genome.fa.s192.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold192
Parameters: 2 7 7 80 10 50 1000
Length:  2196177

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  3  of  14  ( 1592 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
337635--337981	32	11.0	32	77	11	261	39	12	28	19	1.88
337805--338039	65	3.7	64	81	9	243	39	11	27	21	1.88
338057--338214	30	5.3	30	80	4	133	31	15	28	25	1.95
338090--338221	59	2.2	60	82	5	151	34	14	26	24	1.94
339052--339098	17	2.9	16	78	9	51	4	6	8	80	1.00
348543--348573	15	2.1	15	93	0	53	48	16	22	12	1.80
350652--350677	13	2.0	13	100	0	52	30	15	15	38	1.88
351084--351108	13	1.9	13	100	0	50	36	16	16	32	1.90
351193--351373	52	3.5	52	97	0	335	34	18	17	28	1.94
355482--355508	10	2.7	10	100	0	54	0	0	22	77	0.76
365194--365330	1	137.0	1	75	0	121	87	10	0	0	0.62
365195--365330	19	7.3	18	81	13	152	87	11	0	0	0.62
365193--365330	9	14.8	9	80	15	156	86	11	0	0	0.64
365194--365330	56	2.4	59	85	8	187	87	10	0	0	0.62
366756--366900	30	5.1	29	83	8	172	30	31	17	20	1.96
366891--367068	52	3.5	52	77	15	203	24	25	15	33	1.95
366906--366995	43	2.1	43	93	0	153	26	24	17	31	1.97
366949--367343	171	2.3	171	91	1	637	24	24	14	37	1.92
368161--368185	13	1.9	13	100	0	50	36	16	16	32	1.90
368268--368448	52	3.5	52	97	0	335	34	18	17	28	1.94
371520--371565	21	2.2	20	81	11	58	32	19	4	43	1.71
373941--373966	13	2.0	13	100	0	52	38	15	15	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
387355--387388	15	2.3	15	94	0	59	29	26	0	44	1.55
388949--389018	33	2.1	32	84	10	88	38	17	11	32	1.85
389507--389570	13	4.5	13	73	21	56	32	15	17	34	1.91
389488--389562	32	2.3	32	93	0	123	36	13	17	33	1.88
389616--389640	13	1.9	13	100	0	50	32	16	16	36	1.90
394983--395016	14	2.5	13	86	13	50	82	17	0	0	0.67
395336--395369	13	2.6	13	100	0	68	88	11	0	0	0.52
395334--395370	17	2.2	16	90	4	56	89	10	0	0	0.49
396335--396397	32	2.0	32	87	0	90	23	28	17	30	1.97
396372--396763	34	12.0	33	76	11	371	20	32	12	34	1.90
396434--396649	27	7.0	28	69	19	94	20	34	13	31	1.92
396401--396595	63	3.1	62	79	13	227	20	32	12	34	1.90
396349--396717	96	3.8	95	77	13	271	20	31	13	33	1.92
396758--397043	32	8.9	32	85	4	382	29	34	18	18	1.94
396758--397043	65	4.5	65	85	6	379	29	34	18	18	1.94
396760--397043	97	3.0	97	92	2	468	29	33	18	18	1.95
397049--397619	49	11.6	49	81	9	635	23	25	18	32	1.97
397284--397679	52	7.8	51	81	6	435	23	25	17	32	1.96
397139--397585	101	4.5	101	88	5	651	23	25	18	33	1.97
397049--397626	246	2.4	239	85	6	743	23	25	18	32	1.97
397284--397678	151	2.6	151	84	3	486	24	25	17	32	1.96
398367--398418	19	2.7	19	90	0	86	36	13	17	32	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
398406--398430	13	1.9	13	100	0	50	36	16	16	32	1.90
398387--398456	31	2.2	32	92	2	115	31	15	18	34	1.92
398501--398525	13	1.9	13	100	0	50	32	16	16	36	1.90
398534--398662	52	2.5	52	92	0	222	36	19	17	27	1.94
399741--399768	13	2.2	13	100	0	56	42	7	28	21	1.79
405502--405529	13	2.2	13	100	0	56	42	7	28	21	1.79
406531--406579	25	2.0	25	92	4	82	22	44	16	16	1.86
442435--442489	2	27.5	2	100	0	110	50	0	0	49	1.00
446360--446386	2	13.5	2	100	0	54	48	0	0	51	1.00
449604--449636	3	11.0	3	100	0	66	66	0	0	33	0.92
450261--450296	18	2.1	17	89	5	54	66	2	2	27	1.19
452528--452573	22	2.1	22	100	0	92	56	4	19	19	1.58
455583--455614	3	10.7	3	100	0	64	34	0	0	65	0.93
462658--462704	15	3.1	15	82	14	53	34	0	2	63	1.06
