genome.fa.s193.2.7.7.80.10.50.1000.15.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold193
Parameters: 2 7 7 80 10 50 1000
Length:  3104049

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  15  of  18  ( 2130 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2504593--2504645	2	26.5	2	100	0	106	49	0	0	50	1.00
2506763--2506822	12	5.0	12	78	15	54	61	0	1	36	1.06
2506762--2506835	23	3.0	25	82	5	71	60	0	1	37	1.05
2507514--2507550	2	19.0	2	94	5	67	48	0	51	0	1.00
2508541--2508573	16	2.0	17	88	5	50	9	33	0	57	1.30
2510362--2510391	15	2.1	14	93	6	51	83	0	10	6	0.81
2510563--2510922	195	1.8	196	87	2	544	32	7	9	50	1.64
2516663--2516748	24	3.8	24	72	17	76	43	2	44	10	1.51
2516654--2516772	42	2.8	42	89	0	184	43	2	45	8	1.47
2516687--2516757	18	3.6	18	71	20	52	45	2	42	9	1.52
2517090--2517120	12	2.6	12	100	0	62	38	25	9	25	1.86
2528082--2528209	52	2.5	52	93	3	215	31	17	17	33	1.93
2528082--2528229	52	2.9	50	85	12	185	32	17	17	32	1.94
2528218--2528242	13	1.9	13	100	0	50	36	16	16	32	1.90
2528283--2528349	33	2.0	33	88	0	98	40	13	11	34	1.81
2528305--2528329	13	1.9	13	100	0	50	32	16	16	36	1.90
2528805--2529432	83	7.5	82	78	8	344	24	17	28	29	1.97
2528823--2529479	28	23.5	29	77	7	553	24	17	29	29	1.97
2534958--2535002	15	3.0	15	76	0	54	13	0	42	44	1.43
2546010--2546639	28	22.9	27	83	6	466	26	32	15	26	1.96
2546365--2547144	32	25.8	31	83	7	584	30	30	17	20	1.96
2546365--2547144	96	8.6	96	82	8	644	30	30	17	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2552370--2552907	280	1.9	278	83	4	699	27	20	25	26	1.99
2555880--2555917	20	1.9	20	100	0	76	39	10	18	31	1.85
2562266--2562376	38	2.9	38	80	7	109	28	14	16	40	1.87
2563697--2563745	21	2.3	22	82	3	64	48	0	0	51	1.00
2563697--2563762	20	3.3	19	74	14	51	50	3	0	46	1.16
2564575--2564651	39	2.0	39	89	0	118	37	14	9	38	1.78
2565668--2565737	10	6.6	11	75	9	58	70	4	0	25	1.06
2565655--2565737	21	3.9	19	76	16	67	68	6	0	25	1.12
2567950--2568032	18	4.7	17	73	15	62	15	8	0	75	1.02
2567981--2568034	10	5.7	10	71	20	53	20	3	0	75	0.95
2579320--2579645	92	3.5	91	71	9	243	50	12	1	34	1.49
2579258--2579670	185	2.2	183	82	6	505	49	11	1	37	1.47
2580820--2580867	3	16.0	3	84	0	51	35	4	2	58	1.29
2582399--2582425	3	9.0	3	100	0	54	0	33	33	33	1.58
2583988--2584028	20	2.0	20	86	9	57	56	7	4	31	1.48
2584903--2584967	17	3.7	18	75	17	64	49	0	0	50	1.00
2584916--2584958	21	2.1	20	82	4	50	53	0	0	46	1.00
2584962--2585021	20	3.2	20	73	17	56	48	1	0	50	1.11
2585023--2585062	21	2.0	20	90	5	62	52	0	5	42	1.23
2585051--2585076	7	3.7	7	100	0	52	69	0	0	30	0.89
2587630--2587765	69	2.0	69	89	0	209	53	13	13	19	1.72
2588465--2588500	2	18.0	2	94	0	63	50	0	2	47	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2589744--2589787	16	2.7	16	85	3	52	56	2	0	40	1.11
2589727--2589783	28	2.0	28	86	6	80	56	1	0	42	1.10
2592164--2592192	14	2.1	14	100	0	58	41	0	6	51	1.28
2593187--2593219	12	2.8	12	100	0	66	18	6	6	69	1.30
2593548--2593595	22	2.1	24	81	14	57	41	0	0	58	0.98
2594679--2594708	9	3.3	9	95	0	51	60	0	6	33	1.23
2595293--2595330	20	1.9	20	88	0	58	15	0	5	78	0.91
2595294--2595338	20	2.2	20	84	0	54	20	0	2	77	0.87
2595383--2595468	42	2.0	42	84	4	111	30	0	5	63	1.17
2595444--2595488	19	2.3	19	92	3	72	35	0	2	62	1.08
2595664--2595726	33	1.9	32	93	3	108	41	0	6	52	1.27
2600381--2600437	3	19.0	3	92	0	87	64	3	1	29	1.20
2601137--2601175	20	2.0	20	84	0	51	33	0	0	66	0.92
2602552--2602584	16	2.0	17	88	5	50	48	0	3	48	1.17
