genome.fa.s192.2.7.7.80.10.50.1000.12.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold192
Parameters: 2 7 7 80 10 50 1000
Length:  2196177

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  12  of  14  ( 1592 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1786679--1786904	113	2.0	113	95	0	407	44	9	6	39	1.62
1792483--1792525	21	2.0	21	95	0	77	13	41	18	25	1.88
1796718--1796771	26	2.1	26	100	0	108	44	22	7	25	1.79
1802015--1802191	87	2.0	87	94	2	311	34	15	8	41	1.78
1808558--1808582	13	1.9	13	100	0	50	32	16	16	36	1.90
1811415--1811513	30	3.5	30	68	16	93	14	22	43	20	1.87
1811404--1811538	54	2.5	54	97	0	252	14	20	42	22	1.88
1811454--1811537	24	3.2	24	66	18	69	11	19	45	23	1.83
1812025--1812123	5	19.8	5	88	0	117	50	7	21	21	1.72
1812013--1812103	15	6.2	15	88	2	123	50	7	20	20	1.73
1812017--1812123	35	3.1	35	93	1	171	50	7	21	20	1.72
1812132--1812251	22	5.5	22	66	25	85	45	9	20	25	1.80
1812135--1812277	43	3.3	43	99	0	277	46	9	18	25	1.78
1812156--1812272	21	5.5	21	64	25	66	45	9	20	24	1.81
1818021--1818059	18	2.1	19	85	4	53	66	0	0	33	0.92
1825085--1825136	23	2.3	21	76	23	52	34	17	3	44	1.67
1825318--1825356	20	1.9	21	89	5	62	51	0	0	48	1.00
1825541--1825614	29	2.6	29	80	6	80	36	0	1	62	1.04
1825558--1825607	15	3.4	14	79	17	57	34	0	0	66	0.92
1826227--1826256	15	1.9	16	93	6	53	50	0	0	50	1.00
1826806--1826850	23	2.0	23	86	8	65	37	8	8	44	1.67
1828812--1828882	36	2.0	36	81	13	85	49	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1828864--1828962	49	2.0	50	96	3	184	43	4	4	48	1.40
1830832--1830865	17	2.0	17	94	0	59	47	2	23	26	1.66
1832272--1832314	11	3.8	11	87	3	59	2	23	6	67	1.27
1832284--1832324	21	1.9	22	90	5	66	0	19	4	75	0.98
1832919--1832985	21	3.2	21	78	2	73	37	11	13	37	1.82
1836598--1836975	79	4.8	79	79	6	351	28	22	12	36	1.90
1841711--1841769	20	3.0	20	92	0	100	37	16	13	32	1.88
1841798--1841851	20	2.7	19	83	11	65	29	14	20	35	1.93
1850481--1850531	20	2.5	20	87	6	68	35	15	13	35	1.87
1853204--1853257	26	2.1	26	96	0	99	46	11	27	14	1.79
1860770--1860819	23	2.2	22	85	3	64	64	4	0	32	1.12
1864968--1865022	21	2.7	21	86	8	69	40	12	14	32	1.84
1874023--1874061	17	2.4	17	91	4	62	56	10	15	17	1.66
1880588--1880706	52	2.3	51	80	7	123	25	24	15	35	1.94
1880948--1881085	32	4.2	33	81	7	138	31	33	15	20	1.93
1881507--1881708	61	3.3	60	77	8	194	24	27	11	36	1.90
1882311--1882385	21	3.7	21	70	10	57	41	12	16	30	1.84
1882329--1882383	19	2.8	20	81	13	69	40	12	16	30	1.86
1886463--1886512	22	2.2	22	83	16	59	62	0	2	36	1.07
1888322--1888347	12	2.2	12	100	0	52	50	7	7	34	1.60
1888522--1888736	114	1.9	114	82	6	276	43	10	5	40	1.61
1889444--1889546	51	2.0	51	96	0	188	37	24	20	17	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1894982--1895013	12	2.8	12	90	9	50	53	9	0	37	1.34
1897942--1897981	21	1.9	21	94	0	71	35	7	17	40	1.78
1903933--1904081	52	2.9	51	87	4	226	30	16	18	33	1.94
1904070--1904094	13	1.9	13	100	0	50	36	16	16	32	1.90
1904135--1904201	33	2.0	33	88	0	98	40	14	11	32	1.83
1904157--1904181	13	1.9	13	100	0	50	32	16	16	36	1.90
1907233--1907292	19	3.3	19	81	13	72	48	0	0	51	1.00
1909160--1909197	19	2.0	19	89	0	58	47	0	0	52	1.00
1909219--1909276	28	2.0	29	86	3	82	51	0	0	48	1.00
1911584--1911619	5	7.8	5	90	9	51	0	11	0	88	0.50
1911583--1911619	9	4.1	9	90	10	58	0	10	0	89	0.49
1911583--1911619	19	2.1	17	90	10	56	0	10	0	89	0.49
1911583--1911619	14	2.8	13	88	8	56	0	10	0	89	0.49
1912866--1912917	14	3.4	14	72	23	50	50	0	0	50	1.00
