706915--706952	13	2.9	13	100	0	76	31	15	15	36	1.90
711183--711230	25	1.9	25	83	8	62	45	6	16	31	1.72
712847--712899	13	4.5	13	75	22	55	33	16	13	35	1.88
712847--712915	33	2.1	33	89	5	104	36	18	11	33	1.87
712944--713018	19	3.9	19	92	1	114	38	17	14	29	1.89
713003--713029	13	2.1	13	100	0	54	40	14	14	29	1.86
715507--715546	13	3.1	13	92	0	71	40	12	15	32	1.84
720984--721011	12	2.3	12	100	0	56	21	7	46	25	1.76
721231--721280	21	2.5	19	87	6	64	30	12	22	36	1.90
721231--721376	19	8.5	19	68	26	94	31	12	21	34	1.90
721272--721360	13	5.9	13	68	27	52	32	13	20	33	1.91
721253--721387	32	4.2	32	99	0	261	31	12	21	34	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
721252--721379	19	7.7	19	67	28	103	31	12	21	35	1.90
731735--731790	22	2.6	22	88	5	80	46	12	12	28	1.78
732589--733119	52	10.0	52	72	5	328	38	14	24	22	1.92
732587--733087	104	4.7	103	78	6	473	38	14	24	22	1.91
732568--733097	217	2.5	217	84	4	643	38	13	24	23	1.91
732903--733122	105	2.1	104	86	0	296	37	13	25	23	1.91
733124--733381	32	8.3	31	73	16	196	19	16	32	30	1.94
733135--733377	64	3.9	63	83	5	275	19	15	33	31	1.93
733124--733314	96	2.0	96	81	8	228	20	17	31	30	1.96
733115--733381	122	2.1	124	80	8	299	20	16	32	30	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14