genome.fa.s193.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold193
Parameters: 2 7 7 80 10 50 1000
Length:  3104049

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  10  of  18  ( 2130 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1728864--1728905	22	1.9	22	85	9	59	30	7	2	59	1.37
1728987--1729042	14	3.9	14	76	17	60	41	0	1	57	1.09
1729011--1729055	14	3.0	16	78	15	51	44	2	0	53	1.13
1729170--1729210	16	2.5	16	88	4	55	53	19	4	21	1.63
1730315--1730358	18	2.4	19	85	7	56	61	11	0	27	1.30
1730261--1730356	38	2.6	37	79	15	94	65	9	3	21	1.35
1730404--1730450	24	2.0	24	82	0	58	59	4	0	36	1.17
1730583--1730642	30	2.0	30	100	0	120	20	16	50	13	1.78
1731185--1731234	26	2.0	26	88	4	75	52	0	0	48	1.00
1731912--1731982	23	3.3	23	83	13	89	67	0	0	32	0.91
1731912--1731974	11	5.5	11	74	12	56	68	0	0	31	0.90
1732430--1732474	2	22.5	2	100	0	90	51	0	0	48	1.00
1732282--1732594	169	1.8	171	95	1	567	44	2	5	46	1.42
1732834--1732904	15	4.3	17	83	15	71	59	1	0	39	1.06
1732867--1732904	3	12.7	3	100	0	76	65	0	0	34	0.93
1732834--1732897	18	3.4	18	79	16	58	59	1	0	39	1.07
1733007--1733034	3	9.3	3	100	0	56	67	0	0	32	0.91
1738223--1738251	7	4.1	7	100	0	58	27	44	0	27	1.54
1739793--1739857	16	3.8	16	75	18	51	63	4	0	32	1.15
1740366--1740446	39	2.1	39	88	4	119	18	14	14	51	1.76
1740514--1740550	2	18.5	2	94	0	65	48	0	0	51	1.00
1740862--1740893	13	2.4	14	94	5	57	75	0	3	21	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1741607--1741647	19	2.2	18	86	4	55	14	0	7	78	0.96
1743202--1743235	15	2.1	16	89	10	52	44	0	0	55	0.99
1743232--1743316	25	3.4	23	68	10	62	42	1	2	54	1.21
1743313--1743344	16	1.9	17	93	6	57	53	0	0	46	1.00
1743313--1743346	15	2.1	16	89	10	52	52	0	0	47	1.00
1743415--1743517	45	2.2	47	80	11	115	47	1	2	47	1.28
1744570--1744654	40	2.2	39	93	2	143	29	12	17	40	1.87
1752213--1752238	13	2.0	13	100	0	52	30	15	15	38	1.88
1752193--1752256	33	2.0	32	87	9	94	28	14	17	40	1.88
1752290--1752342	21	2.5	21	100	0	106	30	18	11	39	1.86
1752350--1752374	13	1.9	13	100	0	50	36	16	16	32	1.90
1752332--1752397	33	2.0	33	93	0	114	36	18	16	28	1.93
1752646--1752684	15	2.5	15	95	4	69	25	12	5	56	1.57
1760908--1760946	20	1.9	21	94	5	71	30	10	20	38	1.86
1761008--1761033	13	2.0	13	100	0	52	30	15	15	38	1.88
1760988--1761051	33	2.0	32	87	9	94	28	14	17	40	1.88
1761124--1761148	13	1.9	13	100	0	50	36	16	16	32	1.90
1761106--1761171	33	2.0	33	93	0	114	36	18	16	28	1.93
1761420--1761458	15	2.5	15	95	4	69	25	12	5	56	1.57
1763558--1763622	33	2.0	33	87	6	96	33	20	13	32	1.91
1763652--1763707	19	2.9	19	86	2	76	37	17	14	30	1.90
1763692--1763718	13	2.1	13	100	0	54	40	14	14	29	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1771919--1771974	19	2.9	19	89	2	76	37	17	14	30	1.90
1771959--1771985	13	2.1	13	100	0	54	40	14	14	29	1.86
1783630--1783701	12	5.8	12	80	15	67	84	6	6	1	0.82
1783631--1783717	14	6.3	13	78	15	77	83	4	10	1	0.83
1783631--1783717	16	5.5	15	75	13	59	83	4	10	1	0.83
1783643--1783701	1	59.0	1	79	0	55	88	5	5	1	0.70
1784683--1785288	55	10.9	55	88	4	815	28	29	21	21	1.99
1785176--1785265	26	3.3	26	66	19	67	27	33	18	20	1.96
1785373--1785600	107	2.1	108	96	3	422	18	27	15	38	1.91
1786058--1786154	21	4.7	21	87	5	126	37	14	14	34	1.87
1786056--1786154	41	2.4	42	83	6	130	37	15	14	33	1.87
1786190--1786257	19	3.9	19	78	21	85	35	11	14	38	1.83
1786192--1786254	32	2.0	32	96	0	117	34	12	15	36	1.86
1786211--1786235	13	1.9	13	100	0	50	36	16	16	32	1.90
1786297--1786322	13	2.0	13	100	0	52	30	15	15	38	1.88
