genome.fa.s192.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold192
Parameters: 2 7 7 80 10 50 1000
Length:  2196177

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  11  of  14  ( 1592 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1649326--1649765	158	2.8	155	82	5	490	30	22	9	37	1.86
1649326--1649761	79	5.5	79	79	5	416	29	22	9	38	1.86
1649705--1649815	51	2.2	51	83	1	134	30	18	9	40	1.84
1649643--1649876	129	1.8	130	83	2	319	31	18	8	41	1.80
1653176--1653214	20	2.0	20	84	0	51	69	0	23	7	1.14
1657372--1657673	149	2.0	149	83	5	378	26	16	18	38	1.91
1662359--1662383	13	1.9	13	100	0	50	32	16	16	36	1.90
1670776--1670924	52	2.9	51	86	4	217	31	17	17	33	1.93
1670913--1670937	13	1.9	13	100	0	50	36	16	16	32	1.90
1671000--1671024	13	1.9	13	100	0	50	32	16	16	36	1.90
1674833--1674858	13	2.0	13	100	0	52	38	15	15	30	1.88
1674815--1674878	33	2.0	32	90	3	101	39	20	14	26	1.90
1676756--1676967	66	3.2	65	76	7	194	28	16	13	41	1.87
1679418--1679445	2	14.0	2	100	0	56	50	0	0	50	1.00
1680385--1680416	5	6.4	5	92	0	55	37	0	3	59	1.13
1680388--1680419	15	2.1	15	100	0	64	31	0	6	62	1.20
1680990--1681826	48	17.4	48	78	6	635	25	48	4	21	1.68
1681108--1681137	15	2.0	15	93	0	51	20	56	0	23	1.42
1680987--1681792	144	5.6	144	81	4	786	25	49	4	21	1.67
1681671--1681982	162	1.9	163	92	0	518	26	49	5	18	1.68
1681755--1681886	66	2.0	66	79	8	144	29	46	5	18	1.71
1681821--1682224	96	4.2	95	83	6	415	25	48	4	20	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1681707--1681940	114	2.1	114	84	3	301	28	48	5	17	1.69
1681821--1682189	48	7.7	48	78	7	356	25	49	5	20	1.69
1681479--1682207	403	1.8	402	94	0	1307	25	49	5	19	1.69
1683516--1683556	16	2.5	17	84	11	50	43	2	2	51	1.28
1683938--1683980	15	2.9	15	80	13	54	34	0	0	65	0.93
1684067--1684109	7	6.3	7	83	5	52	58	0	0	41	0.98
1685597--1685641	20	2.3	21	81	14	60	53	2	0	44	1.13
1685597--1685642	19	2.3	20	85	10	60	54	2	0	43	1.12
1685597--1685660	18	3.4	18	76	20	51	57	1	0	40	1.08
1685609--1685667	6	9.5	6	81	7	73	61	1	0	37	1.07
1686442--1686482	13	3.2	12	83	16	55	58	0	2	39	1.11
1690217--1690246	13	2.3	13	100	0	60	63	13	16	6	1.50
1691015--1691043	2	14.5	2	100	0	58	51	0	0	48	1.00
1695905--1696191	153	1.9	149	83	2	367	26	13	17	42	1.86
1695905--1696247	152	2.3	150	80	5	386	27	12	17	41	1.86
1697930--1698096	20	8.8	20	75	13	102	30	13	13	43	1.82
1697920--1698055	71	1.9	71	89	0	209	29	13	11	44	1.80
1698002--1698096	40	2.4	40	91	3	156	30	13	13	42	1.83
1697917--1698146	91	2.5	95	78	12	239	30	14	12	42	1.83
1697930--1698146	111	2.0	111	85	1	301	30	14	13	41	1.84
1700479--1700547	20	3.6	19	79	9	68	37	14	8	39	1.77
1702369--1702403	6	5.7	6	96	3	61	17	0	0	82	0.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1702362--1702402	18	2.2	19	86	4	57	17	4	0	78	0.93
1705092--1705160	4	17.8	4	77	19	67	73	0	0	26	0.83
1705093--1705160	29	2.2	31	78	21	72	73	0	0	26	0.83
1705095--1705174	24	3.4	23	81	14	92	72	0	2	25	0.97
1708387--1708450	19	3.3	19	75	14	67	57	1	1	39	1.17
1708378--1708475	40	2.6	37	81	16	114	57	1	2	39	1.17
1709141--1709173	14	2.2	16	89	10	52	78	21	0	0	0.75
1712202--1712248	23	2.0	23	87	0	67	29	2	2	65	1.15
1713252--1713359	32	3.4	32	90	0	162	45	1	6	46	1.39
1717266--1717293	2	14.0	2	100	0	56	50	0	0	50	1.00
1717629--1717666	3	12.3	3	94	5	67	34	0	0	65	0.93
1717996--1718071	34	2.2	34	81	9	84	43	3	1	51	1.28
1732834--1732895	1	62.0	1	77	0	52	87	8	4	0	0.68
1732834--1732895	13	4.8	13	74	7	63	87	8	4	0	0.68
1732837--1732895	16	3.9	14	80	14	64	86	8	5	0	0.70
