genome.fa.s192.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold192
Parameters: 2 7 7 80 10 50 1000
Length:  2196177

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  6  of  14  ( 1592 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
889649--889678	13	2.3	13	100	0	60	40	13	16	30	1.87
890280--890382	41	2.5	41	84	7	120	43	9	27	19	1.82
890426--890575	42	3.5	43	87	8	225	37	14	26	22	1.92
890559--890818	61	4.3	60	78	11	275	28	19	25	26	1.99
890837--891136	55	5.3	55	78	8	309	25	20	25	28	1.99
890551--891438	320	2.7	324	85	6	1118	27	19	26	26	1.99
890998--891283	150	1.9	151	84	5	387	26	19	26	26	1.99
891154--891657	61	8.4	61	81	5	477	26	19	27	25	1.99
891261--891657	184	2.2	182	88	1	589	28	19	27	24	1.98
899318--899517	81	2.5	81	94	0	346	39	15	20	26	1.91
899282--899538	81	3.2	80	86	5	340	35	15	21	27	1.94
899520--899639	51	2.4	51	90	2	179	33	13	25	27	1.93
899444--899805	130	2.8	130	81	9	407	33	13	25	27	1.93
899569--899717	79	1.9	78	84	4	201	30	13	28	27	1.94
899647--899765	50	2.4	51	89	2	186	27	13	30	28	1.94
899480--899844	129	2.8	128	83	6	414	32	13	26	26	1.94
899698--899922	79	2.9	77	80	5	245	30	15	28	26	1.96
902252--902325	20	3.3	20	69	25	58	43	13	14	28	1.84
902844--902930	42	2.1	42	86	0	120	35	17	11	35	1.86
902857--902931	20	3.7	20	72	13	71	36	16	13	34	1.87
903747--903771	13	1.9	13	100	0	50	36	16	16	32	1.90
903724--903791	33	2.1	32	86	2	91	32	16	17	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
903824--903874	20	2.5	20	90	0	75	35	17	11	35	1.87
906126--906166	22	2.0	21	86	13	59	41	4	21	31	1.74
906130--906171	22	2.0	20	82	13	50	45	4	19	30	1.71
906298--906322	13	1.9	13	100	0	50	32	16	20	32	1.94
910846--910879	3	11.3	3	87	0	50	26	35	0	38	1.57
910846--910879	9	3.8	9	96	0	59	26	35	0	38	1.57
912561--912611	20	2.5	20	90	0	75	33	17	11	37	1.86
913298--913367	36	2.0	35	88	8	106	31	11	30	27	1.91
913824--913882	20	2.9	19	87	9	82	30	10	16	42	1.82
913825--913884	21	3.0	20	88	9	86	30	10	18	41	1.83
914671--914713	20	2.2	20	95	0	77	32	11	6	48	1.66
916454--916505	20	2.5	21	87	3	70	40	11	17	30	1.85
916507--916612	54	2.0	54	94	0	185	35	18	18	26	1.95
916606--916683	20	3.8	20	86	3	84	35	12	12	38	1.82
916629--916683	20	2.7	21	88	5	85	29	14	12	43	1.82
918963--919187	97	2.3	97	81	1	245	26	25	12	35	1.91
923523--923547	13	1.9	13	100	0	50	36	16	16	32	1.90
923503--923569	33	2.0	33	85	0	89	35	11	11	40	1.79
923613--923637	13	1.9	13	100	0	50	32	16	16	36	1.90
923626--923770	52	2.8	51	85	6	175	34	18	15	31	1.93
937206--937259	21	2.8	18	88	8	72	77	12	0	9	0.98
938503--938582	14	6.1	13	75	10	65	35	12	17	35	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
938606--938683	28	2.8	28	84	5	97	26	23	20	29	1.99
938761--938842	34	2.4	34	85	4	112	31	39	10	18	1.85
938828--938908	33	2.5	31	86	9	108	35	32	12	19	1.89
938828--938934	32	3.3	32	81	12	112	33	31	13	21	1.91
938934--939043	58	1.9	58	80	0	130	28	23	13	34	1.93
939190--939302	52	2.2	53	82	4	131	23	19	16	39	1.91
939188--939480	157	1.9	157	79	9	339	24	20	15	38	1.92
939265--939455	104	1.8	105	86	7	282	26	21	13	38	1.90
939261--939480	52	4.2	52	80	6	241	25	21	15	37	1.92
940115--940167	20	2.6	21	90	3	81	39	15	15	30	1.87
940972--941011	21	2.0	20	85	9	55	20	25	12	42	1.86
946046--946434	30	12.5	30	75	11	309	21	29	15	33	1.94
946046--946507	33	14.7	32	75	9	330	21	29	15	34	1.94
946042--946507	63	7.4	63	78	9	375	21	29	15	34	1.94
