genome.fa.s192.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold192
Parameters: 2 7 7 80 10 50 1000
Length:  2196177

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  9  of  14  ( 1592 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1290605--1290631	14	1.9	14	100	0	54	7	7	7	77	1.12
1295033--1295096	23	2.7	24	79	9	69	62	1	1	34	1.14
1295199--1295445	130	1.9	129	88	5	374	41	2	2	54	1.23
1296121--1296322	99	2.0	101	84	6	268	42	4	9	44	1.57
1299241--1299298	29	2.0	30	89	3	91	22	1	5	70	1.16
1303609--1303653	22	2.0	22	91	0	72	57	6	15	20	1.60
1304902--1304957	20	2.7	21	81	10	71	28	14	10	46	1.78
1308382--1308488	53	2.0	52	94	1	187	29	17	17	34	1.94
1308388--1308508	53	2.3	52	88	4	181	31	17	19	32	1.95
1308497--1308521	13	1.9	13	100	0	50	36	16	16	32	1.90
1308562--1308628	33	2.0	33	88	0	98	40	14	11	32	1.83
1308584--1308608	13	1.9	13	100	0	50	32	16	16	36	1.90
1309415--1309541	67	1.9	68	85	4	177	39	12	24	23	1.89
1309491--1310055	49	11.6	52	81	10	442	31	17	26	24	1.97
1309554--1310055	49	10.5	49	85	6	672	30	18	26	24	1.98
1310151--1310218	35	2.0	34	85	2	91	39	10	29	20	1.86
1310198--1310367	30	5.9	29	83	4	175	20	17	32	28	1.96
1310358--1311151	34	25.2	33	74	15	614	30	13	35	20	1.91
1310402--1311034	65	9.9	63	79	11	541	31	13	35	19	1.91
1310358--1311092	284	2.6	284	91	4	1134	30	13	34	20	1.91
1310402--1311155	125	5.9	124	78	12	657	30	13	35	20	1.91
1311186--1311614	62	6.9	61	80	9	449	30	17	28	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1311278--1311589	64	4.9	64	83	10	401	31	16	28	23	1.96
1311278--1311589	126	2.5	126	95	2	547	31	16	28	23	1.96
1312535--1312577	16	2.6	16	88	7	59	0	6	9	83	0.80
1319732--1319856	52	2.4	52	91	2	207	28	18	18	34	1.95
1319732--1319876	52	2.8	51	86	4	193	30	17	18	33	1.95
1319865--1319889	13	1.9	13	100	0	50	36	16	16	32	1.90
1319930--1319996	33	2.0	33	88	0	98	40	14	11	32	1.83
1319952--1319976	13	1.9	13	100	0	50	32	16	16	36	1.90
1321777--1321838	20	3.2	20	86	11	92	33	17	12	35	1.88
1321777--1321832	19	2.9	18	89	10	85	33	17	14	33	1.90
1322253--1322345	45	2.1	45	97	0	177	25	18	11	44	1.84
1324252--1324293	21	2.0	21	81	9	50	42	0	26	30	1.55
1324423--1324449	13	2.1	13	100	0	54	40	14	14	29	1.86
1330613--1330666	20	2.7	20	91	5	83	37	20	11	31	1.88
1330695--1330750	20	2.8	20	86	2	78	35	17	12	33	1.88
1330735--1330761	13	2.1	13	100	0	54	40	14	14	29	1.86
1330716--1330779	32	2.0	32	87	3	92	39	15	14	31	1.87
1338492--1338604	28	4.1	28	82	2	129	24	33	13	28	1.93
1338660--1339505	31	26.6	31	78	11	623	29	30	15	23	1.96
1338662--1339532	64	13.7	63	79	10	646	29	30	16	23	1.96
1338662--1339515	95	8.9	95	80	7	765	29	30	16	23	1.96
1339519--1339588	31	2.2	32	87	2	97	31	27	14	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1339715--1339837	52	2.4	52	81	2	131	26	20	16	37	1.93
1339957--1340074	61	1.9	61	83	6	150	27	23	13	35	1.92
1341500--1341525	13	2.0	13	100	0	52	30	15	15	38	1.88
1343856--1343902	21	2.3	21	76	23	55	42	4	19	34	1.70
1344023--1344061	13	3.0	13	96	0	69	35	15	17	30	1.91
1344047--1344125	20	3.7	20	78	15	77	44	15	15	25	1.85
1346135--1346172	15	2.4	16	82	8	51	15	18	18	47	1.83
1347975--1348019	21	2.1	21	84	8	56	22	20	4	53	1.63
1350724--1350779	20	2.7	21	86	10	80	37	14	19	28	1.91
1350824--1350879	20	2.7	21	83	2	78	30	16	10	42	1.82
1353758--1353801	2	22.0	2	100	0	88	50	0	0	50	1.00
1354580--1354614	18	1.9	18	88	0	52	74	0	8	17	1.06
1356235--1356259	6	4.2	6	100	0	50	36	0	0	64	0.94
1358915--1358975	24	2.5	22	92	7	77	22	8	18	50	1.73