1736826--1737168	171	2.0	170	92	0	569	39	16	14	30	1.88
1738863--1738920	20	2.9	20	72	7	55	41	10	13	34	1.79
1738979--1739031	20	2.6	21	87	3	72	35	26	13	24	1.92
1749871--1750235	51	7.1	52	76	7	239	23	18	22	35	1.96
1749931--1750122	101	1.9	102	83	5	255	23	18	22	35	1.95
1750086--1750207	52	2.4	51	84	4	138	20	23	22	33	1.97
1749934--1750219	103	2.8	101	78	8	280	22	19	22	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1759622--1759667	21	2.2	21	84	0	56	32	17	19	30	1.95
1759711--1759740	13	2.3	13	94	0	51	33	16	10	40	1.82
1759773--1759862	20	4.8	20	74	20	79	27	18	13	40	1.88
1759793--1759821	13	2.2	13	100	0	58	31	17	13	37	1.89
1759773--1759842	33	2.1	33	94	0	122	25	20	14	40	1.90
1762168--1762333	51	3.3	51	79	3	183	29	23	13	33	1.93
1762320--1762393	28	2.6	28	86	0	103	21	31	21	25	1.98
1762311--1762549	109	2.2	109	85	4	315	26	25	16	31	1.96
1762426--1762499	28	2.6	28	81	6	78	24	28	21	25	1.99
1762485--1762602	51	2.3	50	87	7	175	30	27	12	28	1.93
1762535--1762765	79	2.9	78	79	3	273	26	26	14	32	1.95
1768920--1769187	61	4.4	61	87	2	367	26	26	18	27	1.98
1768920--1769187	123	2.2	122	90	2	412	26	26	18	27	1.98
1769226--1769585	61	5.9	61	87	2	492	26	30	19	24	1.98
1769596--1769707	55	2.0	55	91	0	179	27	29	20	22	1.98
1769469--1769868	155	2.6	153	81	9	461	25	26	19	28	1.98
1769653--1769831	100	1.8	96	82	7	227	25	26	20	27	1.99
1769785--1769906	61	2.0	61	85	3	165	28	25	16	29	1.97
1769897--1770014	45	2.7	43	80	13	143	21	27	10	40	1.85
1769945--1770037	42	2.2	41	81	11	107	21	22	9	46	1.80
1770787--1770849	13	5.3	13	75	21	66	33	15	9	41	1.80
1770767--1770849	33	2.5	33	92	0	130	32	15	8	43	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1770749--1770836	20	4.8	20	76	18	100	29	14	10	45	1.78
1770749--1770920	20	8.9	20	69	19	98	28	15	12	43	1.84
1770903--1770930	13	2.2	13	100	0	56	32	14	14	39	1.86
1770882--1770951	33	2.1	33	94	0	122	27	18	14	40	1.89
1773269--1773395	51	2.5	51	80	2	121	27	25	12	33	1.92
1773419--1773491	28	2.6	28	97	0	137	27	34	16	21	1.95
1773369--1773626	109	2.4	108	77	10	280	28	24	12	35	1.91
1773587--1773700	51	2.2	52	81	4	151	33	26	7	32	1.85
1773650--1773852	78	2.6	77	79	6	237	28	23	13	34	1.93
1773650--1773862	79	2.7	79	78	11	222	27	23	13	34	1.93
1775219--1775271	13	4.5	13	69	26	55	35	16	13	33	1.88
1775222--1775286	33	2.0	33	90	6	105	33	18	13	33	1.90
1775316--1775370	19	2.8	19	86	2	65	38	20	12	29	1.89
1775717--1775782	17	3.6	18	74	20	64	45	0	0	54	0.99
1775823--1775870	14	3.3	15	82	5	64	43	0	0	56	0.99
1776116--1776167	21	2.4	20	84	12	59	42	1	1	53	1.23
1776775--1776851	20	3.9	20	72	14	70	59	0	0	40	0.97
1776776--1776811	18	2.1	17	89	5	54	55	0	0	44	0.99
1776769--1776827	24	2.3	24	82	11	64	57	0	0	42	0.98
1776784--1776866	32	2.6	32	83	11	100	57	0	0	42	0.98
1776775--1776888	57	2.0	58	81	13	137	57	0	0	42	0.98
1777129--1777243	53	2.1	56	81	12	132	40	0	1	56	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1777830--1777893	25	2.6	25	97	0	119	48	0	4	46	1.23
1778333--1778374	18	2.4	17	84	7	57	66	2	0	30	1.04
1778333--1778379	21	2.2	21	77	7	51	65	2	0	31	1.04
1780217--1780260	12	3.8	12	93	6	81	52	6	0	40	1.28
1780340--1780375	18	2.1	17	89	5	54	61	0	0	38	0.96
1780847--1780951	53	2.0	53	81	7	124	41	5	13	39	1.68
1781044--1781105	29	2.1	29	81	0	70	29	0	8	62	1.23
1782133--1782175	19	2.3	19	88	8	61	48	9	6	34	1.62
1782795--1782914	60	2.0	60	91	3	197	42	10	25	21	1.84
1786481--1786525	3	15.0	3	95	0	81	64	0	2	33	1.06

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14