1912851--1912932	33	2.5	33	76	11	96	43	0	0	56	0.99
1912927--1912969	14	3.1	14	80	3	52	34	0	0	65	0.93
1916964--1917036	15	4.8	16	76	17	66	38	0	2	58	1.12
1917535--1917606	23	3.1	23	78	11	76	33	0	0	66	0.92
1917507--1917610	39	2.6	39	79	13	97	36	0	0	62	1.02
1917548--1917627	30	2.7	30	83	12	112	33	0	0	66	0.92
1917548--1917628	19	4.0	22	74	20	79	33	0	0	66	0.92
1917548--1917636	30	3.1	30	81	13	107	33	0	1	65	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1917554--1917630	39	2.0	39	82	9	97	29	0	0	70	0.88
1921147--1921179	17	2.0	17	88	5	50	15	6	6	72	1.24
1921927--1921957	15	2.1	15	93	0	53	64	0	19	16	1.29
1921951--1921989	2	19.5	2	100	0	78	51	0	0	48	1.00
1922695--1922790	48	2.0	48	93	0	165	36	18	17	27	1.94
1923521--1923549	6	4.8	6	100	0	58	0	65	0	34	0.93
1924883--1924912	2	15.0	2	100	0	60	50	0	0	50	1.00
1925549--1925601	20	2.5	22	79	14	67	56	3	0	39	1.17
1925504--1925606	30	3.5	28	77	16	77	53	1	0	43	1.18
1926731--1926785	25	2.2	24	75	15	58	61	0	0	38	0.96
1929045--1929094	23	2.2	23	82	10	59	38	10	0	52	1.35
1929074--1929127	21	2.7	20	80	8	65	46	11	0	42	1.39
1930558--1930596	20	2.0	19	85	5	51	48	0	0	51	1.00
1931000--1931108	57	1.9	57	94	0	191	11	17	14	55	1.68
1938115--1938139	13	1.9	13	100	0	50	56	4	16	24	1.57
1939010--1939034	4	6.2	4	100	0	50	52	24	24	0	1.48
1940508--1940541	2	17.0	2	100	0	68	50	0	0	50	1.00
1942549--1942671	42	3.0	42	71	13	105	53	0	1	44	1.10
1942889--1942992	44	2.4	43	74	12	99	51	0	0	48	1.00
1943249--1943286	16	2.4	16	90	0	58	84	0	15	0	0.63
1944555--1944601	15	3.4	15	75	19	57	40	0	0	59	0.97
1944549--1944601	27	2.1	24	86	10	70	37	0	0	62	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1944602--1944637	15	2.5	14	86	8	54	63	0	0	36	0.94
1944600--1944637	14	2.7	15	88	11	55	60	0	0	39	0.97
1945599--1945680	32	2.6	32	82	1	94	53	9	10	25	1.66
1945872--1945915	23	1.9	23	86	9	63	43	4	2	50	1.35
1948187--1948395	79	2.6	79	82	4	244	29	16	29	25	1.97
1948404--1949050	51	12.4	51	70	10	369	31	12	26	29	1.93
1948294--1949060	262	2.9	262	94	0	1318	31	13	26	28	1.93
1951428--1951453	13	2.0	13	100	0	52	38	15	15	30	1.88
1951506--1951568	19	3.7	18	76	24	73	36	17	12	33	1.88
1951499--1951570	32	2.2	32	97	0	135	36	16	12	34	1.87
1951525--1951549	13	1.9	13	100	0	50	32	16	16	36	1.90
1953324--1953362	13	2.9	13	88	3	51	0	12	0	87	0.55
1953319--1953357	14	2.6	15	88	12	62	2	10	0	87	0.65
1954744--1954972	32	7.1	33	80	6	229	27	17	27	27	1.97
1954745--1955773	29	35.1	29	77	9	622	26	15	29	28	1.96
1954753--1955670	149	6.2	144	75	10	613	25	16	28	29	1.97
1955547--1955747	28	7.2	28	83	4	246	31	12	30	25	1.92
1955536--1955770	56	4.2	56	82	5	269	28	13	31	26	1.94
1955554--1955746	82	2.3	83	88	1	271	30	12	30	26	1.93
1955987--1956016	13	2.4	12	94	5	51	46	10	16	26	1.78
1957423--1957463	2	20.5	2	94	0	73	51	2	0	46	1.14
1957839--1957881	20	2.1	21	87	12	63	0	25	0	74	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1957842--1957875	17	2.0	17	88	11	52	0	26	0	73	0.83
1964976--1965104	52	2.5	52	96	0	240	28	18	17	34	1.94
1965113--1965137	13	1.9	13	100	0	50	36	16	16	32	1.90
1966687--1966768	29	2.8	29	73	12	78	26	10	10	51	1.70
1966489--1966771	59	4.8	59	83	1	300	26	11	14	46	1.79
1966968--1967264	78	3.9	77	71	15	220	33	10	17	38	1.84
1968692--1968747	23	2.6	21	74	5	58	42	0	3	53	1.18
1969323--1969372	23	2.3	21	93	6	82	52	4	0	44	1.20
1974370--1974402	9	3.8	9	84	8	50	57	0	0	42	0.98
1974357--1974426	35	2.0	35	81	15	83	55	0	0	44	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14