genome.fa.s193.2.7.7.80.10.50.1000.18.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold193
Parameters: 2 7 7 80 10 50 1000
Length:  3104049

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  18  of  18  ( 2130 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2993187--2993449	49	5.4	49	68	15	195	32	1	10	55	1.44
2993183--2993487	97	3.2	97	91	0	504	31	1	11	55	1.45
2993236--2993490	48	5.3	47	67	13	153	31	1	10	56	1.42
2993332--2993404	25	3.0	26	78	13	82	34	0	8	57	1.28
2993509--2993842	73	4.6	72	83	3	368	32	1	13	52	1.50
2993506--2993833	144	2.3	143	84	5	410	32	1	13	52	1.51
2994809--2995013	104	2.0	104	96	0	374	37	17	11	33	1.85
2997225--2997281	20	2.8	20	91	0	78	31	15	8	43	1.78
3011753--3011852	52	1.9	52	91	0	164	27	16	18	39	1.91
3011821--3011870	20	2.5	20	96	0	91	28	18	18	36	1.94
3011766--3011921	72	2.2	71	87	4	224	28	17	19	34	1.95
3011910--3011934	13	1.9	13	100	0	50	36	16	16	32	1.90
3011979--3012049	32	2.2	32	87	0	106	35	16	11	36	1.85
3014220--3014273	20	2.7	20	88	5	74	31	11	18	38	1.86
3020554--3020594	22	1.9	21	85	14	57	34	14	0	51	1.43
3023011--3023064	20	2.7	19	88	11	74	31	14	18	35	1.91
3025962--3026375	28	14.8	28	81	6	435	28	28	18	24	1.98
3025962--3026415	56	8.0	56	84	3	482	28	28	17	24	1.98
3027304--3027378	20	3.8	20	87	0	105	33	12	13	41	1.81
3032791--3032888	31	3.2	30	81	8	99	19	15	42	22	1.88
3032936--3032992	22	2.6	22	88	0	78	15	21	43	19	1.87
3032692--3033004	133	2.3	132	76	5	324	17	17	40	24	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3032985--3033056	10	7.3	10	73	13	51	12	13	44	29	1.81
3033957--3033996	11	3.6	11	96	0	71	25	5	0	70	1.08
3033956--3034010	11	4.7	12	84	10	53	25	3	0	70	1.03
3035602--3035779	91	1.9	92	84	5	236	35	15	6	42	1.73
3036118--3036208	39	2.3	39	82	0	110	39	13	4	42	1.64
3038712--3038939	97	2.3	98	83	4	275	35	11	23	29	1.90
3041415--3041462	20	2.3	21	82	13	64	27	16	10	45	1.80
3043980--3044049	32	2.2	32	87	2	97	37	20	5	37	1.76
3044244--3044301	29	2.0	29	93	0	98	48	0	1	50	1.11
3048757--3048808	2	26.0	2	92	0	86	46	0	3	50	1.20
3049423--3049495	26	2.9	25	77	6	76	58	1	0	39	1.06
3049457--3049487	16	1.9	16	93	0	53	54	0	0	45	0.99
3050141--3050203	30	2.2	29	82	5	74	55	1	3	39	1.25
3050102--3050303	95	2.1	97	77	6	205	58	2	4	34	1.31
3050392--3050448	29	2.0	29	92	0	96	35	8	10	45	1.70
3050647--3050693	21	2.2	22	81	11	62	51	0	2	46	1.13
3051623--3051701	18	4.3	19	66	23	53	39	3	6	50	1.46
3051803--3051833	15	2.0	16	93	6	55	67	0	0	32	0.91
3051975--3052053	18	4.2	19	73	23	53	45	2	2	49	1.29
3052025--3052077	18	2.9	18	84	13	65	41	0	0	58	0.98
3052026--3052087	18	3.8	17	76	17	60	43	0	0	56	0.99