946046--946434	95	4.1	95	83	4	445	21	29	15	33	1.94
946054--946403	125	2.8	122	77	11	332	21	29	15	33	1.94
946080--946447	158	2.3	157	81	7	447	21	29	14	34	1.93
946046--946498	95	4.8	95	81	7	276	21	28	15	33	1.94
946919--946994	20	3.7	20	76	13	91	32	14	17	35	1.90
946906--946992	42	2.1	42	97	0	165	32	17	14	35	1.90
946906--946972	22	3.1	22	75	16	86	29	19	14	35	1.92
947431--947523	36	2.7	36	81	15	117	32	12	24	30	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
947805--948700	34	28.0	33	71	17	516	22	30	10	35	1.89
947805--948700	61	14.0	65	73	15	330	22	30	10	35	1.89
947971--948027	26	2.2	26	90	0	87	21	26	15	36	1.93
948066--948157	27	3.1	27	76	10	76	22	30	9	36	1.87
948159--948605	95	4.7	92	75	13	363	22	32	11	34	1.89
947873--948605	129	5.8	123	79	9	619	21	31	11	35	1.89
948356--948476	27	4.2	27	71	17	82	23	33	10	31	1.89
948288--948725	156	2.8	153	84	5	565	23	31	10	34	1.90
948514--948571	27	2.1	27	83	0	71	27	22	13	36	1.92
948572--948632	27	2.3	27	88	0	86	24	34	11	29	1.91
948549--948840	95	3.2	92	75	16	279	24	32	11	30	1.92
948668--948866	27	7.2	26	74	13	132	24	31	13	30	1.93
948668--948807	54	2.6	53	77	10	149	25	33	12	28	1.93
948749--948882	60	2.3	58	85	5	178	25	32	11	30	1.92
948995--949490	52	10.0	48	73	15	271	26	24	15	33	1.95
949066--949230	90	1.9	87	87	3	240	26	26	19	27	1.99
949143--949495	52	6.8	52	75	9	272	26	25	14	34	1.94
949013--949281	139	1.9	138	85	5	364	25	25	18	30	1.98
949143--949486	157	2.2	157	80	6	369	26	25	14	34	1.94
956177--956501	47	6.9	47	80	4	298	24	24	15	35	1.94
956598--956931	84	3.9	83	74	5	247	22	32	11	33	1.90
957716--957795	34	2.4	34	97	0	151	31	11	11	46	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
959172--959235	13	5.2	12	81	9	67	78	0	20	1	0.84
959179--959223	8	5.5	8	78	5	54	80	0	20	0	0.72
959175--959224	21	2.4	21	90	6	75	80	0	20	0	0.72
960307--960347	3	13.7	3	100	0	82	68	0	0	31	0.90
961651--961676	13	2.0	13	100	0	52	30	15	15	38	1.88
961660--961716	19	2.9	19	78	2	69	33	15	14	36	1.88
963999--964040	13	3.2	13	82	0	57	38	19	14	28	1.90
964035--964106	24	3.0	24	87	0	99	40	12	23	23	1.89
964168--964232	32	2.0	32	84	3	85	40	18	13	27	1.89
970520--970581	30	2.1	30	90	0	97	17	27	24	30	1.97
971876--971939	20	3.5	20	72	27	79	31	17	18	32	1.94
971877--971956	33	2.4	33	97	0	151	32	16	20	31	1.94
971897--971921	13	1.9	13	100	0	50	36	16	16	32	1.90
974836--974869	12	2.7	13	81	9	52	55	8	5	29	1.54
978383--978565	81	2.2	81	83	2	233	28	8	29	33	1.87
978516--978617	28	3.6	28	86	0	123	20	13	33	32	1.92
978441--978698	137	1.9	137	81	3	313	28	12	28	31	1.92
978365--978779	218	1.9	218	88	0	623	31	11	26	30	1.92
978578--979114	190	2.8	188	84	2	698	34	12	24	28	1.91
978793--978971	81	2.2	81	84	6	229	32	12	26	28	1.93
978926--978999	28	2.6	28	86	0	94	18	16	35	29	1.93
978874--979078	109	1.9	109	81	4	252	30	13	27	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
986838--986894	16	3.6	16	75	0	60	14	19	28	38	1.90
987760--987806	16	2.9	16	83	0	58	31	6	12	48	1.66
987855--987926	5	14.6	5	78	16	55	55	0	0	44	0.99
987858--987915	6	10.2	6	76	22	54	48	0	0	51	1.00
988354--988386	16	2.1	16	94	0	57	60	0	0	39	0.97
989193--989231	20	2.0	20	85	10	53	46	0	2	51	1.14
989545--989588	22	2.0	22	100	0	88	22	27	18	31	1.97
990616--990660	21	2.0	24	87	12	69	28	0	0	71	0.87
991551--991705	75	2.1	75	95	2	276	27	20	14	37	1.92
991834--991924	5	19.2	5	72	18	52	35	2	1	61	1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14