genome.fa.s193.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold193
Parameters: 2 7 7 80 10 50 1000
Length:  3104049

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  3  of  18  ( 2130 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
356288--356360	29	2.5	30	90	2	121	26	19	16	38	1.92
358785--358904	51	2.4	51	89	0	186	29	29	11	30	1.92
358722--359246	130	4.0	129	82	5	556	29	26	11	32	1.91
358915--359034	51	2.4	51	88	0	186	30	25	11	31	1.91
359045--359163	51	2.3	51	86	0	157	29	29	12	28	1.93
359149--359396	79	3.1	79	91	1	372	28	23	13	34	1.93
370942--371070	52	2.5	52	89	0	213	28	18	18	34	1.95
370942--371090	52	2.9	52	86	2	210	30	18	18	32	1.95
371079--371103	13	1.9	13	100	0	50	36	16	16	32	1.90
371156--371218	19	3.7	18	72	24	64	38	17	9	34	1.82
371150--371233	32	2.6	32	90	0	141	39	16	9	34	1.81
374584--374615	13	2.5	13	95	5	57	34	6	15	43	1.72
374584--374662	33	2.4	33	86	0	104	36	12	12	37	1.82
375731--375881	79	1.9	79	90	5	243	33	12	27	27	1.93
375840--375966	28	4.6	27	72	12	96	32	17	25	24	1.97
375847--375967	56	2.2	56	84	3	154	33	19	23	23	1.97
375954--376067	51	2.2	51	89	3	167	32	11	25	30	1.91
376009--376154	79	1.9	78	88	1	220	32	15	24	28	1.95
376104--376198	47	2.0	47	87	0	136	32	13	25	28	1.94
375925--376274	126	2.7	128	86	2	454	32	14	24	28	1.94
379650--379675	13	2.0	13	100	0	52	38	15	15	30	1.88
379629--379695	33	2.0	33	88	0	98	43	16	14	25	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
379737--379761	13	1.9	13	100	0	50	32	16	16	36	1.90
379713--379784	19	4.2	17	71	25	62	36	12	13	37	1.83
380597--381371	290	2.7	289	86	6	1086	23	20	29	26	1.99
380597--381366	55	13.3	59	82	10	789	23	20	29	26	1.99
387933--387958	13	2.0	13	100	0	52	38	15	15	30	1.88
387912--387978	33	2.0	33	88	0	98	43	16	14	25	1.86
387996--388067	19	4.2	17	73	25	71	37	12	12	37	1.81
388020--388044	13	1.9	13	100	0	50	32	16	16	36	1.90
388001--388062	32	1.9	32	93	0	106	35	14	12	37	1.85
388101--388177	21	3.7	21	89	3	111	35	16	12	35	1.88
388709--388812	20	4.8	20	75	19	82	43	14	14	27	1.84
388709--388860	69	2.2	70	89	1	225	42	14	15	27	1.85
389216--389247	5	6.8	5	86	13	50	15	0	0	84	0.63
389408--389825	43	9.7	42	72	9	245	43	12	24	19	1.86
389431--389825	85	4.6	87	79	5	374	44	12	23	18	1.85
389408--389823	41	9.7	44	74	8	252	43	12	24	19	1.86
389819--390328	61	8.6	60	83	8	582	28	20	27	24	1.99
389819--390327	115	4.3	115	86	4	574	27	20	27	24	1.99
389819--390330	176	2.9	177	83	9	598	28	20	27	24	1.99
391295--391400	1	106.0	1	72	0	77	2	4	6	85	0.80
391295--391400	17	6.2	17	76	5	88	2	4	6	85	0.80
391295--391400	25	4.3	25	75	2	97	2	4	6	85	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
401896--401929	2	17.0	2	100	0	68	50	0	0	50	1.00
403154--403187	5	6.8	5	100	0	68	41	0	0	58	0.98
403551--403634	17	5.1	17	81	8	93	61	8	1	28	1.32
403558--403617	15	3.8	15	82	10	75	63	6	0	30	1.20
403557--403634	33	2.4	32	89	2	111	64	8	0	26	1.23
404236--404284	23	2.1	24	81	11	57	67	4	0	28	1.09
404939--404972	18	2.0	18	88	11	54	35	0	0	64	0.94
404948--404989	22	2.0	22	86	9	61	35	0	0	64	0.94
405573--405615	3	14.3	3	100	0	86	32	0	0	67	0.91
414365--414422	22	2.6	23	83	2	73	60	0	0	39	0.97
416650--416695	15	2.9	16	78	12	51	47	0	2	50	1.13
421330--421497	51	3.3	51	81	3	205	32	9	25	32	1.88
421480--421553	28	2.7	28	83	6	98	24	24	31	20	1.98
421433--421872	108	4.1	108	74	8	350	32	15	25	26	1.95
421591--421661	28	2.5	28	86	11	101	26	19	29	23	1.98