3052064--3052108	22	2.0	22	86	4	63	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3052240--3052271	9	3.6	9	91	0	55	81	0	0	18	0.70
3055355--3055384	2	15.0	2	100	0	60	50	0	0	50	1.00
3059062--3059096	2	18.0	2	88	5	54	51	0	2	45	1.16
3059542--3059567	2	13.0	2	100	0	52	50	0	0	50	1.00
3061045--3061100	25	2.2	26	78	12	62	51	0	1	46	1.11
3061344--3061369	2	13.0	2	100	0	52	50	0	0	50	1.00
3061454--3061519	16	4.2	17	70	20	54	63	0	0	36	0.95
3062035--3062321	137	2.1	136	82	11	336	53	4	6	34	1.49
3062745--3062808	20	3.2	20	77	0	74	34	14	9	42	1.77
3066548--3066612	16	3.7	19	68	31	56	58	0	1	40	1.07
3067371--3067430	19	3.0	20	76	18	61	35	8	1	55	1.40
3068352--3068386	2	17.5	2	100	0	70	51	0	48	0	1.00
3070241--3070290	21	2.3	22	86	6	66	28	6	6	60	1.44
3071354--3071386	16	2.1	16	94	0	57	42	0	6	51	1.26
3071378--3071445	30	2.3	30	84	5	84	33	2	5	57	1.38
3071401--3071464	30	2.1	30	85	0	83	37	3	7	51	1.47
3071574--3071613	15	2.6	15	88	4	53	7	10	0	82	0.84
3073569--3073645	21	3.7	21	86	10	104	36	12	15	35	1.86
3073681--3073748	19	3.9	19	78	21	85	35	11	14	38	1.83
3073683--3073745	32	2.0	32	96	0	117	34	12	15	36	1.86
3073702--3073726	13	1.9	13	100	0	50	36	16	16	32	1.90
3073788--3073813	13	2.0	13	100	0	52	30	15	15	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3073768--3073834	33	2.0	33	88	0	98	25	14	16	43	1.86
3076339--3076508	52	3.3	51	78	5	189	31	24	11	32	1.90
3076174--3076582	211	1.9	211	85	3	554	30	26	12	30	1.92
3080205--3080286	25	3.2	25	75	16	62	8	20	4	65	1.38
3083250--3083371	63	1.9	63	80	6	140	31	13	13	40	1.85
3093667--3093714	14	3.2	15	76	8	53	70	10	0	18	1.15
3093671--3093706	18	2.1	17	89	5	54	69	11	0	19	1.18
3093759--3093852	41	2.3	40	77	10	102	62	2	0	35	1.07
3093799--3093855	20	2.8	21	82	15	66	63	5	0	31	1.17
3095401--3095443	18	2.4	17	85	11	59	51	2	0	46	1.13
3095401--3095448	19	2.6	18	87	9	62	52	2	0	45	1.12
3095413--3095468	18	3.1	18	82	10	53	44	1	0	53	1.11
3095678--3095729	19	2.8	19	79	2	61	61	0	0	38	0.96
3095716--3095752	19	1.9	19	88	0	56	54	0	0	45	1.00
3095718--3095762	15	2.8	16	80	10	56	48	0	2	48	1.13
3097352--3097393	18	2.4	18	81	14	52	66	7	0	26	1.17
3098748--3098835	29	3.1	29	76	3	106	47	3	2	46	1.31
3098941--3099005	11	6.0	11	74	3	60	33	1	0	64	1.03
3099316--3099432	22	5.2	23	69	20	70	42	0	0	57	0.98
3100309--3100375	22	3.0	22	74	18	66	47	1	4	46	1.31
3100389--3100486	16	6.0	15	69	24	56	44	0	2	53	1.12
3100853--3100882	15	1.9	15	93	6	51	66	0	3	30	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3100962--3101025	32	2.0	33	84	9	87	50	4	1	43	1.32
3101166--3101208	17	2.5	16	82	14	50	65	0	0	34	0.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18

The End!