2602988--2603033	24	1.9	24	81	0	56	47	4	2	45	1.34
2604106--2604152	21	2.2	21	81	11	51	46	2	0	51	1.13
2604446--2604480	18	1.9	18	88	0	52	22	0	0	77	0.78
2605296--2605343	9	5.2	9	78	14	53	50	0	2	47	1.12
2606241--2606293	24	2.3	23	81	12	63	43	0	0	56	0.99
2606252--2606332	28	2.9	29	76	12	80	40	0	0	59	0.98
2606270--2606353	30	2.9	29	75	8	82	42	0	0	57	0.99
2606252--2606349	30	3.4	27	67	16	63	42	0	0	57	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2606334--2606396	18	3.6	17	73	23	60	57	1	0	41	1.08
2606348--2606390	21	2.0	23	86	9	63	55	2	0	41	1.12
2606570--2606630	30	2.0	30	84	6	79	65	0	0	34	0.93
2606583--2606627	19	2.4	19	84	0	63	66	0	0	33	0.92
2606584--2606630	6	7.7	6	80	20	53	68	0	0	31	0.90
2607489--2607536	17	2.7	18	78	12	55	60	0	2	37	1.09
2607739--2607764	13	2.0	13	100	0	52	53	0	0	46	1.00
2610861--2610931	35	2.0	35	100	0	142	29	8	16	45	1.77
2617219--2617301	40	2.1	40	88	0	121	27	20	8	43	1.81
2618206--2618252	14	3.5	13	83	13	60	38	2	10	48	1.50
2620178--2620238	30	2.0	30	96	0	113	36	19	21	22	1.95
2624598--2624723	51	2.5	51	96	2	227	38	13	17	30	1.88
2629284--2629322	16	2.4	16	86	4	51	30	7	15	46	1.74
2630013--2630086	14	5.7	14	78	13	79	37	0	2	59	1.12
2630006--2630091	25	3.4	25	85	7	113	39	0	2	58	1.11
2630009--2630086	39	2.0	39	100	0	156	38	0	2	58	1.12
2630967--2630995	2	14.5	2	100	0	58	48	0	0	51	1.00
2634940--2634977	20	1.9	20	84	10	51	34	34	2	28	1.71
2637982--2638026	20	2.2	20	100	0	90	33	0	17	48	1.48
2638577--2638615	20	2.0	20	90	10	62	48	2	0	48	1.15
2640385--2640617	50	4.6	50	90	1	358	29	19	20	30	1.97
2646616--2646684	32	2.2	31	84	7	86	44	1	1	52	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2646672--2646713	22	1.9	22	90	0	66	52	0	0	47	1.00
2646682--2646713	15	2.1	15	94	0	55	50	0	0	50	1.00
2646682--2646713	7	4.2	8	84	15	50	50	0	0	50	1.00
2647703--2647854	49	3.0	50	87	2	216	39	21	28	11	1.87
2648689--2648744	16	3.4	16	78	9	58	33	0	0	66	0.92
2648668--2648744	18	4.3	18	77	11	70	37	1	0	61	1.05
2649809--2649846	2	19.0	2	100	0	76	50	0	0	50	1.00
2650151--2650180	10	3.1	10	90	9	53	70	0	0	30	0.88
2650846--2650889	21	2.0	21	86	4	61	29	4	20	45	1.71
2652003--2652046	18	2.6	17	85	7	54	38	2	0	59	1.10
2652205--2652237	15	2.1	16	88	11	50	33	6	0	60	1.21
2652567--2652604	16	2.4	16	90	0	58	52	2	0	44	1.14
2652558--2652615	26	2.1	28	84	12	77	51	1	1	44	1.21
2653017--2653145	69	1.9	69	82	7	167	54	1	0	43	1.15
2653072--2653456	113	3.4	111	83	7	467	53	2	1	41	1.25
2653162--2653482	110	2.9	111	78	7	255	53	2	2	41	1.27
2653791--2653820	15	2.0	15	93	0	51	36	0	0	63	0.95
2653791--2654131	123	2.8	123	86	9	475	41	2	1	54	1.21
2653791--2654134	122	2.8	125	88	6	483	41	2	1	54	1.21
2653829--2654198	122	3.0	118	78	14	292	44	1	1	52	1.21
2654607--2655732	91	12.6	89	83	8	1216	41	8	15	34	1.77
2654607--2655719	179	6.3	176	81	9	1239	41	8	15	35	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2655017--2655728	90	8.1	84	83	8	401	42	8	15	34	1.76
2662358--2662472	34	3.4	33	68	17	92	44	17	18	20	1.87
2662661--2662755	36	2.6	36	81	0	109	38	28	6	26	1.80
2662872--2662942	37	1.9	37	97	0	133	28	11	15	45	1.80
2662945--2662974	15	2.0	15	93	0	51	33	30	13	23	1.93
2662962--2663081	36	3.3	35	74	17	109	34	25	10	30	1.90
2663043--2663109	27	2.7	24	79	6	71	34	31	11	22	1.90
2662597--2663166	306	1.9	306	92	0	969	32	23	12	32	1.91
2664996--2665021	11	2.4	11	100	0	52	57	0	0	42	0.98
2665579--2665663	33	2.4	36	82	11	104	48	0	0	51	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18