462710--462748	10	3.9	10	79	0	51	51	5	0	43	1.24
474499--474566	19	3.9	19	78	21	85	35	11	14	38	1.83
474501--474563	32	2.0	32	96	0	117	34	12	15	36	1.86
474520--474544	13	1.9	13	100	0	50	36	16	16	32	1.90
474606--474631	13	2.0	13	100	0	52	30	15	15	38	1.88
474586--474652	33	2.0	33	88	0	98	25	14	16	43	1.86
477099--477168	27	2.6	27	86	6	88	24	32	21	21	1.98
477154--477326	52	3.4	51	80	5	204	30	25	12	32	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
476979--477323	51	6.6	52	71	11	202	30	26	11	31	1.92
477306--477387	28	2.9	28	83	7	96	24	32	17	25	1.96
476990--477379	211	1.8	211	88	2	595	29	26	12	30	1.93
478945--479266	165	2.0	165	94	1	565	45	8	13	31	1.73
483906--483959	20	2.6	21	88	2	74	33	16	9	40	1.80
484307--484341	16	2.3	15	90	5	52	45	5	11	37	1.64
484927--484974	16	3.1	16	79	11	55	47	0	0	52	1.00
484925--484963	12	3.4	11	82	10	51	51	0	0	48	1.00
486778--486820	21	2.0	21	86	0	59	25	32	0	41	1.56
486867--486938	28	2.6	27	76	12	74	26	4	6	62	1.39
492482--492674	36	5.2	35	67	13	100	31	7	20	40	1.79
492467--492704	75	3.2	75	89	1	370	31	8	19	40	1.81
495685--495739	21	2.6	21	88	0	83	38	14	0	47	1.45
495709--495880	90	1.9	90	85	4	240	38	13	7	39	1.74
495905--495983	37	2.1	37	100	0	158	46	6	7	39	1.58
497617--497674	22	2.7	21	84	10	64	37	1	1	58	1.18
498178--498213	18	2.1	18	89	5	56	44	0	11	44	1.39
498438--498487	16	3.1	16	83	11	66	30	0	0	70	0.88
498441--498474	4	8.8	4	93	6	61	23	0	0	76	0.79
499211--499270	28	2.1	28	90	0	93	48	0	3	48	1.18
499614--499658	17	2.6	18	86	6	58	48	0	0	51	1.00
503125--503168	13	3.3	13	77	3	52	70	0	0	29	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
503128--503184	18	3.1	18	78	14	62	71	0	0	28	0.86
503174--503281	29	3.7	27	73	19	92	55	1	0	42	1.10
503195--503279	20	4.4	20	71	22	58	55	2	0	42	1.12
503810--503842	7	4.6	7	92	7	57	42	0	57	0	0.98
506126--506176	19	2.7	19	100	0	102	31	11	15	41	1.83
506219--506243	13	1.9	13	100	0	50	40	16	8	36	1.77
506252--506380	52	2.5	52	89	0	204	35	17	16	30	1.92
512263--512376	57	2.0	57	94	0	201	47	16	8	27	1.76
515404--515455	17	2.9	18	78	18	56	48	5	0	46	1.26
515404--515473	37	1.9	36	82	2	86	54	4	0	41	1.20
515932--515970	20	2.1	18	85	9	51	51	0	7	41	1.31
516501--516545	11	4.1	11	88	0	63	33	0	2	64	1.06
516954--517202	132	1.9	133	80	0	293	55	5	8	30	1.51
517219--517374	85	1.8	85	85	0	222	50	5	8	35	1.56
517568--517612	23	1.9	24	86	4	65	4	31	2	62	1.27
518815--518871	26	2.1	27	77	6	62	56	12	10	21	1.65
519153--519212	4	15.0	4	92	0	84	50	6	0	43	1.28
523231--523266	2	18.0	2	91	0	54	50	44	2	2	1.31
525021--525054	4	8.5	4	100	0	68	73	0	0	26	0.83
525639--525681	22	2.0	22	86	9	61	34	11	9	44	1.73
525714--525756	15	2.9	14	80	10	50	39	0	9	51	1.34
530161--530233	20	3.6	20	81	3	101	35	13	19	31	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
530179--530254	21	3.7	21	80	3	100	42	11	17	28	1.84
530161--530254	41	2.3	41	98	0	179	39	12	18	29	1.88
530293--530318	13	2.0	13	100	0	52	38	15	15	30	1.88
534381--534419	15	2.6	15	91	0	60	51	15	20	12	1.76
536423--536501	20	3.7	21	75	15	72	26	13	15	44	1.84
536488--536526	13	3.0	13	96	0	69	30	17	15	35	1.91
538978--539050	20	3.6	20	81	3	101	35	13	19	31	1.91
538996--539071	21	3.7	21	80	3	100	42	11	17	28	1.84
538978--539071	41	2.3	41	98	0	179	39	12	18	29	1.88
539110--539135	13	2.0	13	100	0	52	38	15	15	30	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14