genome.fa.s211.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold211
Parameters: 2 7 7 80 10 50 1000
Length:  2157208

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   

This is table  1  of  15  ( 1763 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1585--1635	12	4.2	12	78	9	59	33	0	0	66	0.92
2011--2039	2	15.0	2	92	7	51	51	0	0	48	1.00
2901--2970	19	3.3	21	76	13	63	50	0	1	48	1.09
2923--2985	31	2.0	31	84	9	83	57	0	0	42	0.99
3802--3879	24	3.2	24	75	12	79	57	0	0	42	0.98
4081--4170	32	2.7	33	86	6	128	52	0	0	47	1.00
4082--4159	16	4.8	16	70	20	54	50	0	0	50	1.00
4943--4988	22	2.1	22	84	8	58	39	0	2	58	1.10
6224--6299	20	3.9	20	75	11	59	61	2	1	34	1.18
6322--6347	6	4.3	6	100	0	52	65	0	0	34	0.93
6257--6336	33	2.4	32	78	17	92	62	2	0	35	1.09
6347--6406	15	3.9	15	85	8	77	0	16	0	83	0.65
6347--6405	11	5.5	10	84	13	73	0	16	0	83	0.66
6347--6405	22	2.7	22	87	10	86	0	16	0	83	0.66
6636--6689	16	3.2	16	80	14	56	27	1	1	68	1.10
6636--6691	29	1.9	29	85	7	78	26	1	1	69	1.08
7127--7237	15	6.8	16	72	17	68	61	0	0	38	0.96
7117--7244	25	5.0	25	72	19	86	61	0	0	38	0.96
7148--7248	32	3.3	32	69	22	83	60	0	0	39	0.97
7129--7240	57	1.9	59	82	10	142	60	0	0	39	0.97
7128--7243	16	7.1	16	70	20	71	61	0	0	38	0.96
7123--7251	41	3.1	41	70	21	108	60	0	0	39	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7693--7747	8	7.1	8	72	15	53	40	0	0	60	0.97
7693--7747	23	2.4	23	76	11	67	40	0	0	60	0.97
7735--7805	31	2.2	31	79	16	74	40	2	0	56	1.14
7766--7829	26	2.6	24	80	9	58	37	3	0	59	1.13
10241--10331	37	2.5	37	80	8	98	37	8	15	38	1.78
11686--11715	14	2.1	14	93	0	51	33	10	0	56	1.32
13229--13273	23	2.0	23	87	8	67	48	2	0	48	1.13
13781--13827	16	2.9	16	83	3	58	61	2	0	36	1.08
14301--14373	29	2.6	28	87	8	96	36	0	1	61	1.05
14301--14374	28	2.7	26	78	12	76	37	0	1	60	1.05
14324--14385	29	2.1	29	84	0	79	40	0	1	58	1.08
15253--15292	16	2.4	17	79	8	55	32	5	10	52	1.56
18327--18412	39	2.3	37	81	4	100	53	0	2	44	1.13
18369--18416	18	2.6	20	81	15	59	52	0	2	45	1.12
18482--18514	16	2.1	16	94	0	57	51	6	0	42	1.26
24891--24932	15	2.9	14	82	6	57	57	2	0	40	1.12
26375--26417	22	2.0	22	85	0	59	46	4	2	46	1.36
27950--27998	22	2.2	22	78	7	55	59	0	0	40	0.98
29386--29417	2	16.0	2	100	0	64	50	0	0	50	1.00
29481--29525	21	2.1	22	83	4	56	28	2	6	62	1.33
29580--29628	18	2.6	19	83	9	64	30	0	0	69	0.89
33547--33576	3	10.0	3	100	0	60	66	0	33	0	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33725--33790	22	3.0	21	76	23	66	51	1	0	46	1.10
33732--33827	44	2.2	45	83	9	126	54	0	0	45	0.99
33964--33995	16	1.9	17	93	6	57	59	0	0	40	0.97
34450--34512	13	4.5	13	73	21	56	63	0	0	36	0.95
34453--34492	17	2.3	18	86	4	55	70	0	0	30	0.88
34467--34504	12	3.2	12	88	7	51	71	0	0	28	0.87
34458--34507	18	2.8	18	84	6	57	66	0	0	34	0.92
34553--34608	25	2.2	25	77	0	58	51	1	1	44	1.22
34594--34655	25	2.7	23	80	9	65	58	0	0	41	0.98
35033--35075	22	2.0	22	86	9	61	46	0	0	53	1.00
38354--38389	17	2.2	16	90	9	56	50	0	0	50	1.00
39369--39395	13	2.1	13	100	0	54	55	0	0	44	0.99
39619--39682	27	2.3	28	84	7	78	45	0	0	54	0.99
39691--39728	15	2.6	15	84	15	53	31	0	0	68	0.90
40818--40886	26	2.6	27	83	4	95	53	2	1	42	1.24
