genome.fa.s211.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold211
Parameters: 2 7 7 80 10 50 1000
Length:  2157208

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   

This is table  11  of  15  ( 1763 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1542772--1542805	2	17.0	2	100	0	68	50	0	0	50	1.00
1544257--1544295	18	2.2	18	85	0	51	20	0	61	17	1.34
1544360--1544401	18	2.3	18	92	8	68	16	0	69	14	1.20
1544477--1544528	21	2.5	21	84	6	61	9	1	67	21	1.29
1546789--1546868	18	4.4	18	68	23	60	63	0	0	36	0.94
1546772--1546831	18	3.6	16	77	20	61	70	0	0	30	0.88
1546748--1546848	37	2.8	36	82	13	109	64	0	1	33	1.05
1546772--1546825	11	4.7	12	82	17	62	68	0	0	31	0.90
1546775--1546848	25	2.9	25	72	20	73	67	0	0	32	0.91
1546789--1546840	15	3.7	15	80	16	58	69	0	0	30	0.89
1546907--1546950	19	2.3	19	84	0	52	72	2	0	25	0.96
1547815--1547862	19	2.6	19	78	15	55	50	0	2	47	1.12
1548142--1548185	16	2.8	16	96	0	79	54	15	4	25	1.60
1548141--1548195	16	3.4	16	87	5	67	58	12	3	25	1.51
1548284--1548330	16	2.9	16	80	0	58	59	10	4	25	1.49
1548316--1548356	10	4.5	10	77	22	54	60	0	0	39	0.96
1548322--1548355	16	2.1	16	100	0	68	58	0	0	41	0.98
1548301--1548356	26	2.2	26	90	0	85	60	5	0	33	1.19
1550426--1550454	15	1.9	15	100	0	58	41	6	6	44	1.58
1551252--1551294	10	4.0	10	82	14	50	69	2	0	27	1.00
1551967--1552003	20	2.0	19	85	15	51	45	5	0	48	1.25
1555658--1555716	28	2.2	25	79	8	64	52	1	3	42	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1557133--1557157	2	12.5	2	100	0	50	52	0	0	48	1.00
1557470--1557497	14	2.0	14	100	0	56	57	0	14	28	1.38
1558971--1559018	14	3.1	16	77	17	57	45	0	0	54	0.99
1558977--1559038	11	5.2	12	75	11	56	51	0	0	48	1.00
1559089--1559175	25	3.3	25	78	10	77	44	2	3	49	1.31
1558971--1559134	18	9.8	18	69	22	67	47	1	1	50	1.16
1559060--1559181	44	2.8	42	79	16	108	46	2	2	48	1.28
1559099--1559181	13	6.2	13	75	17	62	45	2	3	48	1.33
1561575--1561603	2	14.5	2	100	0	58	51	0	0	48	1.00
1561781--1561854	2	37.0	2	100	0	148	50	0	0	50	1.00
1566167--1566218	21	2.5	21	100	0	104	36	21	3	38	1.72
1567295--1567333	13	3.0	13	96	0	69	43	17	7	30	1.77
1569578--1569635	21	2.8	21	83	0	71	34	27	3	34	1.74
1577173--1577248	39	1.9	39	82	10	93	57	7	7	26	1.54
1580386--1580432	21	2.2	21	85	7	60	46	23	23	6	1.75
1585592--1585644	8	7.0	8	79	16	60	84	1	0	13	0.69
1585594--1585651	7	8.6	7	81	11	59	86	1	1	10	0.73
1585592--1585644	14	3.6	14	83	14	70	84	1	0	13	0.69
1585592--1585651	15	4.0	14	83	14	75	85	1	1	11	0.76
1589135--1589173	20	2.0	20	84	0	51	35	10	2	51	1.50
1589263--1589306	23	1.9	23	85	0	61	52	0	0	47	1.00
1589316--1589357	15	2.8	16	85	10	61	33	0	2	64	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1591358--1591508	71	2.1	71	95	1	268	35	17	16	29	1.92
1591351--1591508	70	2.2	70	93	1	271	34	17	17	31	1.92
1591542--1591579	20	1.9	20	100	0	76	44	13	10	31	1.77
1591606--1591658	19	2.7	20	85	11	74	35	13	13	37	1.83
1600288--1600352	33	2.0	33	88	8	98	33	15	12	38	1.85
1605503--1605552	19	2.6	19	96	0	91	36	18	12	34	1.87
1614806--1614938	35	3.6	36	71	19	87	48	0	2	48	1.19
1614914--1614966	19	2.8	18	85	5	61	45	0	3	50	1.19
1614913--1614971	25	2.4	24	78	13	66	45	0	3	50	1.18
1614885--1615006	44	2.8	42	77	16	108	47	1	2	48	1.25
1614924--1615012	13	6.6	13	71	20	58	46	2	3	48	1.31
1615008--1615053	24	1.9	24	86	0	65	41	2	0	56	1.11
1615422--1615453	2	16.5	2	93	6	57	50	0	0	50	1.00
1615478--1615519	13	2.9	14	86	13	59	57	0	0	42	0.99
1618610--1618668	30	2.0	30	83	3	75	40	6	3	49	1.46
