genome.fa.s193.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold193
Parameters: 2 7 7 80 10 50 1000
Length:  3104049

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  7  of  18  ( 2130 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1262219--1262285	20	3.7	20	74	25	85	23	20	17	37	1.94
1262217--1262319	33	3.1	33	97	0	188	25	20	16	37	1.93
1262283--1262320	20	1.9	19	94	5	67	26	21	13	39	1.89
1262239--1262300	13	5.2	13	72	21	64	25	17	17	38	1.92
1264617--1264781	51	3.2	50	85	5	206	30	25	11	32	1.91
1264796--1264915	51	2.4	51	79	0	132	30	27	12	30	1.93
1264663--1264943	130	2.2	130	84	3	386	28	27	13	31	1.94
1264900--1264967	28	2.4	27	85	9	93	23	29	19	27	1.98
1264847--1265045	107	1.9	106	84	6	267	26	26	16	30	1.96
1264923--1265074	79	1.9	79	85	5	209	25	28	17	29	1.97
1269161--1269206	22	2.1	22	100	0	92	63	4	17	15	1.47
1270481--1270509	10	2.7	11	89	10	51	68	0	0	31	0.89
1273097--1273155	31	1.9	31	82	6	75	52	1	3	42	1.28
1274816--1274849	2	17.5	2	93	6	61	50	0	0	50	1.00
1277472--1277530	8	7.2	8	78	12	50	27	1	1	69	1.07
1279570--1279617	14	3.1	16	82	11	64	41	14	0	43	1.45
1279688--1279734	18	2.7	18	84	12	62	65	0	0	34	0.93
1279744--1279786	17	2.6	16	79	17	52	53	0	0	46	1.00
1280643--1280699	29	2.0	29	82	6	71	52	0	3	43	1.18
1284828--1284882	22	2.5	22	100	0	110	61	9	10	18	1.54
1285791--1285865	20	3.8	20	80	3	80	40	12	13	34	1.81
1285788--1285865	40	2.0	39	87	2	111	39	12	12	34	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1286473--1288403	28	67.5	28	84	7	1390	23	17	32	26	1.96
1286428--1287801	58	23.6	56	83	9	1439	22	18	31	27	1.97
1286427--1287758	28	45.8	29	85	7	1524	21	18	31	28	1.97
1295871--1295926	22	2.5	23	97	2	105	62	8	10	17	1.52
1296838--1296912	20	3.8	20	82	3	89	41	12	12	34	1.79
1296835--1296912	40	2.0	39	85	7	104	41	12	11	34	1.80
1297473--1297509	13	2.8	14	84	12	51	32	0	0	67	0.91
1297471--1297509	19	2.1	19	85	9	53	30	0	0	69	0.89
1298136--1298187	3	17.7	3	88	4	79	63	1	1	32	1.16
1298295--1298364	32	2.2	32	82	5	79	45	5	8	40	1.58
1298339--1298669	169	2.0	169	92	1	547	44	9	9	36	1.69
1298781--1298809	14	2.0	15	93	6	51	48	6	0	44	1.29
1299391--1299497	20	5.7	20	73	18	88	28	14	14	42	1.85
1299408--1299477	33	2.1	33	94	0	122	27	15	14	42	1.86
1299391--1299497	53	2.0	53	87	7	155	28	14	14	42	1.85
1299428--1299458	13	2.4	13	100	0	62	29	16	16	38	1.90
1301800--1301949	51	2.9	51	79	2	158	30	25	10	34	1.89
1302095--1302364	79	3.4	78	78	7	267	26	27	14	31	1.95
1302056--1302364	158	1.9	159	83	4	392	27	26	14	31	1.95
1311486--1311557	28	2.6	28	84	4	92	23	30	19	26	1.98
1311589--1311667	28	2.8	28	76	0	77	25	26	17	30	1.97
1311433--1311691	110	2.4	110	76	5	278	28	23	13	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1311701--1311922	79	2.8	78	82	3	264	30	25	13	31	1.93
1316040--1316098	30	2.0	29	83	6	75	66	5	10	18	1.40
1318611--1318652	22	1.9	22	85	9	59	50	0	0	50	1.00
1318844--1319186	114	3.0	113	90	1	533	20	21	19	38	1.94
1320197--1320250	16	3.4	15	75	12	54	44	22	12	20	1.85
1322440--1322465	13	2.0	13	100	0	52	30	15	15	38	1.88
1322420--1322483	32	2.0	33	87	3	94	28	14	17	40	1.88
1330395--1330420	13	2.0	13	100	0	52	30	15	15	38	1.88
1330375--1330436	32	1.9	33	86	3	90	27	12	17	41	1.86
1331801--1332521	166	4.4	165	80	8	677	30	9	8	51	1.64
1331916--1332529	325	1.9	329	82	8	775	28	9	9	52	1.65
1333969--1334211	128	1.9	128	86	1	344	32	9	13	44	1.76
1334601--1334649	25	2.0	25	91	0	80	22	20	28	28	1.98
1346255--1347090	166	5.0	164	82	4	831	29	11	9	50	1.69
