genome.fa.s193.2.7.7.80.10.50.1000.16.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold193
Parameters: 2 7 7 80 10 50 1000
Length:  3104049

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  16  of  18  ( 2130 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2665585--2665663	36	2.2	32	83	16	95	49	0	0	50	1.00
2665972--2666009	12	3.0	13	84	7	60	60	0	0	39	0.97
2671473--2671545	31	2.4	29	76	17	76	49	1	2	46	1.24
2671554--2671629	20	3.7	19	79	11	80	47	0	1	51	1.09
2677783--2678530	252	3.0	251	93	2	1248	39	8	19	33	1.81
2680531--2680579	21	2.3	21	100	0	98	22	10	4	63	1.43
2686925--2686955	2	15.5	2	93	0	53	48	0	3	48	1.17
2687759--2687783	13	1.9	13	100	0	50	80	0	0	20	0.72
2688230--2688367	73	1.9	73	87	3	206	41	10	5	43	1.60
2688327--2688369	17	2.5	17	84	0	50	46	11	4	37	1.61
2689269--2689299	14	2.2	14	100	0	62	41	6	19	32	1.77
2689949--2689998	21	2.3	21	83	10	57	40	6	6	48	1.52
2690164--2690205	16	2.6	16	84	3	57	30	0	0	69	0.89
2690239--2690279	21	2.0	21	90	9	66	39	0	0	60	0.96
2698209--2698259	23	2.2	22	86	13	68	60	0	0	39	0.97
2699754--2699791	16	2.4	16	83	12	51	65	0	0	34	0.93
2703256--2703281	7	3.7	7	100	0	52	23	0	0	76	0.78
2704386--2704461	37	2.0	38	89	2	118	34	22	22	21	1.97
2707013--2707486	157	3.0	157	99	0	939	44	6	23	24	1.78
2708410--2708455	15	3.1	16	81	15	62	50	0	0	50	1.00
2710165--2710212	13	3.6	13	83	13	62	41	0	0	58	0.98
2710167--2710214	14	3.5	14	78	13	55	39	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2710553--2710655	52	2.0	51	81	9	120	36	0	3	58	1.23
2710626--2710672	22	2.1	22	84	7	60	34	2	2	61	1.20
2710951--2710996	17	2.8	16	81	12	58	78	0	19	2	0.86
2710959--2711015	23	2.5	23	83	8	80	77	0	19	3	0.92
2711657--2711701	13	3.4	13	85	11	56	55	0	2	42	1.12
2711656--2711703	14	3.5	14	82	2	62	56	0	2	41	1.11
2721473--2721509	4	8.8	4	96	3	56	21	0	0	78	0.75
2723683--2723745	2	31.5	2	90	0	99	47	0	0	52	1.00
2724126--2724164	21	2.0	21	85	10	55	51	2	2	43	1.29
2726905--2726955	23	2.2	23	100	0	102	25	15	7	50	1.71
2726995--2727048	18	2.9	19	77	5	65	55	0	0	44	0.99
2727061--2727102	21	2.0	21	81	9	50	35	2	2	59	1.23
2728041--2728094	16	3.4	17	75	10	60	50	9	9	31	1.66
2728043--2728105	32	2.0	32	84	6	83	47	11	7	33	1.68
2728127--2728156	15	1.9	16	93	6	53	53	0	0	46	1.00
2729914--2729955	2	21.5	2	85	4	59	47	0	2	50	1.14
2733498--2733523	13	2.0	13	100	0	52	30	15	15	38	1.88
2733478--2733541	32	2.0	33	87	3	94	28	14	17	40	1.88
2733562--2733634	20	3.6	20	81	9	76	30	16	15	38	1.89
2733582--2733637	20	2.8	20	89	5	78	30	16	14	39	1.88
2735586--2735628	20	2.1	20	82	4	50	11	30	41	16	1.83
2738151--2738181	15	2.1	15	93	0	53	12	22	16	48	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2742249--2742274	13	2.0	13	100	0	52	30	15	15	38	1.88
2742229--2742292	32	2.0	33	87	3	94	28	14	17	40	1.88
2742313--2742385	20	3.6	20	81	9	76	30	16	15	38	1.89
2742333--2742388	20	2.8	20	89	5	78	30	16	14	39	1.88
2746079--2746160	42	2.0	42	95	0	146	36	13	10	39	1.80
2746421--2746459	19	2.1	19	95	0	69	20	12	43	23	1.86
2747972--2748005	2	17.0	2	100	0	68	50	0	0	50	1.00
2748905--2748944	18	2.2	18	86	8	55	75	7	7	10	1.20
2749134--2749347	34	6.4	34	84	7	262	40	25	7	25	1.83
2749134--2749347	102	2.1	98	91	3	338	40	25	7	25	1.83
2753419--2753476	19	3.1	19	89	0	89	32	18	18	29	1.96
2753782--2753970	34	5.6	34	79	10	190	42	23	5	28	1.76
2753782--2753984	68	3.0	68	83	3	241	42	23	4	29	1.75
2753783--2753970	102	1.8	102	83	2	252	42	23	5	28	1.76