1358922--1358975	24	2.2	24	100	0	108	20	7	20	51	1.70
1365334--1365400	33	2.0	33	88	0	98	34	11	13	40	1.81
1365354--1365378	13	1.9	13	100	0	50	36	16	16	32	1.90
1365441--1365465	13	1.9	13	100	0	50	32	16	16	36	1.90
1365474--1365589	52	2.2	52	95	1	207	34	18	17	30	1.93
1368921--1368958	2	19.0	2	88	0	58	44	0	2	52	1.14
1371734--1371770	16	2.4	16	90	4	58	75	0	10	13	1.04
1371742--1371824	37	2.2	38	84	6	105	77	0	12	10	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1375087--1375199	52	2.2	51	82	1	127	45	11	15	27	1.81
1377802--1378133	166	2.0	166	83	2	425	29	10	9	51	1.66
1378776--1378823	12	3.8	13	86	13	57	83	0	14	2	0.74
1378776--1378811	18	2.0	18	88	0	54	83	0	16	0	0.65
1378780--1378823	20	2.2	20	91	0	70	84	0	13	2	0.73
1379610--1379991	155	2.4	156	87	2	525	35	12	12	40	1.79
1383665--1383727	22	2.8	23	83	9	76	34	1	0	63	1.04
1384328--1384369	2	21.0	2	85	9	50	45	0	47	7	1.30
1384504--1384547	2	22.0	2	100	0	88	50	0	0	50	1.00
1385313--1385349	12	3.2	12	92	7	60	75	0	16	8	1.02
1390656--1390699	3	14.7	3	100	0	88	34	0	0	65	0.93
1390826--1390855	3	10.0	3	92	0	51	30	3	0	66	1.07
1396515--1396551	19	1.9	19	94	0	65	32	35	2	29	1.72
1396523--1396560	19	2.0	19	89	0	58	34	39	2	23	1.69
1400064--1400138	28	2.7	28	72	19	75	26	24	28	21	1.99
1400203--1400380	51	3.5	51	76	12	161	36	12	22	28	1.90
1402707--1402765	20	2.9	21	82	7	77	40	10	16	32	1.82
1402746--1402776	13	2.4	13	94	0	53	38	12	16	32	1.86
1402727--1402796	33	2.1	33	97	0	131	41	10	18	30	1.83
1402707--1402814	53	2.0	53	85	3	146	40	11	18	29	1.85
1402760--1402814	20	2.8	20	91	0	83	41	10	20	27	1.85
1402832--1402861	13	2.3	13	94	0	51	40	10	16	33	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1403622--1403950	42	7.6	42	76	6	316	41	10	24	22	1.86
1403629--1403950	87	3.7	87	88	0	455	42	9	24	22	1.84
1403622--1403950	174	1.9	175	89	0	516	41	10	24	22	1.86
1403929--1404403	61	7.9	60	84	7	556	28	19	25	26	1.99
1403929--1404403	183	2.6	174	85	6	630	28	19	25	26	1.99
1404247--1404330	27	3.1	27	66	16	64	26	21	27	25	1.99
1404227--1404306	27	2.9	28	67	17	69	23	22	26	27	2.00
1404227--1404421	55	3.4	55	83	9	248	27	20	25	26	1.99
1404347--1404520	94	1.8	95	90	1	278	27	20	25	27	1.99
1404442--1404631	55	3.5	55	82	2	229	25	21	25	28	1.99
1405716--1405767	9	5.8	9	76	15	54	0	3	9	86	0.69
1405701--1405767	30	2.2	30	84	5	82	0	8	7	83	0.81
1405715--1405768	17	3.0	18	81	13	67	0	3	11	85	0.73
1405715--1405759	20	2.3	20	92	3	74	0	4	8	86	0.69
1409121--1409215	51	1.9	48	83	10	120	41	6	21	31	1.78
1409259--1409398	51	2.7	51	74	4	138	36	12	21	30	1.90
1411718--1411812	20	4.7	20	89	6	138	44	10	15	29	1.80
1412406--1412465	23	2.5	24	76	12	61	63	1	3	31	1.20
1412736--1412795	20	3.2	19	75	13	54	55	0	3	41	1.16
1412715--1412786	27	2.7	27	69	26	64	55	0	4	40	1.19
1412747--1412802	20	2.6	23	72	18	57	53	0	3	42	1.18
1413825--1413882	24	2.4	24	88	0	80	46	10	25	17	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1416071--1416105	18	2.0	17	88	5	52	31	2	8	57	1.44
1418023--1418066	2	22.5	2	95	4	81	50	0	0	50	1.00
1421850--1421882	13	2.5	13	95	5	57	48	9	6	36	1.60
1424636--1424684	23	2.1	23	100	0	98	53	12	8	26	1.66
1425113--1425165	27	2.0	27	85	7	72	26	7	16	49	1.73
1426016--1426100	2	43.0	2	87	9	77	47	9	0	43	1.35
1426620--1426668	3	16.3	3	100	0	98	32	0	0	67	0.91
1428934--1428997	28	2.3	28	84	15	80	64	4	4	26	1.33
1431370--1431493	20	5.7	20	70	20	97	31	15	11	41	1.82
1434926--1435092	41	4.1	41	76	7	142	35	14	11	38	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14