genome.fa.s211.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold211
Parameters: 2 7 7 80 10 50 1000
Length:  2157208

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   

This is table  14  of  15  ( 1763 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1938782--1938844	12	5.0	12	84	7	81	47	1	0	50	1.10
1938827--1938868	21	2.0	21	86	9	59	69	0	0	30	0.89
1939248--1939293	23	2.0	24	83	12	60	45	0	2	52	1.13
1939859--1939896	2	19.0	2	100	0	76	50	0	0	50	1.00
1941775--1941817	3	14.3	3	90	9	70	67	0	0	32	0.91
1946165--1946217	25	2.2	22	84	15	70	49	5	0	45	1.26
1946576--1946649	26	3.0	26	74	16	77	44	1	2	51	1.24
1949420--1949468	15	3.3	15	77	8	55	57	22	4	16	1.56
1949476--1949521	16	2.9	16	81	12	60	50	30	10	8	1.68
1949708--1949749	22	1.9	22	90	0	66	47	9	9	33	1.68
1952509--1952548	2	20.5	2	94	5	73	50	0	0	50	1.00
1952750--1952784	4	8.8	4	100	0	70	74	0	0	25	0.82
1953086--1953126	20	2.0	20	100	0	82	31	9	14	43	1.78
1955442--1955477	15	2.3	16	90	4	56	27	11	13	47	1.77
1955983--1956049	33	2.0	33	88	0	98	34	11	13	40	1.81
1956003--1956027	13	1.9	13	100	0	50	36	16	16	32	1.90
1956092--1956116	13	1.9	13	100	0	50	32	16	16	36	1.90
1956125--1956245	52	2.3	52	97	0	224	34	18	18	28	1.94
1959323--1959445	37	3.5	36	78	13	121	23	14	24	37	1.92
1959366--1959424	31	1.9	31	92	0	100	18	20	23	37	1.94
1960626--1960681	16	3.5	16	71	9	51	46	25	14	14	1.82
1961545--1961574	2	15.0	2	100	0	60	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1964424--1964689	80	3.4	80	75	7	211	28	25	10	34	1.90
1972549--1972603	24	2.2	24	79	17	60	45	0	1	52	1.11
1977702--1977786	28	2.9	29	74	16	93	49	0	0	50	1.00
1977705--1977780	20	4.1	20	71	23	60	51	0	0	48	1.00
1977708--1977789	33	2.5	33	82	9	103	48	0	0	51	1.00
1977705--1977768	17	3.6	18	73	16	62	51	0	0	48	1.00
1978616--1978719	2	51.5	2	73	5	75	51	3	42	1	1.31
1988504--1988579	20	3.8	20	79	6	91	42	14	10	32	1.80
1990613--1990650	19	2.0	19	100	0	76	15	10	15	57	1.64
1993732--1993772	13	3.2	13	89	6	57	85	0	12	2	0.70
1993732--1993772	12	3.5	12	84	12	50	85	0	12	2	0.70
1994652--1994903	58	4.4	56	78	7	211	26	9	18	45	1.80
1994809--1994902	30	3.2	30	66	22	72	25	6	19	48	1.72
1994745--1994924	58	3.1	58	82	1	209	26	7	17	47	1.75
1994652--1994954	116	2.6	116	77	6	258	27	9	16	46	1.78
1997427--1997451	11	2.3	11	100	0	50	60	32	0	8	1.26
2002396--2002433	17	2.4	17	91	8	62	47	5	5	42	1.48
2002426--2002462	19	1.9	19	89	10	58	37	0	0	62	0.96
2005415--2005464	15	3.2	15	82	5	55	60	0	0	40	0.97
2007310--2007348	2	19.5	2	94	0	69	51	2	0	46	1.14
2012012--2012057	12	4.1	12	75	13	53	58	0	0	41	0.98
2011996--2012060	23	3.0	22	80	14	73	58	0	1	40	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2012011--2012086	30	2.6	29	78	14	84	56	0	0	43	0.99
2012033--2012090	17	3.1	18	80	14	55	51	0	0	48	1.00
2012044--2012117	18	4.1	17	74	19	53	55	1	0	43	1.08
2016543--2016579	5	7.8	5	88	11	60	43	0	0	56	0.99
2016546--2016579	9	3.7	9	96	4	59	41	0	0	58	0.98
2016714--2016769	14	4.1	14	73	15	55	55	3	1	39	1.28
2016699--2016739	20	2.0	20	90	0	64	58	2	2	36	1.24
2016692--2016772	25	3.5	24	78	13	89	55	2	1	40	1.21
2016868--2016900	17	2.0	17	88	5	50	45	0	0	54	0.99
2016968--2017102	68	2.0	68	83	2	173	47	12	8	31	1.71
2017086--2017138	23	2.3	23	100	0	106	47	7	13	32	1.70
2017145--2017177	16	2.1	16	100	0	66	36	0	6	57	1.23
2017240--2017286	23	2.0	24	83	4	60	68	2	0	29	1.02
2017473--2017514	19	2.2	19	87	8	59	45	4	0	50	1.23
2018229--2018257	12	2.3	13	94	5	51	27	0	3	68	1.05