2754415--2754464	16	3.1	16	94	0	91	56	6	26	12	1.58
2754907--2754973	13	5.3	14	71	20	58	53	0	0	46	1.00
2754907--2754979	14	5.8	13	71	19	57	54	0	0	45	0.99
2754918--2754964	24	2.0	23	91	4	76	46	0	0	53	1.00
2760280--2760325	16	3.0	16	84	6	51	34	0	0	65	0.93
2760659--2760715	2	28.5	2	89	0	87	47	0	0	52	1.00
2761096--2761134	21	2.0	21	85	10	55	51	2	2	43	1.29
2766354--2766393	2	20.5	2	84	5	55	47	0	2	50	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2768122--2768197	37	2.0	38	92	2	127	31	23	23	21	1.98
2774405--2774440	14	2.6	14	91	8	56	58	0	0	41	0.98
2774788--2774831	2	22.0	2	100	0	88	50	0	0	50	1.00
2777938--2777978	11	3.7	12	84	12	52	34	0	2	63	1.08
2777989--2778030	17	2.5	17	88	0	66	54	4	0	40	1.21
2781358--2781392	14	2.5	14	95	0	61	45	0	5	48	1.26
2782953--2782988	14	2.5	15	91	8	58	38	0	0	61	0.96
2785367--2785404	2	19.0	2	94	0	67	47	0	0	52	1.00
2785805--2785933	70	1.9	69	82	9	165	43	7	5	43	1.56
2790666--2790714	17	2.7	20	87	12	70	28	0	0	71	0.86
2794293--2794329	16	2.2	17	90	4	58	37	0	8	54	1.30
2794390--2794438	24	2.0	25	84	11	66	53	0	0	46	1.00
2796866--2796921	30	1.9	30	82	7	71	46	14	1	37	1.55
2800442--2800479	18	2.1	19	85	5	51	21	5	5	68	1.29
2800481--2800519	18	2.2	18	90	0	60	25	0	2	71	0.98
2800790--2800824	2	17.5	2	100	0	70	48	0	0	51	1.00
2802594--2802627	16	2.1	16	88	0	50	38	2	0	58	1.13
2803059--2803105	22	2.1	23	88	4	69	48	0	0	51	1.00
2803059--2803115	22	2.6	22	83	5	62	52	0	0	47	1.00
2803450--2803513	16	4.0	16	79	6	67	40	4	1	53	1.31
2804013--2804060	4	12.2	4	78	12	55	2	27	0	70	0.98
2804803--2804843	14	3.0	13	86	10	55	51	4	4	39	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2805481--2805519	20	1.9	21	89	5	62	69	2	0	28	1.02
2805721--2805878	77	2.0	78	84	7	205	37	10	12	39	1.78
2806120--2806149	11	2.8	11	95	5	53	6	6	0	86	0.70
2810244--2810278	16	2.1	17	89	5	54	57	5	0	37	1.23
2811875--2811922	19	2.5	19	83	10	53	45	0	0	54	0.99
2811894--2811931	19	2.0	20	84	5	51	50	2	0	47	1.15
2814303--2814334	16	2.0	16	100	0	64	50	25	12	12	1.75
2819406--2819470	24	2.7	23	76	23	64	24	0	10	64	1.25
2819414--2819474	13	5.0	12	72	9	52	26	0	11	62	1.29
2822094--2822149	19	2.8	19	81	8	67	71	0	0	28	0.86
2822091--2822153	30	2.1	30	91	5	101	73	0	0	26	0.84
2822109--2822262	9	16.8	9	69	22	74	61	3	0	34	1.17
2822199--2822264	28	2.3	27	82	14	80	62	1	0	36	1.05
2822109--2822169	29	2.2	28	75	18	56	65	3	0	31	1.09
2822125--2822274	46	3.4	44	70	17	114	58	4	1	36	1.25
2823495--2823519	11	2.3	11	100	0	50	40	0	0	60	0.97
2824101--2824169	28	2.4	28	79	13	79	30	7	5	56	1.50
2824290--2824316	2	13.5	2	100	0	54	51	0	0	48	1.00
2825845--2825884	20	2.0	21	90	5	64	45	7	0	47	1.31
2826043--2826097	3	18.3	3	96	0	101	65	1	0	32	1.03
2829011--2829056	2	23.0	2	100	0	92	50	0	0	50	1.00
2831239--2832910	334	5.0	334	96	0	3058	27	20	13	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2835086--2835153	22	3.1	21	79	10	75	73	8	10	7	1.25
2839982--2840110	52	2.5	52	94	0	231	31	17	16	35	1.92
2842558--2842662	34	3.2	34	67	22	105	43	13	5	37	1.68
2842567--2842670	31	3.3	31	68	21	97	47	12	4	35	1.63
2842534--2842685	65	2.3	65	98	1	295	45	10	3	40	1.57
2842664--2842690	2	13.5	2	100	0	54	51	0	0	48	1.00
2842664--2842704	10	4.0	11	87	9	52	48	0	2	48	1.14
2842741--2842772	16	2.1	15	94	5	55	50	6	0	43	1.27
2844201--2844238	3	12.7	3	100	0	76	65	0	0	34	0.93
2848391--2848453	25	2.6	24	75	22	69	20	11	0	68	1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18