1786277--1786343	33	2.0	33	88	0	98	25	14	16	43	1.86
1788790--1788858	27	2.5	27	86	6	86	24	31	21	21	1.98
1788845--1789014	51	3.3	51	79	4	196	29	25	11	33	1.91
1788998--1789079	28	2.9	28	82	7	96	24	31	17	26	1.97
1792004--1792028	13	1.9	13	100	0	50	36	16	16	32	1.90
1791984--1792050	33	2.0	33	88	0	98	34	11	13	40	1.81
1792093--1792117	13	1.9	13	100	0	50	32	16	16	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1792126--1792250	52	2.4	52	95	0	223	36	18	17	28	1.94
1795325--1795374	3	16.7	3	91	8	84	34	32	0	34	1.58
1797994--1798050	30	1.9	30	92	0	96	29	7	21	42	1.79
1799371--1799588	34	6.5	34	85	5	282	40	27	7	24	1.82
1799370--1799588	67	3.3	67	88	1	321	40	26	7	24	1.82
1803654--1803715	19	3.3	19	90	0	88	35	17	17	29	1.93
1804021--1804238	34	6.5	34	85	5	282	40	27	7	24	1.82
1804019--1804238	67	3.3	67	88	1	323	40	27	7	24	1.82
1805991--1806025	16	2.2	16	89	0	52	40	5	2	51	1.40
1807274--1807384	34	3.5	33	68	14	97	46	5	6	41	1.52
1807447--1807533	36	2.4	36	88	1	120	48	10	3	37	1.54
1807506--1807539	18	1.9	17	94	5	59	50	5	0	44	1.26
1811436--1811564	52	2.5	52	93	0	222	27	16	18	37	1.92
1811573--1811597	13	1.9	13	100	0	50	36	16	16	32	1.90
1811650--1811714	19	3.7	19	73	23	70	38	15	12	33	1.85
1811642--1811712	32	2.2	32	94	0	124	36	16	12	33	1.87
1811669--1811693	13	1.9	13	100	0	50	32	16	16	36	1.90
1812461--1813296	92	9.0	92	91	2	1282	30	17	25	25	1.97
1813303--1813490	65	2.9	65	92	1	297	20	19	31	28	1.97
1813303--1813493	33	5.9	32	83	5	240	21	18	30	28	1.97
1813494--1813745	34	8.0	34	78	12	215	30	11	36	21	1.89
1813530--1813793	27	9.0	27	81	11	231	28	12	36	22	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1813495--1813772	61	4.5	61	80	12	327	30	12	35	21	1.90
1813557--1813826	122	2.2	120	90	2	425	28	12	36	22	1.91
1813781--1813855	30	2.5	31	93	2	125	26	16	30	26	1.96
1826030--1826078	21	2.2	23	82	13	59	81	2	10	6	0.94
1826061--1826108	11	4.5	11	84	10	55	75	0	14	10	1.06
1826044--1826108	20	3.2	19	77	14	58	76	0	13	9	1.00
1830344--1830473	51	2.5	50	86	2	179	39	12	16	32	1.85
1831441--1831911	28	16.5	28	83	5	550	21	16	32	29	1.96
1833170--1833246	10	7.4	11	76	12	74	1	2	12	83	0.82
1833170--1833242	21	3.5	20	81	9	83	1	2	12	83	0.82
1833170--1833245	38	2.0	37	82	12	93	1	2	11	84	0.79
1833760--1834506	375	2.0	375	98	0	1431	27	18	19	34	1.95
1838895--1838934	20	2.0	20	100	0	80	5	30	20	45	1.72
1839380--1839427	23	2.1	23	96	0	87	29	8	29	33	1.86
1847598--1847674	20	3.8	20	81	6	93	38	12	14	33	1.84
1847658--1847716	31	1.9	31	96	0	109	45	10	16	27	1.80
1848815--1848866	18	2.9	17	77	22	54	21	3	3	71	1.18
1848824--1848871	24	2.0	25	84	12	64	22	2	4	70	1.15
1851433--1851787	165	2.1	165	85	6	468	29	5	17	47	1.71
1852771--1852936	82	2.0	82	89	1	253	51	4	7	36	1.49
1855219--1855263	21	2.1	21	91	0	72	80	2	17	0	0.82
1855981--1856018	13	3.0	13	85	14	53	84	0	15	0	0.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1855981--1856018	19	2.0	19	90	10	60	84	0	15	0	0.63
1857471--1857722	60	4.2	59	78	4	229	17	15	18	47	1.83
1857471--1857717	119	2.1	119	83	3	309	17	15	18	47	1.82
1858133--1858294	63	2.5	62	75	4	162	17	22	16	43	1.88
1858441--1858580	66	2.1	66	82	2	165	20	17	18	42	1.89
1858486--1858609	66	1.9	66	81	3	151	20	18	20	41	1.91
1859145--1859398	66	3.9	64	77	9	214	16	21	17	45	1.86
1864689--1864786	19	5.9	17	72	27	86	34	12	17	35	1.87
1864691--1864793	32	3.2	32	97	0	188	33	12	18	34	1.89
1864710--1864766	13	3.9	13	76	24	60	35	14	17	33	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18