1619149--1619206	19	3.1	18	78	7	62	37	1	5	55	1.33
1619178--1619216	17	2.2	18	86	4	53	46	0	5	48	1.24
1620228--1620374	76	1.9	76	82	5	181	34	12	7	46	1.69
1623454--1623492	14	2.8	14	96	0	69	30	0	2	66	1.05
1623453--1623495	6	6.1	7	80	20	54	30	0	2	67	1.03
1625878--1625915	16	2.3	17	86	4	51	52	13	7	26	1.67
1626877--1626953	37	2.0	38	82	5	93	32	0	28	38	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1627495--1627534	15	2.6	16	84	11	57	37	0	2	60	1.11
1627544--1627592	14	3.2	17	72	21	54	44	0	0	55	0.99
1627511--1627592	29	2.8	29	85	9	103	43	2	1	52	1.22
1627556--1627644	39	2.4	37	80	15	105	49	0	1	49	1.08
1630349--1630433	19	4.3	20	74	5	66	48	24	0	27	1.52
1630787--1630824	19	2.0	19	90	10	60	34	0	0	65	0.93
1631223--1631270	20	2.4	20	79	6	53	64	0	0	35	0.94
1635350--1635392	15	2.9	14	77	12	50	41	0	2	55	1.12
1635536--1635587	24	2.0	28	85	14	76	48	0	0	51	1.00
1635609--1635666	18	3.0	18	83	14	71	46	0	3	50	1.18
1635639--1635685	15	3.2	15	76	14	53	46	2	0	51	1.13
1635533--1635691	47	3.5	44	77	9	135	47	1	1	49	1.20
1636121--1636157	2	18.5	2	100	0	74	48	0	0	51	1.00
1639194--1639292	2	49.5	2	87	0	117	42	1	8	48	1.39
1639811--1639868	30	1.9	30	92	0	98	12	20	13	53	1.72
1640515--1640559	21	2.1	21	91	0	72	33	15	15	35	1.89
1640739--1640767	7	4.1	7	100	0	58	44	13	13	27	1.82
1645777--1645843	33	2.0	34	88	2	100	38	19	14	26	1.91
1648000--1648071	20	3.5	20	88	1	99	37	12	18	31	1.88
1648132--1648211	32	2.5	32	97	0	151	31	18	11	38	1.86
1650598--1651062	79	5.9	79	73	11	319	28	23	10	36	1.89
1650582--1651039	158	2.9	159	81	4	507	27	24	11	37	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1652658--1652704	21	2.2	22	85	11	62	40	8	6	44	1.60
1655451--1655530	30	2.6	30	92	2	124	62	15	1	21	1.39
1655486--1655541	24	2.4	23	77	11	60	64	12	0	23	1.27
1656734--1656769	12	3.1	12	96	4	65	0	13	0	86	0.58
1658853--1658910	21	2.8	21	84	2	82	44	13	5	36	1.66
1659610--1659634	13	1.9	13	100	0	50	48	8	8	36	1.62
1659623--1659657	16	2.1	17	89	5	54	54	20	5	20	1.64
1661248--1661610	157	2.3	158	79	7	414	33	12	24	29	1.92
1661248--1661641	79	5.0	79	79	6	379	35	12	23	28	1.91
1662763--1662839	20	3.8	20	77	3	73	40	12	12	33	1.82
1663562--1664128	61	9.4	60	79	6	537	29	18	24	27	1.98
1663458--1664125	120	5.7	119	82	6	643	29	18	24	27	1.98
1663626--1664128	181	2.8	178	79	4	504	30	18	24	27	1.98
1665182--1665256	29	2.5	29	83	12	82	4	8	5	82	0.93
1665182--1665263	30	2.8	29	84	14	91	4	7	4	82	0.93
1668490--1668550	19	3.6	18	75	25	69	34	13	16	36	1.87
1668507--1668564	13	4.0	13	74	23	53	34	15	15	34	1.89
1668490--1668563	32	2.3	32	95	0	130	33	14	16	35	1.89
1668575--1668616	21	2.0	21	100	0	84	42	9	19	28	1.82
1668659--1668701	20	2.1	21	95	4	79	34	23	9	32	1.87
1670386--1670414	15	1.9	15	100	0	58	34	3	20	41	1.69
1670809--1670976	51	3.3	51	69	6	142	27	24	13	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1670810--1670995	102	1.8	102	91	0	309	27	23	12	35	1.92
1677694--1677719	13	2.0	13	100	0	52	30	15	15	38	1.88
1677674--1677737	32	2.0	33	87	3	94	28	14	17	40	1.88
1678426--1678469	21	2.1	22	87	8	65	25	29	4	40	1.75
1680270--1680295	13	2.0	13	100	0	52	38	15	15	30	1.88
1682374--1682404	15	2.1	15	93	0	53	12	22	16	48	1.80
1684189--1684233	21	2.1	21	84	8	56	22	20	4	53	1.63
1686453--1686478	13	2.0	13	100	0	52	30	15	15	38	1.88
1686433--1686496	32	2.0	33	87	3	94	28	14	17	40	1.88
1692901--1692960	27	2.3	27	91	2	95	86	8	1	3	0.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15