genome.fa.s192.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold192
Parameters: 2 7 7 80 10 50 1000
Length:  2196177

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  8  of  14  ( 1592 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1148156--1148330	79	2.2	79	82	2	208	28	26	13	32	1.93
1148370--1148620	79	3.2	79	82	4	265	25	22	15	36	1.94
1148190--1148534	180	1.9	180	80	3	408	26	23	15	34	1.95
1149816--1149878	23	2.7	22	81	16	65	41	0	3	55	1.16
1152086--1152115	13	2.2	14	94	5	53	33	13	16	36	1.88
1152066--1152134	32	2.1	33	91	2	113	33	11	17	37	1.86
1152205--1152333	52	2.5	52	97	0	240	34	17	17	29	1.94
1156138--1156162	13	1.9	13	100	0	50	40	4	8	48	1.51
1156419--1156573	69	2.2	69	89	0	229	37	9	22	30	1.85
1156512--1156786	96	2.9	93	77	9	277	34	10	24	30	1.89
1157323--1157438	55	2.2	53	81	7	135	56	15	17	10	1.66
1158868--1159027	85	1.9	85	84	2	214	39	14	29	16	1.88
1159154--1159379	62	3.7	62	77	10	189	37	14	25	22	1.92
1159196--1159429	121	1.9	120	84	4	310	36	13	25	23	1.92
1159172--1159377	60	3.4	60	76	8	184	36	15	25	22	1.93
1159519--1161177	30	57.1	28	82	6	1796	21	15	32	29	1.95
1159519--1161177	58	28.6	56	82	6	1796	21	15	32	29	1.95
1165886--1166507	49	13.1	49	77	11	582	32	17	25	24	1.97
1165952--1166512	92	6.0	92	89	3	798	32	17	25	24	1.97
1166500--1166640	32	4.5	32	87	6	200	19	17	35	27	1.94
1166668--1166852	34	5.7	34	77	10	215	32	12	36	18	1.89
1166592--1166886	128	2.3	126	79	8	346	30	13	33	21	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1166667--1166856	61	3.0	61	84	8	272	31	12	35	20	1.90
1166828--1166886	29	2.0	30	90	3	93	27	15	32	25	1.95
1169853--1169934	28	2.9	28	83	7	96	25	17	32	24	1.96
1169917--1170086	52	3.3	51	80	2	205	32	11	24	31	1.91
1170069--1170144	27	2.8	28	87	2	100	19	21	35	23	1.96
1172546--1172612	33	2.0	33	85	0	89	43	14	14	26	1.85
1172632--1172699	19	3.9	18	76	23	83	38	14	11	35	1.83
1172654--1172678	13	1.9	13	100	0	50	32	16	16	36	1.90
1172635--1172697	32	2.0	32	96	0	117	36	15	12	34	1.86
1173478--1174010	55	9.4	55	84	9	626	23	20	29	27	1.99
1173477--1174014	116	4.7	115	91	4	776	23	19	29	26	1.99
1173477--1173980	171	3.0	167	84	7	639	23	20	28	27	1.99
1178083--1178108	13	2.0	13	100	0	52	38	15	15	30	1.88
1178062--1178128	33	2.0	33	88	0	98	43	16	14	25	1.86
1178148--1178215	19	3.9	18	76	23	83	38	14	11	35	1.83
1178170--1178194	13	1.9	13	100	0	50	32	16	16	36	1.90
1178151--1178213	32	2.0	32	96	0	117	36	15	12	34	1.86
1178251--1178327	21	3.7	21	89	3	111	35	16	12	35	1.88
1191760--1191817	22	2.7	21	75	19	57	34	18	15	31	1.93
1200610--1201140	54	9.4	55	83	10	596	23	20	28	27	1.99
1200609--1201139	115	4.7	115	88	6	711	23	20	28	27	1.99
1205203--1205228	13	2.0	13	100	0	52	38	15	15	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1205182--1205248	33	2.0	33	88	0	98	43	16	14	25	1.86
1205268--1205335	19	3.9	18	76	23	83	38	14	11	35	1.83
1205290--1205314	13	1.9	13	100	0	50	32	16	16	36	1.90
1205271--1205333	32	2.0	32	96	0	117	36	15	12	34	1.86
1205371--1205447	21	3.7	21	89	3	111	35	16	12	35	1.88
1218983--1219111	52	2.5	52	93	0	222	28	17	17	36	1.93
1219155--1219216	32	2.0	32	93	3	108	40	17	9	32	1.82
1219892--1219924	13	2.5	13	86	13	50	0	12	9	78	0.95
1220145--1220191	22	2.2	21	88	3	67	8	8	6	76	1.15
1220152--1220199	22	2.2	22	85	7	62	6	10	10	72	1.26
1220169--1220226	27	2.1	27	84	6	73	6	10	12	70	1.33
1221118--1221178	30	2.0	31	81	15	74	32	9	31	26	1.89
1223372--1223522	69	2.2	69	85	0	203	38	12	17	31	1.87
1223470--1223730	96	2.7	96	76	8	262	34	11	22	31	1.89