2018514--2018545	11	2.8	12	90	9	50	31	0	0	68	0.90
2019635--2019680	18	2.5	19	85	3	67	63	0	0	36	0.95
2019641--2019701	26	2.2	28	82	8	72	63	0	0	36	0.94
2020768--2020846	38	2.1	38	90	0	122	60	3	8	26	1.43
2021122--2021148	13	2.1	13	100	0	54	25	0	22	51	1.48
2021921--2021963	11	3.8	11	85	11	52	30	0	0	69	0.88
2021927--2021964	12	3.2	12	89	10	53	26	0	0	73	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2022333--2022388	29	1.9	29	92	0	94	41	3	0	55	1.17
2022328--2022390	29	2.3	26	75	17	63	39	3	0	57	1.15
2022868--2022947	32	2.4	32	79	10	81	48	1	1	48	1.17
2022943--2023008	23	3.0	21	82	10	69	71	1	3	24	1.09
2024347--2024393	22	2.1	22	88	7	69	59	2	0	38	1.09
2024349--2024407	24	2.5	23	75	21	59	61	1	0	37	1.07
2024347--2024406	25	2.5	25	84	12	74	61	1	0	36	1.06
2024589--2024673	24	3.3	24	74	17	73	45	0	3	50	1.18
2025294--2025346	24	2.2	25	77	12	58	41	0	1	56	1.10
2025657--2025711	21	2.7	20	77	5	56	54	3	1	40	1.28
2033645--2033702	19	3.1	19	81	13	68	58	3	0	37	1.15
2033960--2033997	2	19.0	2	100	0	76	50	0	0	50	1.00
2041057--2041362	28	10.9	28	80	6	296	30	28	17	24	1.97
2041089--2041329	86	2.8	86	83	6	298	30	29	17	22	1.97
2041110--2041326	114	1.9	114	83	3	285	29	30	17	22	1.96
2041370--2041559	28	6.8	28	78	7	163	31	28	16	23	1.96
2041272--2041458	98	1.9	98	84	2	250	27	27	18	25	1.98
2041257--2041486	126	1.8	126	81	1	291	29	27	17	24	1.98
2041215--2041521	154	2.0	154	82	3	368	29	28	16	25	1.97
2041406--2041559	84	1.8	84	80	2	184	32	27	15	24	1.95
2041378--2041577	56	3.5	56	78	5	188	31	28	16	23	1.96
2042171--2042591	165	2.5	167	88	2	600	30	10	7	51	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2042703--2042741	19	2.0	20	85	5	53	35	0	2	61	1.10
2046336--2046815	52	9.2	52	78	5	412	38	14	20	26	1.91
2046336--2046815	105	4.6	104	79	6	463	38	14	20	26	1.91
2046336--2046815	209	2.3	209	78	4	493	38	14	20	26	1.91
2046330--2046815	157	3.1	156	78	5	487	38	14	20	26	1.91
2046876--2046956	33	2.5	33	85	0	99	28	17	22	32	1.96
2046904--2046967	33	1.9	33	87	0	92	28	17	25	29	1.97
2047011--2047493	29	16.8	28	74	10	296	30	12	29	27	1.93
2046958--2047574	116	5.3	114	77	9	407	30	12	29	27	1.93
2046958--2047544	58	10.2	58	74	8	369	30	12	29	27	1.93
2047010--2047574	87	6.5	85	73	8	331	30	12	29	27	1.93
2047517--2047579	30	2.1	31	87	3	92	30	14	25	30	1.95
2052608--2052901	149	2.0	151	79	2	324	41	19	15	23	1.89
2053644--2053711	34	2.0	34	97	0	127	32	19	5	42	1.75
2054811--2055278	163	2.9	161	81	7	473	47	10	10	30	1.72
2058406--2058660	97	2.6	97	86	4	320	42	10	18	29	1.83
2058516--2058702	97	1.9	97	86	6	263	39	10	19	29	1.86
2060873--2060907	16	2.2	16	100	0	70	42	17	11	28	1.83
2064454--2064495	21	2.0	22	85	4	59	40	21	0	38	1.53
2067731--2067778	24	2.0	24	100	0	96	41	16	16	25	1.89
2068823--2068866	5	9.4	5	92	5	58	40	0	0	59	0.98
2069265--2069328	24	2.6	24	70	9	58	42	3	0	54	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2069277--2069325	22	2.1	23	85	7	64	42	4	0	53	1.20
2069749--2069787	19	2.0	20	90	9	64	23	0	0	76	0.78
2071217--2071254	19	2.0	20	84	5	51	57	5	0	36	1.21
2071375--2071423	21	2.3	22	75	10	57	46	4	0	48	1.20
2072083--2072147	27	2.3	28	79	12	71	61	0	1	36	1.05
2072357--2072391	12	2.8	12	86	4	52	34	14	0	51	1.42
2072357--2072389	13	2.6	13	90	4	50	36	15	0	48	1.45
2072707--2072784	29	2.7	29	78	5	79	56	6	0	37	1.25
2073764--2073798	15	2.5	14	86	13	54	51	0	0	48	1.00
2073912--2074009	8	12.1	8	70	23	64	39	2	2	56	1.23

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15