421648--421812	51	3.2	51	84	0	177	33	11	24	30	1.91
421841--421961	41	3.0	41	98	0	233	29	20	29	19	1.97
424239--424354	20	5.8	19	87	6	151	44	12	14	27	1.82
424239--424354	60	1.9	60	91	0	187	44	12	14	27	1.82
424943--425057	41	2.8	41	73	15	112	40	12	25	21	1.88
425060--425175	42	2.7	41	83	10	135	39	12	25	21	1.89
425242--425542	61	5.1	60	78	11	275	29	20	24	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
425352--425541	55	3.3	55	82	9	254	24	21	26	27	1.99
425283--425542	116	2.2	116	83	3	344	27	20	26	25	1.99
425338--425968	217	3.0	210	84	5	826	27	19	26	25	1.99
425549--425738	61	3.1	61	85	2	247	31	18	25	24	1.97
425671--425855	94	2.0	95	90	1	291	29	18	26	24	1.98
425777--426017	55	4.4	55	90	0	374	21	21	28	28	1.99
425833--426227	204	1.9	205	91	1	650	24	20	28	26	1.99
426036--426271	55	4.3	55	88	5	334	23	22	26	27	1.99
425887--426279	149	2.5	150	83	8	450	23	21	28	26	1.99
426037--426281	110	2.2	110	89	2	368	24	22	26	26	2.00
425682--426350	259	2.6	258	92	1	1122	24	20	28	26	1.99
427367--427417	1	51.0	1	80	0	57	0	1	7	90	0.53
427353--427404	22	2.4	22	83	0	59	0	9	3	86	0.69
427374--427416	11	3.9	11	90	9	70	0	0	9	90	0.45
427374--427415	21	2.0	22	95	4	77	0	0	9	90	0.45
439859--440026	51	3.3	49	84	8	203	31	10	26	32	1.89
439992--440202	108	2.0	108	83	3	273	33	15	24	27	1.95
440117--440187	28	2.5	28	95	0	124	28	16	29	25	1.97
440177--440343	51	3.3	50	80	1	172	35	12	20	30	1.90
442700--442754	20	2.8	20	88	0	83	41	14	14	29	1.85
449892--449944	25	2.1	25	82	0	61	33	24	15	26	1.95
451172--451253	20	4.1	20	76	19	82	37	15	14	31	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
451195--451253	21	2.9	21	85	12	86	37	15	15	32	1.88
451176--451253	41	1.9	41	84	10	106	38	15	15	30	1.88
454728--455627	79	11.4	79	89	2	1310	34	14	24	26	1.94
454728--455625	392	2.3	393	89	3	1349	34	14	24	26	1.94
456999--457120	35	3.5	35	94	2	212	19	30	4	45	1.72
457133--457160	6	4.7	6	100	0	56	28	0	0	71	0.86
457591--457690	42	2.4	40	80	11	105	46	9	26	19	1.79
457742--457843	42	2.4	41	84	11	118	39	16	24	19	1.92
457819--458030	61	3.5	60	81	7	241	31	18	24	25	1.98
458045--458468	55	7.5	55	81	10	498	24	20	28	27	1.99
458045--458711	171	4.0	172	80	15	770	24	19	28	26	1.99
458033--458468	116	3.8	113	80	12	480	24	19	28	27	1.99
458216--458864	266	2.4	266	93	2	1075	24	19	29	26	1.99
458375--458563	94	2.0	96	91	4	312	27	17	29	24	1.98
458484--458725	55	4.3	57	86	9	318	22	21	28	27	1.99
458476--458724	117	2.2	110	88	7	356	23	20	28	26	1.99
458756--458896	61	2.3	62	88	3	214	28	19	28	24	1.98
472293--472364	28	2.6	29	91	6	121	23	20	33	22	1.97
472318--473088	79	9.8	79	90	1	1190	33	14	24	27	1.94
472236--472440	107	1.9	109	87	5	308	31	16	27	24	1.96
474469--474556	35	2.6	34	94	3	151	18	29	5	46	1.72
474568--474595	6	4.7	6	100	0	56	28	0	0	71	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
478170--478263	48	1.9	50	84	4	120	31	19	15	32	1.93
480162--480202	21	1.9	22	85	5	57	19	4	14	60	1.51
483277--483316	2	20.0	2	100	0	80	50	0	0	50	1.00
483766--483839	19	3.7	19	70	22	53	56	0	4	39	1.18
485690--485731	22	1.9	22	90	0	66	30	14	16	38	1.89
487009--487053	21	2.2	20	88	4	63	73	0	0	26	0.84
487031--487064	13	2.6	13	85	0	50	67	0	0	32	0.91
487017--487064	24	1.9	26	87	8	73	70	0	0	29	0.87
498553--498620	35	1.9	35	85	8	93	42	0	2	54	1.15
498629--498675	23	2.0	25	87	8	71	44	0	2	53	1.12

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18