1346255--1347089	331	2.5	333	82	4	963	28	11	9	50	1.69
1346263--1347089	165	5.0	164	82	5	824	28	11	9	50	1.69
1347480--1347519	11	3.6	11	86	0	53	72	0	25	2	0.97
1348437--1348676	128	1.9	128	86	1	347	34	10	12	42	1.77
1352737--1352798	15	3.8	15	74	17	61	53	0	0	46	1.00
1356074--1356112	3	13.0	3	100	0	78	66	0	0	33	0.92
1356785--1356813	2	14.5	2	100	0	58	51	0	0	48	1.00
1362260--1362344	7	10.6	8	70	21	54	48	1	1	49	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1362240--1362334	24	4.0	23	75	14	77	53	2	1	43	1.19
1362245--1362343	33	3.0	33	75	11	87	50	2	1	46	1.19
1362297--1362345	18	2.9	18	82	14	68	44	0	0	55	0.99
1362262--1362363	24	4.3	24	73	10	77	46	0	0	51	1.14
1363881--1363916	16	2.1	18	90	10	58	25	5	5	63	1.38
1364662--1364729	16	4.3	15	74	14	57	70	1	1	26	1.04
1364673--1364728	21	2.6	21	80	11	60	69	1	1	26	1.08
1364708--1364800	29	3.1	28	76	19	89	54	5	2	37	1.35
1367030--1367074	21	2.2	21	80	15	58	55	0	0	44	0.99
1367036--1367076	21	2.0	21	90	4	66	53	0	0	46	1.00
1367037--1367097	28	2.2	28	82	8	79	52	1	0	45	1.10
1367498--1367537	14	3.1	14	75	17	50	75	0	0	25	0.81
1369335--1369386	16	3.1	16	78	10	52	48	0	0	51	1.00
1369368--1369405	16	2.4	16	86	8	51	50	0	0	50	1.00
1369376--1369411	16	2.2	17	90	5	56	50	0	0	50	1.00
1369595--1369661	28	2.4	28	82	5	73	47	4	1	46	1.31
1369595--1369646	26	1.9	28	81	14	65	44	3	1	50	1.31
1369753--1369786	7	4.9	7	92	0	59	41	0	2	55	1.15
1370455--1370491	18	2.1	18	95	5	67	51	0	0	48	1.00
1371738--1371807	13	5.4	12	71	17	52	68	2	1	27	1.12
1379266--1379308	2	21.5	2	100	0	86	48	0	0	51	1.00
1379501--1379543	2	21.5	2	86	9	61	48	2	2	46	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1382770--1382901	34	3.9	34	89	3	185	33	20	9	37	1.84
1388391--1388420	2	15.0	2	100	0	60	50	0	0	50	1.00
1389307--1389349	22	2.1	22	87	12	65	69	2	0	27	1.00
1389321--1389372	25	2.1	24	86	10	70	73	1	0	25	0.94
1393665--1393717	20	2.6	20	88	8	72	32	18	11	37	1.87
1394596--1394761	62	2.7	63	82	6	178	30	15	21	33	1.94
1394738--1394957	32	6.9	32	77	7	189	22	15	29	33	1.94
1394738--1394957	95	2.3	96	80	11	254	22	15	29	33	1.94
1394748--1394957	63	3.3	64	78	7	212	22	14	30	33	1.93
1394954--1395228	34	8.5	33	71	16	139	40	10	25	23	1.87
1395098--1395151	27	2.0	28	82	10	67	33	11	27	27	1.91
1395155--1395245	32	2.8	33	85	5	123	38	10	26	24	1.88
1395034--1395271	121	2.0	123	81	8	290	39	11	24	23	1.89
1395208--1395355	61	2.4	61	82	3	174	38	10	26	24	1.88
1395214--1395322	27	3.8	27	73	16	76	35	11	28	24	1.90
1395398--1395670	30	9.2	30	79	7	263	31	13	30	23	1.94
1395403--1395671	60	4.5	58	80	6	299	31	14	30	24	1.94
1395408--1395671	119	2.2	118	84	6	327	31	14	30	24	1.94
1397073--1397144	33	2.1	34	82	7	85	5	9	9	75	1.20
1397996--1398049	20	2.8	20	91	2	83	38	20	11	29	1.87
1405413--1405463	20	2.6	19	81	9	59	43	13	13	29	1.83
1405543--1405593	20	2.5	21	87	3	68	37	21	5	35	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1406348--1406406	23	2.5	23	76	13	57	32	1	5	61	1.28
1406414--1406457	23	1.9	23	85	0	61	52	6	0	40	1.28
1406429--1406468	18	2.2	19	90	4	64	57	7	0	35	1.27
1406629--1406699	34	2.1	34	84	10	92	45	1	7	46	1.39
1407900--1407941	16	2.7	16	92	3	68	28	2	2	66	1.16
1408212--1408248	19	1.9	20	88	5	58	35	0	2	62	1.10
1408242--1408322	18	4.3	18	74	9	63	43	0	0	56	0.99
1408205--1408326	47	2.7	47	78	8	110	42	0	0	56	1.05
1409052--1409135	29	3.1	26	75	20	82	45	0	1	53	1.08
1409053--1409135	25	3.1	25	78	16	69	44	0	1	54	1.08

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18