40870--40918	19	2.7	19	84	6	57	38	0	0	61	0.96
42033--42068	17	2.1	17	90	10	56	44	2	0	52	1.15
42025--42083	27	2.4	24	81	13	68	45	1	0	52	1.10
42101--42129	14	2.0	15	93	6	51	27	0	3	68	1.05
42172--42216	20	2.2	21	84	11	58	62	0	2	35	1.08
42682--42726	20	2.2	20	88	0	63	66	0	0	33	0.92
42685--42742	16	3.7	15	84	9	71	68	1	0	29	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44988--45030	22	2.0	22	86	9	61	41	0	0	58	0.98
45196--45234	3	13.0	3	88	0	60	66	5	0	28	1.12
45595--45625	2	16.0	2	93	6	55	48	0	0	51	1.00
47678--47716	14	2.7	14	81	18	53	53	0	0	46	1.00
47640--47761	39	3.1	38	74	16	106	45	0	0	53	1.06
48241--48270	3	10.0	3	100	0	60	66	0	0	33	0.92
49898--49942	19	2.4	19	88	3	65	46	0	0	53	1.00
50283--50330	2	24.0	2	100	0	96	50	0	50	0	1.00
50793--50871	35	2.2	36	80	6	90	48	0	2	49	1.14
51224--51261	15	2.7	14	84	11	51	68	2	0	28	1.03
56453--56504	15	3.5	15	81	0	68	42	0	40	17	1.49
63306--63342	18	2.1	18	89	0	56	2	27	5	64	1.28
63784--63832	25	2.0	23	88	7	71	32	4	0	63	1.13
63948--63998	24	2.1	25	85	3	68	27	7	3	60	1.42
63961--64056	50	2.0	48	81	8	113	25	7	3	64	1.34
64208--64334	45	2.8	44	85	8	184	58	0	7	33	1.33
64208--64335	46	2.8	44	85	9	186	58	0	7	32	1.32
64983--65035	21	2.5	21	81	6	63	35	20	3	39	1.71
70010--70067	21	2.8	21	81	5	64	34	24	3	37	1.72
72735--72790	28	2.0	28	100	0	112	46	14	14	25	1.82
74452--74510	17	3.3	18	76	19	61	57	0	0	42	0.98
76768--76831	32	2.0	33	90	3	103	46	1	0	51	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76781--76833	16	3.3	16	71	10	54	49	1	0	49	1.12
76743--76847	32	3.5	30	74	16	94	44	1	0	53	1.11
78632--79444	186	4.3	187	83	2	873	36	8	12	42	1.73
85274--85354	21	3.9	21	72	19	71	35	0	0	64	0.94
85295--85388	29	3.2	30	84	13	117	38	0	0	61	0.96
86410--86456	22	2.1	22	88	0	67	51	0	6	42	1.27
86432--86505	31	2.4	31	78	14	82	50	1	4	44	1.29
86812--86848	2	18.5	2	100	0	74	48	0	0	51	1.00
88652--88798	75	2.0	75	84	0	195	34	19	15	30	1.93
89072--89237	76	2.2	76	81	2	199	43	6	12	37	1.67
89917--89950	2	17.0	2	93	0	59	47	2	0	50	1.16
90945--90978	13	2.6	13	85	0	50	44	0	0	55	0.99
90916--90980	28	2.3	29	84	10	82	44	0	0	55	0.99
91438--91505	35	1.9	35	85	5	93	63	0	0	36	0.95
91444--91519	21	3.6	21	71	7	57	63	0	1	35	1.03
91803--91835	12	3.0	11	87	12	50	45	0	0	54	0.99
91780--91831	19	2.9	17	78	13	59	44	0	1	53	1.11
91776--91835	22	2.9	21	82	14	79	43	0	1	55	1.10
92445--92492	20	2.3	21	79	13	55	62	0	0	37	0.95
100793--100822	3	9.7	3	92	7	51	63	3	0	33	1.11
102498--102531	13	2.6	13	85	0	50	73	0	0	26	0.83
102497--102544	24	2.0	24	88	8	71	68	0	0	31	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102625--102666	16	2.6	16	81	7	50	38	0	0	61	0.96
103862--103927	17	3.8	18	73	13	57	45	0	0	54	0.99
104933--104981	20	2.5	20	82	0	62	53	0	0	46	1.00
105301--105427	65	2.0	64	83	7	159	50	4	5	39	1.47
106455--106501	16	3.1	15	82	11	51	55	0	2	42	1.12
107023--107076	20	2.6	22	77	19	62	59	1	0	38	1.08
107466--107518	26	2.0	26	85	7	72	37	0	0	62	0.96
109997--110083	17	4.8	18	72	17	65	59	0	2	37	1.10
117004--117058	22	2.5	21	80	8	65	61	0	0	38	0.96
117071--117130	22	2.7	23	87	5	88	50	8	1	40	1.43

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15