1225273--1225310	3	12.7	3	100	0	76	31	0	0	68	0.90
1225303--1225350	16	3.1	15	85	8	60	20	0	4	75	0.97
1225744--1225788	18	2.4	19	81	11	56	62	0	20	17	1.33
1226178--1226251	30	2.4	30	84	2	94	25	10	2	60	1.43
1226236--1226274	15	2.6	15	79	0	51	23	15	7	53	1.67
1226707--1226794	43	2.0	43	85	8	117	38	10	10	40	1.73
1227954--1228019	30	2.2	30	88	0	105	50	4	21	24	1.67
1233639--1233710	24	3.0	24	93	2	128	52	0	4	43	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1233896--1233948	22	2.4	22	90	0	79	41	13	1	43	1.54
1237377--1237434	30	1.9	30	89	0	89	32	12	13	41	1.82
1239570--1239619	18	2.8	18	81	6	57	34	6	2	58	1.34
1247565--1247877	79	4.0	79	76	9	237	33	15	24	26	1.95
1247702--1247878	77	2.3	79	82	6	209	32	16	25	25	1.96
1247562--1247868	156	2.0	158	80	6	347	33	15	24	26	1.95
1247836--1247910	28	2.7	28	91	0	114	25	20	32	22	1.98
1250379--1250422	21	2.1	21	91	0	70	34	15	15	34	1.90
1250948--1251050	41	2.6	39	82	8	118	43	10	28	17	1.82
1251037--1251689	88	7.4	87	77	10	487	40	13	26	19	1.88
1251037--1251689	43	14.8	43	75	15	464	40	13	26	19	1.88
1251054--1251689	134	4.8	133	86	2	827	39	13	27	19	1.89
1251736--1251926	45	4.3	45	73	10	160	38	13	27	20	1.90
1251870--1252090	104	2.1	105	90	0	345	28	19	29	23	1.98
1252012--1252900	62	14.4	60	84	5	1021	30	19	25	25	1.98
1252012--1252900	123	7.2	123	84	4	1053	30	19	25	25	1.98
1252011--1252899	248	3.6	246	86	3	1164	30	19	25	25	1.98
1255718--1255760	20	2.2	20	83	4	52	60	11	9	18	1.57
1256247--1256765	28	17.7	31	75	14	216	23	18	28	28	1.98
1256304--1256779	234	2.1	228	82	5	575	23	18	29	28	1.97
1256611--1256831	29	7.7	29	83	6	202	23	18	28	29	1.98
1256304--1256839	86	6.2	83	76	10	434	23	18	29	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1256306--1256839	28	18.6	28	77	8	423	23	18	29	28	1.98
1258124--1258173	21	2.3	21	89	3	73	0	0	16	84	0.63
1261044--1261081	15	2.6	14	88	12	58	68	0	0	31	0.90
1261612--1261671	32	1.9	32	83	12	81	41	0	0	58	0.98
1264304--1264375	29	2.5	28	76	8	83	44	0	0	55	0.99
1264331--1264370	20	1.9	22	90	10	66	37	0	0	62	0.95
1265890--1265928	20	2.0	20	89	0	60	35	5	46	12	1.65
1266012--1266082	27	2.6	27	86	6	90	46	21	7	25	1.76
1267974--1268019	21	2.1	22	84	4	58	19	30	19	30	1.97
1270470--1270517	20	2.4	20	82	0	60	41	4	43	10	1.58
1270599--1270664	27	2.4	27	87	2	87	46	19	7	25	1.76
1270713--1270771	17	3.5	16	76	23	59	57	1	0	40	1.09
1270749--1270836	24	3.5	23	73	19	70	47	1	0	51	1.08
1270755--1270836	14	6.3	13	71	18	64	46	1	0	52	1.08
1270779--1270853	28	2.7	29	83	8	93	41	1	0	57	1.07
1271315--1271349	16	2.2	16	90	10	54	34	0	0	65	0.93
1275205--1275230	2	13.0	2	100	0	52	50	0	0	50	1.00
1275351--1275403	23	2.3	23	83	0	61	39	9	7	43	1.65
1275824--1275921	49	2.0	49	93	0	169	25	12	20	41	1.87
1280386--1280421	2	18.0	2	100	0	72	50	0	0	50	1.00
1281348--1281382	16	2.2	16	89	0	52	22	0	17	60	1.37
1281379--1281430	16	3.2	16	78	10	61	21	13	21	44	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1281385--1281431	16	2.9	16	83	0	67	21	12	21	44	1.85
1281416--1281538	53	2.3	54	83	6	144	28	14	19	37	1.91
1282255--1282316	16	3.8	17	81	8	76	17	17	27	37	1.93
1282834--1283168	136	2.5	133	86	7	460	53	1	2	41	1.25
1282834--1283168	135	2.5	135	88	4	480	53	1	2	41	1.25
1283434--1283990	183	3.1	178	82	7	622	42	6	15	35	1.74
1283434--1283990	181	3.1	181	82	6	621	42	6	15	35	1.74
1283485--1283996	87	5.7	88	76	9	354	42	6	16	34	1.74
1288448--1288486	19	2.1	19	100	0	78	41	15	23	20	1.90
1289724--1289855	42	3.1	42	89	2	185	8	44	2	44	1.46

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14